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Search of human proteins with 239743729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743729 PREDICTED: similar to contactin associated
protein-like 3B [Homo sapiens]
(380 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743729 PREDICTED: similar to contactin associated protein-... 782 0.0
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2... 723 0.0
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1... 723 0.0
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens] 722 0.0
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap... 551 e-157
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap... 448 e-126
gi|18640734 contactin associated protein-like 5 [Homo sapiens] 427 e-120
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 366 e-101
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 246 2e-65
gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Ho... 89 7e-18
gi|105990535 coagulation factor V precursor [Homo sapiens] 86 7e-17
gi|62420886 discoidin domain receptor family, member 2 precursor... 84 2e-16
gi|62420884 discoidin domain receptor family, member 2 precursor... 84 2e-16
gi|38327632 discoidin domain receptor family, member 1 isoform b... 79 7e-15
gi|83977452 discoidin domain receptor family, member 1 isoform c... 79 7e-15
gi|83977450 discoidin domain receptor family, member 1 isoform a... 79 7e-15
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 78 2e-14
gi|10518506 coagulation factor VIII isoform b precursor [Homo sa... 77 2e-14
gi|4503647 coagulation factor VIII isoform a precursor [Homo sap... 77 2e-14
gi|41872572 neuropilin 2 isoform 3 precursor [Homo sapiens] 77 3e-14
gi|41872567 neuropilin 2 isoform 5 precursor [Homo sapiens] 77 3e-14
gi|41872562 neuropilin 2 isoform 1 precursor [Homo sapiens] 77 3e-14
gi|41872557 neuropilin 2 isoform 6 precursor [Homo sapiens] 77 3e-14
gi|41872544 neuropilin 2 isoform 4 precursor [Homo sapiens] 77 3e-14
gi|41872533 neuropilin 2 isoform 2 precursor [Homo sapiens] 77 3e-14
gi|66864913 neuropilin 1 isoform c [Homo sapiens] 75 7e-14
gi|66912178 neuropilin 1 isoform b [Homo sapiens] 75 7e-14
gi|182508169 neuropilin 1 isoform a [Homo sapiens] 75 7e-14
gi|31317224 EGF-like repeats and discoidin I-like domains-contai... 75 1e-13
gi|10835083 X-linked juvenile retinoschisis protein precursor [H... 73 4e-13
>gi|239743729 PREDICTED: similar to contactin associated
protein-like 3B [Homo sapiens]
Length = 380
Score = 782 bits (2019), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK
Sbjct: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMELA 360
SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMELA
Sbjct: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMELA 360
Query: 361 HGLQDQNLKISLTVCHQTTQ 380
HGLQDQNLKISLTVCHQTTQ
Sbjct: 361 HGLQDQNLKISLTVCHQTTQ 380
>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
[Homo sapiens]
Length = 1207
Score = 723 bits (1866), Expect = 0.0
Identities = 352/357 (98%), Positives = 354/357 (99%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCD+PLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIK K
Sbjct: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELL TQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
SSNLDLNFEISFGGI +PGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM
Sbjct: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
Score = 35.4 bits (80), Expect = 0.086
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIA---PVTLTLG 264
++ +F+ G LL E Q G+ V FL G KL A P +T G
Sbjct: 394 VTFQFRTWNRAGHLLFGELQRGSG--------SFVLFLKDGKLKLSLFQAGQSPRNVTAG 445
Query: 265 SLLDDQHWHSVLIELLHTQVNFTVDKHT 292
+ L+D WHSV + +N VD T
Sbjct: 446 AGLNDGQWHSVSFSAKWSHMNVVVDDDT 473
>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
[Homo sapiens]
Length = 1288
Score = 723 bits (1866), Expect = 0.0
Identities = 352/357 (98%), Positives = 354/357 (99%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCD+PLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIK K
Sbjct: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELL TQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
