Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239743908
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743908 PREDICTED: hypothetical protein XP_002342989 [Homo
sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755140 PREDICTED: hypothetical protein [Homo sapiens] 229 5e-61
gi|239749633 PREDICTED: hypothetical protein [Homo sapiens] 229 5e-61
gi|239743908 PREDICTED: hypothetical protein XP_002342989 [Homo ... 229 5e-61
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 28 1.2
gi|14210524 BCL2-related ovarian killer [Homo sapiens] 28 1.6
gi|7662072 zinc finger and BTB domain containing 39 [Homo sapiens] 27 2.7
gi|46410929 solute carrier family 43, member 3 [Homo sapiens] 27 3.5
gi|41056259 solute carrier family 43, member 3 [Homo sapiens] 27 3.5
gi|18252047 solute carrier family 43, member 3 [Homo sapiens] 27 3.5
gi|4503835 frizzled 9 [Homo sapiens] 27 4.6
gi|59806357 submaxillary gland androgen regulated protein 3 homo... 27 4.6
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 27 4.6
gi|10334859 creatine kinase, mitochondrial 1B precursor [Homo sa... 27 4.6
gi|66346730 creatine kinase, mitochondrial 1A precursor [Homo sa... 27 4.6
gi|14165278 hypothetical protein LOC84418 [Homo sapiens] 27 4.6
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 26 6.0
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 26 6.0
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 26 6.0
gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 26 6.0
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 26 6.0
gi|112382285 exostoses-like 1 [Homo sapiens] 26 6.0
gi|157909822 pragmin [Homo sapiens] 26 6.0
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens] 26 6.0
gi|110578660 transmembrane protein 91 isoform b [Homo sapiens] 26 6.0
gi|149588874 transmembrane protein 91 isoform d [Homo sapiens] 26 6.0
gi|149588708 transmembrane protein 91 isoform c [Homo sapiens] 26 6.0
gi|149588687 transmembrane protein 91 isoform c [Homo sapiens] 26 6.0
gi|149588540 transmembrane protein 91 isoform e [Homo sapiens] 26 6.0
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 26 7.8
gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo ... 26 7.8
>gi|239755140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 229 bits (583), Expect = 5e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH 60
MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH
Sbjct: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH 60
Query: 61 SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE 111
SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE
Sbjct: 61 SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE 111
>gi|239749633 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 229 bits (583), Expect = 5e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH 60
MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH
Sbjct: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH 60
Query: 61 SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE 111
SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE
Sbjct: 61 SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE 111
>gi|239743908 PREDICTED: hypothetical protein XP_002342989 [Homo
sapiens]
Length = 111
Score = 229 bits (583), Expect = 5e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH 60
MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH
Sbjct: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGH 60
Query: 61 SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE 111
SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE
Sbjct: 61 SSLLWAPMPAEPPERLLPLAGGSFFWPHPPNHGYGLLPGALVLLALLSKEE 111
>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
Length = 255
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
F PL LL+L Q S ++ D+ + + L+ + GHS + P
Sbjct: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPK 114
Query: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
MP E P+ L P+ FW H P+
Sbjct: 115 LELMPLETPQALPPMLVHGTFWKHWPS 141
>gi|14210524 BCL2-related ovarian killer [Homo sapiens]
Length = 212
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 40 RKSSDSKTQSQAHLEGRSIGHSSLLWAPMPAEPPERLLPLAG 81
R +D + +QA GR H+ LL A + PER P+ G
Sbjct: 20 RSPTDKELVAQAKALGREYVHARLLRAGLSWSAPERAAPVPG 61
>gi|7662072 zinc finger and BTB domain containing 39 [Homo sapiens]
Length = 712
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 27 RLGQTIFLSVCHARKSSDSKTQSQAHLEGRSIGHSSLLWAPMPAEPPERLLPLAGG 82
RLG L CH+ T L S HS L P AEP L L GG
Sbjct: 108 RLGMEDLLQACHSTFPDLESTARAKPLTSTSESHSGTLSCP-SAEPAHPLGELRGG 162
>gi|46410929 solute carrier family 43, member 3 [Homo sapiens]
Length = 491
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 82 GSFFWPHPPNHGYGLLPG 99
G +P PPN+ YGL PG
Sbjct: 211 GHIPYPLPPNYSYGLCPG 228
>gi|41056259 solute carrier family 43, member 3 [Homo sapiens]
Length = 491
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 82 GSFFWPHPPNHGYGLLPG 99
G +P PPN+ YGL PG
Sbjct: 211 GHIPYPLPPNYSYGLCPG 228
>gi|18252047 solute carrier family 43, member 3 [Homo sapiens]
Length = 491
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 82 GSFFWPHPPNHGYGLLPG 99
G +P PPN+ YGL PG
Sbjct: 211 GHIPYPLPPNYSYGLCPG 228
>gi|4503835 frizzled 9 [Homo sapiens]
Length = 591
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 66 APMPAEPPERLLPLAGGSFFWPHPPNHGY 94
AP PA PP L P AGGS +P Y
Sbjct: 176 APRPARPPGDLGPGAGGSGTCENPEKFQY 204