SSNLDLNFEISFGGI +PGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM
Sbjct: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
Score = 35.4 bits (80), Expect = 0.086
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIA---PVTLTLG 264
++ +F+ G LL E Q G+ V FL G KL A P +T G
Sbjct: 394 VTFQFRTWNRAGHLLFGELQRGSG--------SFVLFLKDGKLKLSLFQAGQSPRNVTAG 445
Query: 265 SLLDDQHWHSVLIELLHTQVNFTVDKHT 292
+ L+D WHSV + +N VD T
Sbjct: 446 AGLNDGQWHSVSFSAKWSHMNVVVDDDT 473
Score = 34.7 bits (78), Expect = 0.15
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 212 FKAMQSNGILLHREGQHGNHITLEL-IKRKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK S+G+ + G + I +EL ++ F + GN T+ T +D
Sbjct: 821 FKTTVSSGVFMENLGIT-DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTP-----FNDN 874
Query: 271 HWHSVLIELLHTQVNFTVDKHTHHFQ-AKGDSS-NLDLNFEISFGGIPTPGRSRAFTRKS 328
WH V E + VD+ Q A D L LN ++ GG T ++
Sbjct: 875 QWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGTAT-------RQRG 927
Query: 329 FHGCLENLYYNGV 341
F GC+ +L NGV
Sbjct: 928 FLGCIRSLQLNGV 940
>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
Length = 1288
Score = 722 bits (1863), Expect = 0.0
Identities = 352/357 (98%), Positives = 352/357 (98%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
SEVVYFDGQSALLY LDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIK K
Sbjct: 181 SEVVYFDGQSALLYRLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELL TQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
SS LDLNFEISFGGIPTPGRSRAF RKSFHGCLENLYYNGVDVTELAKKHKPQILMM
Sbjct: 301 SSYLDLNFEISFGGIPTPGRSRAFRRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
Score = 34.7 bits (78), Expect = 0.15
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 212 FKAMQSNGILLHREGQHGNHITLEL-IKRKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK S+G+ + G + I +EL ++ F + GN T+ T +D
Sbjct: 821 FKTTVSSGVFMENLGIT-DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTP-----FNDN 874
Query: 271 HWHSVLIELLHTQVNFTVDKHTHHFQ-AKGDSS-NLDLNFEISFGGIPTPGRSRAFTRKS 328
WH V E + VD+ Q A D L LN ++ GG T ++
Sbjct: 875 QWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGTAT-------RQRG 927
Query: 329 FHGCLENLYYNGV 341
F GC+ +L NGV
Sbjct: 928 FLGCIRSLQLNGV 940
Score = 33.1 bits (74), Expect = 0.43
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLP---STIAPVTLTLG 264
++ +F+ G LL E + G+ V FL G KL +P +T G
Sbjct: 394 VTFQFRTWNRAGHLLFGELRRGSG--------SFVLFLKDGKLKLSLFQPGQSPRNVTAG 445
Query: 265 SLLDDQHWHSVLIELLHTQVNFTVDKHT 292
+ L+D WHSV + +N VD T
Sbjct: 446 AGLNDGQWHSVSFSAKWSHMNVVVDDDT 473
>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo
sapiens]
Length = 1308
Score = 551 bits (1420), Expect = e-157
Identities = 263/357 (73%), Positives = 306/357 (85%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
M SV AVLK LLLL TQ W+ V AGN DCD PL SALP++SFSSSSELSSSHGPGF+R
Sbjct: 1 MGSVTGAVLKTLLLLSTQNWNRVEAGNSYDCDDPLVSALPQASFSSSSELSSSHGPGFAR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGW+PLVSNKYQWLQIDLGERMEVTAVATQGGYGSS+WVTSYLLMFSD G NW
Sbjct: 61 LNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSNWVTSYLLMFSDSGWNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYR+E+SIWGF GN NADSVV+YRLQP +ARFLRF+PL WNP+GRIGMRIEV+GCAY+
Sbjct: 121 KQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWNPKGRIGMRIEVFGCAYR 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
SEVV DG+S+LLY D+K L PI+D+ISLKFK MQS+GILLHREG +G+HITL+L + +
Sbjct: 181 SEVVDLDGKSSLLYRFDQKSLSPIKDIISLKFKTMQSDGILLHREGPNGDHITLQLRRAR 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
L +NSG AKLPST V LTLGSLLDDQHWHSVLI+ L QVNFTVD+H HHF A+G+
Sbjct: 241 LFLLINSGEAKLPSTSTLVNLTLGSLLDDQHWHSVLIQRLGKQVNFTVDEHRHHFHARGE 300
Query: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
+ ++L++EISFGGIP PG+S +F ++FHGCLENLYYNGVD+ +LAK+ KPQI+ M
Sbjct: 301 FNLMNLDYEISFGGIPAPGKSVSFPHRNFHGCLENLYYNGVDIIDLAKQQKPQIIAM 357
Score = 39.3 bits (90), Expect = 0.006
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFF-LNSGNAKLPSTIAPVTLTLGSL 266
+S FK S+G+ L G + I +EL +V F + GN ++ T
Sbjct: 817 VSFFFKTTASSGVFLENLGI-ADFIRIELRSPTVVTFSFDVGNGPFEISVQSPTH----- 870
Query: 267 LDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSN--LDLNFEISFGGIPTPGRSRAF 324
+D WH V +E + + VD+ T Q + L LN ++ GG T
Sbjct: 871 FNDNQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLNSQLFVGGTAT------- 923
Query: 325 TRKSFHGCLENLYYNG--VDVTELAK 348
++ F GC+ +L NG +D+ E A+
Sbjct: 924 RQRGFLGCIRSLQLNGMTLDLEERAQ 949
Score = 33.9 bits (76), Expect = 0.25
Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 209 SLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTI-----APVTLTL 263
+ +F+ G+LL E L+LI ++ FL+ G KL S + P +T
Sbjct: 395 TFQFRTWNKAGLLLFSE--------LQLISGGILLFLSDG--KLKSNLYQPGKLPSDITA 444
Query: 264 GSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGIPTP--GRS 321
G L+D WHSV + ++ VD + FGG P G
Sbjct: 445 GVELNDGQWHSVSLSAKKNHLSVAVDGQMASAAPLLGPEQIYSGGTYYFGGCPDKSFGSK 504
Query: 322 RAFTRKSFHGCLENLYYNG 340
F GC+ + +G
Sbjct: 505 CKSPLGGFQGCMRLISISG 523
>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo
sapiens]
Length = 1235
Score = 448 bits (1152), Expect = e-126
Identities = 212/280 (75%), Positives = 246/280 (87%)
Query: 30 DCDAPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERM 89
DCD PL SALP++SFSSSSELSSSHGPGF+RLNRRDGAGGW+PLVSNKYQWLQIDLGERM
Sbjct: 5 DCDDPLVSALPQASFSSSSELSSSHGPGFARLNRRDGAGGWSPLVSNKYQWLQIDLGERM 64
Query: 90 EVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPP 149
EVTAVATQGGYGSS+WVTSYLLMFSD G NWKQYR+E+SIWGF GN NADSVV+YRLQP
Sbjct: 65 EVTAVATQGGYGSSNWVTSYLLMFSDSGWNWKQYRQEDSIWGFSGNANADSVVYYRLQPS 124
Query: 150 FEARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYTLDKKPLKPIRDVIS 209
+ARFLRF+PL WNP+GRIGMRIEV+GCAY+SEVV DG+S+LLY D+K L PI+D+IS
Sbjct: 125 IKARFLRFIPLEWNPKGRIGMRIEVFGCAYRSEVVDLDGKSSLLYRFDQKSLSPIKDIIS 184
Query: 210 LKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIAPVTLTLGSLLDD 269
LKFK MQS+GILLHREG +G+HITL+L + +L +NSG AKLPST V LTLGSLLDD
Sbjct: 185 LKFKTMQSDGILLHREGPNGDHITLQLRRARLFLLINSGEAKLPSTSTLVNLTLGSLLDD 244
Query: 270 QHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFE 309
QHWHSVLI+ L QVNFTVD+H HHF A+G+ + ++L++E
Sbjct: 245 QHWHSVLIQRLGKQVNFTVDEHRHHFHARGEFNLMNLDYE 284
Score = 39.3 bits (90), Expect = 0.006
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFF-LNSGNAKLPSTIAPVTLTLGSL 266
+S FK S+G+ L G + I +EL +V F + GN ++ T
Sbjct: 744 VSFFFKTTASSGVFLENLGI-ADFIRIELRSPTVVTFSFDVGNGPFEISVQSPTH----- 797
Query: 267 LDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSN--LDLNFEISFGGIPTPGRSRAF 324
+D WH V +E + + VD+ T Q + L LN ++ GG T
Sbjct: 798 FNDNQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLNSQLFVGGTAT------- 850
Query: 325 TRKSFHGCLENLYYNG--VDVTELAK 348
++ F GC+ +L NG +D+ E A+
Sbjct: 851 RQRGFLGCIRSLQLNGMTLDLEERAQ 876
Score = 33.9 bits (76), Expect = 0.25
Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 209 SLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTI-----APVTLTL 263
+ +F+ G+LL E L+LI ++ FL+ G KL S + P +T
Sbjct: 322 TFQFRTWNKAGLLLFSE--------LQLISGGILLFLSDG--KLKSNLYQPGKLPSDITA 371
Query: 264 GSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGIPTP--GRS 321
G L+D WHSV + ++ VD + FGG P G
Sbjct: 372 GVELNDGQWHSVSLSAKKNHLSVAVDGQMASAAPLLGPEQIYSGGTYYFGGCPDKSFGSK 431
Query: 322 RAFTRKSFHGCLENLYYNG 340
F GC+ + +G
Sbjct: 432 CKSPLGGFQGCMRLISISG 450
>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
Length = 1306
Score = 427 bits (1099), Expect = e-120
Identities = 206/344 (59%), Positives = 262/344 (76%), Gaps = 2/344 (0%)
Query: 11 VLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGW 70
VL LL + W +CD PLAS L +FSSSS+L+ +H P ++LN R G GGW
Sbjct: 10 VLTLLFSGLWHLGLTATNYNCDDPLASLLSPMAFSSSSDLTGTHSP--AQLNWRVGTGGW 67
Query: 71 TPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIW 130
+P SN QWLQ+DLG R+E+TAVATQG YGSSDWVTSY LMFSD GRNWKQY++E+SIW
Sbjct: 68 SPADSNAQQWLQMDLGNRVEITAVATQGRYGSSDWVTSYSLMFSDTGRNWKQYKQEDSIW 127
Query: 131 GFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQS 190
F GN NADSVVH++L ARF+RF+PL WNP G+IGMR+EVYGC+YKS+V FDG+S
Sbjct: 128 TFAGNMNADSVVHHKLLHSVRARFVRFVPLEWNPSGKIGMRVEVYGCSYKSDVADFDGRS 187
Query: 191 ALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNA 250
+LLY ++K + ++DVISLKFK+MQ +G+L H EGQ G+HITLEL K +L LN G++
Sbjct: 188 SLLYRFNQKLMSTLKDVISLKFKSMQGDGVLFHGEGQRGDHITLELQKGRLALHLNLGDS 247
Query: 251 KLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEI 310