>gi|59806357 submaxillary gland androgen regulated protein 3 homolog
A precursor [Homo sapiens]
Length = 134
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 70 AEPPERLLPLAGGSFFWPHPPNHGYGLLPGAL 101
A PP P G PHPP +G G P L
Sbjct: 36 APPPPPCFPFGTGFVPPPHPPPYGPGRFPPPL 67
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 64 LWAPMPAEPPERLLPLAGGSFFWPHPPNH 92
L + P PP P G F WP PP H
Sbjct: 440 LLSERPPRPPPPPPPPRDGPFPWPWPPAH 468
>gi|10334859 creatine kinase, mitochondrial 1B precursor [Homo
sapiens]
Length = 417
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 74 ERLLPLAGGSFFWPH--------PPNHGYGLLPGALVLLALLSKE 110
ERL+ G F W P N G GL G + L LLSK+
Sbjct: 294 ERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPLLSKD 338
>gi|66346730 creatine kinase, mitochondrial 1A precursor [Homo
sapiens]
Length = 417
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 74 ERLLPLAGGSFFWPH--------PPNHGYGLLPGALVLLALLSKE 110
ERL+ G F W P N G GL G + L LLSK+
Sbjct: 294 ERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPLLSKD 338
>gi|14165278 hypothetical protein LOC84418 [Homo sapiens]
Length = 97
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 66 APMPAEPPERLLPLAGGSFFWPHPPNHGY 94
AP P PP+ P+ G P+PP GY
Sbjct: 16 APYPPYPPQ---PMGPGPMGGPYPPPQGY 41
>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
Length = 254
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
F PL LL+L Q S ++ D+ + + L+ + GHS L P
Sbjct: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHS--LQVPK 112
Query: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
MP E P+ L P+ FW H P+
Sbjct: 113 LELMPLETPQALPPMLVHGTFWKHWPS 139
>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
Length = 216
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
F PL LL+L Q S ++ D+ + + L+ + GHS L P
Sbjct: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHS--LQVPK 112
Query: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
MP E P+ L P+ FW H P+
Sbjct: 113 LELMPLETPQALPPMLVHGTFWKHWPS 139
>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
Length = 204
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
F PL LL+L Q S ++ D+ + + L+ + GHS L P
Sbjct: 6 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHS--LQVPK 63
Query: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
MP E P+ L P+ FW H P+
Sbjct: 64 LELMPLETPQALPPMLVHGTFWKHWPS 90
>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
F PL LL+L Q S ++ D+ + + L+ + GHS L P
Sbjct: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHS--LQVPK 112
Query: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
MP E P+ L P+ FW H P+
Sbjct: 113 LELMPLETPQALPPMLVHGTFWKHWPS 139
>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
F PL LL+L Q S ++ D+ + + L+ + GHS L P
Sbjct: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHS--LQVPK 112
Query: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
MP E P+ L P+ FW H P+
Sbjct: 113 LELMPLETPQALPPMLVHGTFWKHWPS 139
>gi|112382285 exostoses-like 1 [Homo sapiens]
Length = 676
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 48 QSQAHLEGRSIGHSSLLWAPMPAEPPERLLPLAGGS 83
Q + EGR S+L+W P +PP +L+ GS
Sbjct: 410 QQGSRPEGR---FSALIWVGPPGQPPLKLIQAVAGS 442
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 29 GQTIFLSVCHARKSSDSKTQSQAHLEGRSIGHSSLLWAPM-PAEPPERLLPLA------- 80
GQ + HA +S+SK + + + + + SS + +P+ P+ + PLA
Sbjct: 518 GQGLSSRESHAHSASESKPKERPAIPPK-LSKSSPVGSPVSPSAGGPPVSPLADLSDGSS 576
Query: 81 GGSFFWPHPPNHG 93
GGS P PP+ G
Sbjct: 577 GGSSIGPQPPSQG 589
>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
Length = 172
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVC 37
MSS S++ G S L PF P D LG +F +C
Sbjct: 72 MSSSDSDSDWDGGSRLSPFLPHD---HLGLAVFSMLC 105
>gi|110578660 transmembrane protein 91 isoform b [Homo sapiens]
Length = 139
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVC 37
MSS S++ G S L PF P D LG +F +C
Sbjct: 72 MSSSDSDSDWDGGSRLSPFLPHD---HLGLAVFSMLC 105
>gi|149588874 transmembrane protein 91 isoform d [Homo sapiens]
Length = 127
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVC 37
MSS S++ G S L PF P D LG +F +C
Sbjct: 72 MSSSDSDSDWDGGSRLSPFLPHD---HLGLAVFSMLC 105
>gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVC 37
MSS S++ G S L PF P D LG +F +C
Sbjct: 72 MSSSDSDSDWDGGSRLSPFLPHD---HLGLAVFSMLC 105
>gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVC 37
MSS S++ G S L PF P D LG +F +C
Sbjct: 72 MSSSDSDSDWDGGSRLSPFLPHD---HLGLAVFSMLC 105
>gi|149588540 transmembrane protein 91 isoform e [Homo sapiens]
Length = 123
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MSSGSSEARIKGTSSLPPFYPLDQLLRLGQTIFLSVC 37
MSS S++ G S L PF P D LG +F +C
Sbjct: 72 MSSSDSDSDWDGGSRLSPFLPHD---HLGLAVFSMLC 105
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 68 MPAEPPERLLPLAGGSFFWPHPPNH----GYGLLPGALVLL 104
+PA PP LLP A S P P + G GLL +VLL
Sbjct: 34 VPASPPASLLPPASES---PEPLSQQWTAGMGLLMALIVLL 71
>gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo
sapiens]
Length = 345
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 39 ARKSSDSKTQSQAHLEGRSIGHSSLLWAPMPAEPPE-RLLPLAGGSFFWP 87
AR+SS S+ +S RSI ++L+W A R + L GSF P
Sbjct: 79 ARRSSASRGRSPPRARKRSIPPAALMWRVRRARSARLRGVSLVAGSFSPP 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,181,759
Number of Sequences: 37866
Number of extensions: 237580
Number of successful extensions: 764
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 33
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.