K + + + TLGSLLDDQHWHSVLIE + QVNFTVDKHT HF+ KG++ LD+++E+
Sbjct: 248 KARLSSSLPSATLGSLLDDQHWHSVLIERVGKQVNFTVDKHTQHFRTKGETDALDIDYEL 307
Query: 311 SFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQI 354
SFGGIP PG+ F +K+FHGC+ENLYYNGV++ +LAK+ K QI
Sbjct: 308 SFGGIPVPGKPGTFLKKNFHGCIENLYYNGVNIIDLAKRRKHQI 351
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIK-RKLVFFLNSGNAKLPSTIAPVTLTLGS- 265
IS FK +G+ L G + I LE+ ++ F ++ GN PV L + S
Sbjct: 815 ISFFFKTTALSGVFLENLGIK-DFIRLEISSPSEITFAIDVGNG-------PVELVVQSP 866
Query: 266 -LLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSN--LDLNFEISFGGIPTPGRSR 322
LL+D WH V E + + VD + + + L LN ++ GG +
Sbjct: 867 SLLNDNQWHYVRAERNLKETSLQVDNLPRSTRETSEEGHFRLQLNSQLFVGGTSS----- 921
Query: 323 AFTRKSFHGCLENLYYNG--VDVTELAK 348
+K F GC+ +L+ NG +D+ E AK
Sbjct: 922 --RQKGFLGCIRSLHLNGQKMDLEERAK 947
Score = 32.3 bits (72), Expect = 0.73
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIAPVTLTLGSLL 267
+S +F+ +G+LL E G+ L ++ ++ + K+ +A + GS L
Sbjct: 391 VSFQFRTWNKDGLLLSTELSEGSGTLLLSLEGGILRLVIQ---KMTERVAEILT--GSNL 445
Query: 268 DDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGIPTPGRSRAFTR- 326
+D WHSV I ++ T+D + FGG P
Sbjct: 446 NDGLWHSVSINARRNRITLTLDDEAAPPAPDSTWVQIYSGNSYYFGGCPDNLTDSQCLNP 505
Query: 327 -KSFHGCLENLY 337
K+F GC+ ++
Sbjct: 506 IKAFQGCMRLIF 517
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo
sapiens]
Length = 1331
Score = 366 bits (940), Expect = e-101
Identities = 165/321 (51%), Positives = 230/321 (71%)
Query: 31 CDAPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERME 90
CD PL S LP +FSSSS +S S+ PG++++N+R GAGGW+P S+ YQWLQ+D G R +
Sbjct: 35 CDEPLVSGLPHVAFSSSSSISGSYSPGYAKINKRGGAGGWSPSDSDHYQWLQVDFGNRKQ 94
Query: 91 VTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPF 150
++A+ATQG Y SSDWVT Y +++SD GRNWK Y ++ +IW FPGN N+D VV + LQ P
Sbjct: 95 ISAIATQGRYSSSDWVTQYRMLYSDTGRNWKPYHQDGNIWAFPGNINSDGVVRHELQHPI 154
Query: 151 EARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISL 210
AR++R +PL WN GRIG+RIEVYGC+Y ++V+ FDG L Y K +K ++DVI+L
Sbjct: 155 IARYVRIVPLDWNGEGRIGLRIEVYGCSYWADVINFDGHVVLPYRFRNKKMKTLKDVIAL 214
Query: 211 KFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK +S G++LH EGQ G++ITLEL K KLV LN G+ +L ++ GSLLDD
Sbjct: 215 NFKTSESEGVILHGEGQQGDYITLELKKAKLVLSLNLGSNQLGPIYGHTSVMTGSLLDDH 274
Query: 271 HWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGIPTPGRSRAFTRKSFH 330
HWHSV+IE +N T+D+ HF+ G+ LDL++EI+FGGIP G+ + +RK+F
Sbjct: 275 HWHSVVIERQGRSINLTLDRSMQHFRTNGEFDYLDLDYEITFGGIPFSGKPSSSSRKNFK 334
Query: 331 GCLENLYYNGVDVTELAKKHK 351
GC+E++ YNGV++T+LA++ K
Sbjct: 335 GCMESINYNGVNITDLARRKK 355
Score = 37.0 bits (84), Expect = 0.029
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFF-LNSGNAKLPSTIAPVTLTLGSL 266
IS FK + G+ L G+ + I LEL V F + GN + + T
Sbjct: 823 ISFYFKTLTPWGVFLENMGKE-DFIKLELKSATEVSFSFDVGNGPVEIVVRSPTP----- 876
Query: 267 LDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDS--SNLDLNFEISFGGIPTPGRSRAF 324
L+D WH V E Q + VD+ + + L+L ++ GG A
Sbjct: 877 LNDDQWHRVTAERNVKQASLQVDRLPQQIRKAPTEGHTRLELYSQLFVGG--------AG 928
Query: 325 TRKSFHGCLENLYYNGV--DVTELAK 348
++ F GC+ +L NGV D+ E AK
Sbjct: 929 GQQGFLGCIRSLRMNGVTLDLEERAK 954
Score = 34.7 bits (78), Expect = 0.15
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 208 ISLKFKAMQSNGILL--HREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIAPVTLTLGS 265
+S +F+ NG+L+ H GN + ++L + K+ +N K+ + + ++ GS
Sbjct: 397 VSFQFRTWNPNGLLVFSHFADNLGN-VEIDLTESKVGVHINITQTKM----SQIDISSGS 451
Query: 266 LLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGI--PTPGRSRA 323
L+D WH V T+D + + FGG S +
Sbjct: 452 GLNDGQWHEVRFLAKENFAILTIDGDEASAVRTNSPLQVKTGEKYFFGGFLNQMNNSSHS 511
Query: 324 FTRKSFHGCLENLYYNG--VDVTELAKK 349
+ SF GC++ + + V++ E+A++
Sbjct: 512 VLQPSFQGCMQLIQVDDQLVNLYEVAQR 539
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 246 bits (628), Expect = 2e-65
Identities = 121/324 (37%), Positives = 188/324 (58%), Gaps = 3/324 (0%)
Query: 31 CDAPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERME 90
CD L L S +SS S P F+RL+ G GW+P + + WLQIDL ++
Sbjct: 25 CDEELVGPLYARSLGASSYYSLLTAPRFARLH---GISGWSPRIGDPNPWLQIDLMKKHR 81
Query: 91 VTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPF 150
+ AVATQG + S DWVT Y+L++ D +W + + F GN N +VV + L F
Sbjct: 82 IRAVATQGSFNSWDWVTRYMLLYGDRVDSWTPFYQRGHNSTFFGNVNESAVVRHDLHFHF 141
Query: 151 EARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISL 210
AR++R +PLAWNPRG+IG+R+ +YGC YK++++YFDG A+ Y + + + DV +
Sbjct: 142 TARYIRIVPLAWNPRGKIGLRLGLYGCPYKADILYFDGDDAISYRFPRGVSRSLWDVFAF 201
Query: 211 KFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK + +G+LLH EG G+++TLEL L+ ++ G++ + T++ G +L+DQ
Sbjct: 202 SFKTEEKDGLLLHAEGAQGDYVTLELEGAHLLLHMSLGSSPIQPRPGHTTVSAGGVLNDQ 261
Query: 271 HWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGIPTPGRSRAFTRKSFH 330
HWH V ++ VNFT+D + F GD L+L+ E+ GG+ R R +F
Sbjct: 262 HWHYVRVDRFGRDVNFTLDGYVQRFILNGDFERLNLDTEMFIGGLVGAARKNLAYRHNFR 321
Query: 331 GCLENLYYNGVDVTELAKKHKPQI 354
GC+EN+ +N V++ +LA + +I
Sbjct: 322 GCIENVIFNRVNIADLAVRRHSRI 345
Score = 33.1 bits (74), Expect = 0.43
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 11/140 (7%)
Query: 205 RDVISLKFKAMQSNGILLH-REGQHGNHITLELIKRKL-VFFLNSGNAKLPSTIAPVTLT 262
R +S +F+ G+LL R G H+ L L + ++ V SG KL
Sbjct: 382 RLAVSFRFRTWDLTGLLLFSRLGDGLGHVELTLSEGQVNVSIAQSGRKKLQ-------FA 434
Query: 263 LGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGIPTPGR-- 320
G L+D WH V ++D + FGG P P
Sbjct: 435 AGYRLNDGFWHEVNFVAQENHAVISIDDVEGAEVRVSYPLLIRTGTSYFFGGCPKPASRW 494
Query: 321 SRAFTRKSFHGCLENLYYNG 340
+ +FHGC+E L +G
Sbjct: 495 DCHSNQTAFHGCMELLKVDG 514
>gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Homo
sapiens]
Length = 387
Score = 89.0 bits (219), Expect = 7e-18
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 31 CDAPLA---SALPRSSFSSSSELSS------SHGPGFSRLNRRDGAGGWTPLVSNKYQWL 81
C PL +++P ++SS + S P ++RL+++ W QWL
Sbjct: 230 CANPLGLKNNSIPDKQITASSSYKTWGLHLFSWNPSYARLDKQGNFNAWVAGSYGNDQWL 289
Query: 82 QIDLGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYR--REESIWGFPGNTN 137
Q+DLG EVT + TQG +GS +V SY + +S+ NW +Y+ R S FPGN +
Sbjct: 290 QVDLGSSKEVTGIITQGARNFGSVQFVASYKVAYSNDSANWTEYQDPRTGSSKIFPGNWD 349
Query: 138 ADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
S + P AR++R LP+AW+ RI +R+E+ GC
Sbjct: 350 NHSHKKNLFETPILARYVRILPVAWH--NRIALRLELLGC 387
Score = 57.8 bits (138), Expect = 2e-08
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 17 TQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVS 75
T+ P+G N ++ +A++ R +F L H P +RLNR WTP +
Sbjct: 68 TKCVEPLGLENGNIANSQIAASSVRVTF-----LGLQHWVPELARLNRAGMVNAWTPSSN 122
Query: 76 NKYQWLQIDLGERMEVTAVATQGG--YGSSDWVTSYLLMFSDGGRNW-------KQYRRE 126
+ W+Q++L RM VT V TQG S +++ ++ + +S G + K+++
Sbjct: 123 DDNPWIQVNLLRRMWVTGVVTQGASRLASHEYLKAFKVAYSLNGHEFDFIHDVNKKHKE- 181
Query: 127 ESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
F GN N ++V + P EA+++R P + + +R E+ GC
Sbjct: 182 -----FVGNWNKNAVHVNLFETPVEAQYVRLYPTSCHT--ACTLRFELLGC 225
>gi|105990535 coagulation factor V precursor [Homo sapiens]
Length = 2224
Score = 85.5 bits (210), Expect = 7e-17
Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 31 CDAPLA---SALPRSSFSSSSELSSSHG----PGFSRLNRRDGAGGWTPLVSNKYQWLQI 83
C PL + ++SS S G P +RLN + W +N QWL+I
Sbjct: 2066 CSTPLGMENGKIENKQITASSFKKSWWGDYWEPFRARLNAQGRVNAWQAKANNNKQWLEI 2125
Query: 84 DLGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYRREESIWG--FPGNTNAD 139
DL + ++TA+ TQG S +V SY + +S+ G WK YR + S+ F GNTN
Sbjct: 2126 DLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQGVEWKPYRLKSSMVDKIFEGNTNTK 2185
Query: 140 SVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
V PP +RF+R +P WN I +R+E++GC
Sbjct: 2186 GHVKNFFNPPIISRFIRVIPKTWNQ--SIALRLELFGC 2221
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 30 DCDAP--LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWT--PLVSN--KYQWLQI 83
DC P L++ + S +SE P +RLN W+ L + W+Q+
Sbjct: 1906 DCRMPMGLSTGIISDSQIKASEFLGYWEPRLARLNNGGSYNAWSVEKLAAEFASKPWIQV 1965
Query: 84 DLGERMEVTAVATQGG--YGSSDWVTSYLLMFSDGGRNWKQYRREES--IWGFPGNTNAD 139
D+ + + +T + TQG Y S + T + + +S NW+ ++ + + F GN++A
Sbjct: 1966 DMQKEVIITGIQTQGAKHYLKSCYTTEFYVAYSSNQINWQIFKGNSTRNVMYFNGNSDAS 2025
Query: 140 SVVHYRLQPPFEARFLRFLPL-AWNPRGRIGMRIEVYGC 177
++ + PP AR++R P A+N R +R+E+ GC
Sbjct: 2026 TIKENQFDPPIVARYIRISPTRAYN---RPTLRLELQGC 2061
>gi|62420886 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 84.3 bits (207), Expect = 2e-16
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 8 VLKVLLLLPTQTWSPVGAGNPPDCDAPLASA---LPRSSFSSSSELSSSHGPGFSRLNRR 64
+L + LLLP + S NP C PL + +P ++SS+ S S + RL+
Sbjct: 8 LLVLFLLLPILS-SAKAQVNPAICRYPLGMSGGQIPDEDITASSQWSESTAAKYGRLDSE 66
Query: 65 DGAGGWTPLV----SNKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLLMFSDGG 117
+G G W P + + ++LQIDL +T V TQG + ++ Y + +S G
Sbjct: 67 EGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG 126
Query: 118 RNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
W +R GN+N + L+PP ARF+RF+P+ + + MR+E+YGC
Sbjct: 127 TRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVT-DHSMNVCMRVELYGC 185
Query: 178 AYKSEVVYFDGQSALLYTL 196
+ +V ++ + + L
Sbjct: 186 VWLDGLVSYNAPAGQQFVL 204
>gi|62420884 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 84.3 bits (207), Expect = 2e-16
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 8 VLKVLLLLPTQTWSPVGAGNPPDCDAPLASA---LPRSSFSSSSELSSSHGPGFSRLNRR 64
+L + LLLP + S NP C PL + +P ++SS+ S S + RL+
Sbjct: 8 LLVLFLLLPILS-SAKAQVNPAICRYPLGMSGGQIPDEDITASSQWSESTAAKYGRLDSE 66
Query: 65 DGAGGWTPLV----SNKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLLMFSDGG 117
+G G W P + + ++LQIDL +T V TQG + ++ Y + +S G
Sbjct: 67 EGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG 126
Query: 118 RNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
W +R GN+N + L+PP ARF+RF+P+ + + MR+E+YGC
Sbjct: 127 TRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVT-DHSMNVCMRVELYGC 185
Query: 178 AYKSEVVYFDGQSALLYTL 196
+ +V ++ + + L
Sbjct: 186 VWLDGLVSYNAPAGQQFVL 204
>gi|38327632 discoidin domain receptor family, member 1 isoform b
[Homo sapiens]
Length = 876
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLAS---ALPRSSFSSSSELSSSHGPG 57
M A + L +LLL+ + G +P C L +P S S+SS S S
Sbjct: 1 MGPEALSSLLLLLLVASGDADMKGHFDPAKCRYALGMQDRTIPDSDISASSSWSDSTAAR 60
Query: 58 FSRLNRRDGAGGWTPLVS---NKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLL 111
SRL DG G W P S + ++LQ+DL V V TQG + ++ SY L
Sbjct: 61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120
Query: 112 MFSDGGRNWKQYRREESIWG---FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRI 168
+S GR W ++ WG GN + + VV L PP AR +RF P A +
Sbjct: 121 RYSRDGRRWMGWKDR---WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMS-V 176
Query: 169 GMRIEVYGCAYKSEVVYF 186
+R+E+YGC ++ ++ +
Sbjct: 177 CLRVELYGCLWRDGLLSY 194
>gi|83977452 discoidin domain receptor family, member 1 isoform c
[Homo sapiens]
Length = 919
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLAS---ALPRSSFSSSSELSSSHGPG 57
M A + L +LLL+ + G +P C L +P S S+SS S S
Sbjct: 1 MGPEALSSLLLLLLVASGDADMKGHFDPAKCRYALGMQDRTIPDSDISASSSWSDSTAAR 60
Query: 58 FSRLNRRDGAGGWTPLVS---NKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLL 111
SRL DG G W P S + ++LQ+DL V V TQG + ++ SY L
Sbjct: 61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120
Query: 112 MFSDGGRNWKQYRREESIWG---FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRI 168
+S GR W ++ WG GN + + VV L PP AR +RF P A +
Sbjct: 121 RYSRDGRRWMGWKDR---WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMS-V 176
Query: 169 GMRIEVYGCAYKSEVVYF 186
+R+E+YGC ++ ++ +
Sbjct: 177 CLRVELYGCLWRDGLLSY 194
>gi|83977450 discoidin domain receptor family, member 1 isoform a
[Homo sapiens]
Length = 913
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLAS---ALPRSSFSSSSELSSSHGPG 57
M A + L +LLL+ + G +P C L +P S S+SS S S
Sbjct: 1 MGPEALSSLLLLLLVASGDADMKGHFDPAKCRYALGMQDRTIPDSDISASSSWSDSTAAR 60
Query: 58 FSRLNRRDGAGGWTPLVS---NKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLL 111
SRL DG G W P S + ++LQ+DL V V TQG + ++ SY L
Sbjct: 61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120
Query: 112 MFSDGGRNWKQYRREESIWG---FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRI 168
+S GR W ++ WG GN + + VV L PP AR +RF P A +
Sbjct: 121 RYSRDGRRWMGWKDR---WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMS-V 176
Query: 169 GMRIEVYGCAYKSEVVYF 186
+R+E+YGC ++ ++ +
Sbjct: 177 CLRVELYGCLWRDGLLSY 194
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 77.8 bits (190), Expect = 2e-14
Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 46 SSSELSSSHGPGFSRLNRRDGA-------GGWTPLVSNKYQWLQIDLGERMEVTAVATQG 98
+SS L G RLN + GA G W + QW+++D T V TQG
Sbjct: 402 ASSMLRHGLGAQRGRLNMQTGATEDDYYDGAWCAEDDARTQWIEVDTRRTTRFTGVITQG 461
Query: 99 GYGS--SDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLR 156
S D+VT++ + FS+ + W Y F GN + D+ V L P ARF+R
Sbjct: 462 RDSSIHDDFVTTFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIR 521
Query: 157 FLPLAWNPRGRIGMRIEVYGCAYKSEVVYF 186
PL WN G + MR+EV GC+ Y+
Sbjct: 522 IYPLTWN--GSLCMRLEVLGCSVAPVYSYY 549
>gi|10518506 coagulation factor VIII isoform b precursor [Homo
sapiens]
Length = 216
Score = 77.4 bits (189), Expect = 2e-14
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 31 CDAPL---ASALPRSSFSSSS---ELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQID 84
C PL + A+ + ++SS + ++ P +RL+ + + W P V+N +WLQ+D
Sbjct: 58 CSMPLGMESKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVD 117
Query: 85 LGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+ M+VT V TQG +S +V +L+ S G W + + + F GN ++ + V
Sbjct: 118 FQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPV 177
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
L PP R+LR P +W +I +R+EV GC
Sbjct: 178 VNSLDPPLLTRYLRIHPQSW--VHQIALRMEVLGC 210
Score = 32.0 bits (71), Expect = 0.95
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 132 FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKS 181
F GN ++ + H PP AR++R P ++ R +R+E+ GC S
Sbjct: 10 FFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRST--LRMELMGCDLNS 57
>gi|4503647 coagulation factor VIII isoform a precursor [Homo sapiens]
Length = 2351
Score = 77.4 bits (189), Expect = 2e-14
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 31 CDAPL---ASALPRSSFSSSS---ELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQID 84
C PL + A+ + ++SS + ++ P +RL+ + + W P V+N +WLQ+D
Sbjct: 2193 CSMPLGMESKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVD 2252
Query: 85 LGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+ M+VT V TQG +S +V +L+ S G W + + + F GN ++ + V
Sbjct: 2253 FQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPV 2312
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
L PP R+LR P +W +I +R+EV GC
Sbjct: 2313 VNSLDPPLLTRYLRIHPQSW--VHQIALRMEVLGC 2345
Score = 62.8 bits (151), Expect = 5e-10
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 31 CDAPL--ASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGER 88
C PL AS R ++S P +RL+ W+ + W+++DL
Sbjct: 2040 CQTPLGMASGHIRDFQITASGQYGQWAPKLARLHYSGSINAWS--TKEPFSWIKVDLLAP 2097
Query: 89 MEVTAVATQGGYG--SSDWVTSYLLMFSDGGRNWKQYRREES--IWGFPGNTNADSVVHY 144
M + + TQG SS +++ +++M+S G+ W+ YR + + F GN ++ + H
Sbjct: 2098 MIIHGIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHN 2157
Query: 145 RLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKS 181
PP AR++R P ++ R +R+E+ GC S
Sbjct: 2158 IFNPPIIARYIRLHPTHYSIRST--LRMELMGCDLNS 2192
>gi|41872572 neuropilin 2 isoform 3 precursor [Homo sapiens]
Length = 909
Score = 77.0 bits (188), Expect = 3e-14
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDAPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK--QYRREESIWGFPGNTNADSV 141
V QG G +V + + +S G++W+ Q R + F GN + D+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDT- 557
Query: 142 VHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
R P A+++R P W+P G IGMR+EV GC
Sbjct: 558 PDIRRFDPIPAQYVRVYPERWSPAG-IGMRLEVLGC 592
>gi|41872567 neuropilin 2 isoform 5 precursor [Homo sapiens]
Length = 901
Score = 77.0 bits (188), Expect = 3e-14
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDAPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK--QYRREESIWGFPGNTNADSV 141
V QG G +V + + +S G++W+ Q R + F GN + D+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDT- 557
Query: 142 VHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
R P A+++R P W+P G IGMR+EV GC
Sbjct: 558 PDIRRFDPIPAQYVRVYPERWSPAG-IGMRLEVLGC 592
>gi|41872562 neuropilin 2 isoform 1 precursor [Homo sapiens]
Length = 931
Score = 77.0 bits (188), Expect = 3e-14
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDAPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK--QYRREESIWGFPGNTNADSV 141
V QG G +V + + +S G++W+ Q R + F GN + D+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDT- 557
Query: 142 VHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
R P A+++R P W+P G IGMR+EV GC
Sbjct: 558 PDIRRFDPIPAQYVRVYPERWSPAG-IGMRLEVLGC 592
>gi|41872557 neuropilin 2 isoform 6 precursor [Homo sapiens]
Length = 555
Score = 77.0 bits (188), Expect = 3e-14
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDAPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 35.8 bits (81), Expect = 0.066
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK 121
V QG G +V + + +S G++W+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWE 536
>gi|41872544 neuropilin 2 isoform 4 precursor [Homo sapiens]
Length = 906
Score = 77.0 bits (188), Expect = 3e-14
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDAPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK--QYRREESIWGFPGNTNADSV 141
V QG G +V + + +S G++W+ Q R + F GN + D+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDT- 557
Query: 142 VHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
R P A+++R P W+P G IGMR+EV GC
Sbjct: 558 PDIRRFDPIPAQYVRVYPERWSPAG-IGMRLEVLGC 592
>gi|41872533 neuropilin 2 isoform 2 precursor [Homo sapiens]
Length = 926
Score = 77.0 bits (188), Expect = 3e-14
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDAPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK--QYRREESIWGFPGNTNADSV 141
V QG G +V + + +S G++W+ Q R + F GN + D+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDT- 557
Query: 142 VHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
R P A+++R P W+P G IGMR+EV GC
Sbjct: 558 PDIRRFDPIPAQYVRVYPERWSPAG-IGMRLEVLGC 592
>gi|66864913 neuropilin 1 isoform c [Homo sapiens]
Length = 609
Score = 75.5 bits (184), Expect = 7e-14
Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 45 SSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSD 104
++SS+ S++ SRLN + GWTP + +W+Q+DLG VTAV TQG
Sbjct: 292 TASSQYSTNWSAERSRLNYPEN--GWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET 349
Query: 105 ----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPL 160
+V +Y + S G +W + F GNTN VV P RF+R P
Sbjct: 350 KKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPA 409
Query: 161 AWNPRGRIGMRIEVYGC 177
W I MR EVYGC
Sbjct: 410 TWET--GISMRFEVYGC 424
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 69 GWT-PLVSNKY--QWLQIDLGERMEVTAVATQGGYGSSD--WVTSYLLMFSDGGRNWKQY 123
GW P + Y +WLQIDLGE V + QGG + ++ + + +S+ G +WK
Sbjct: 470 GWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMI 529
Query: 124 R--REESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+ F GN N D+ R P RF+R P G +G+R+E+ GC
Sbjct: 530 MDDSKRKAKSFEGNNNYDT-PELRTFPALSTRFIRIYP-ERATHGGLGLRMELLGC 583
>gi|66912178 neuropilin 1 isoform b [Homo sapiens]
Length = 644
Score = 75.5 bits (184), Expect = 7e-14
Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 45 SSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSD 104
++SS+ S++ SRLN + GWTP + +W+Q+DLG VTAV TQG
Sbjct: 292 TASSQYSTNWSAERSRLNYPEN--GWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET 349
Query: 105 ----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPL 160
+V +Y + S G +W + F GNTN VV P RF+R P
Sbjct: 350 KKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPA 409
Query: 161 AWNPRGRIGMRIEVYGC 177
W I MR EVYGC
Sbjct: 410 TWET--GISMRFEVYGC 424
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 69 GWT-PLVSNKY--QWLQIDLGERMEVTAVATQGGYGSSD--WVTSYLLMFSDGGRNWKQY 123
GW P + Y +WLQIDLGE V + QGG + ++ + + +S+ G +WK
Sbjct: 470 GWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMI 529
Query: 124 R--REESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+ F GN N D+ R P RF+R P G +G+R+E+ GC
Sbjct: 530 MDDSKRKAKSFEGNNNYDT-PELRTFPALSTRFIRIYP-ERATHGGLGLRMELLGC 583
>gi|182508169 neuropilin 1 isoform a [Homo sapiens]
Length = 923
Score = 75.5 bits (184), Expect = 7e-14
Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 45 SSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSD 104
++SS+ S++ SRLN + GWTP + +W+Q+DLG VTAV TQG
Sbjct: 292 TASSQYSTNWSAERSRLNYPEN--GWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET 349
Query: 105 ----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPL 160
+V +Y + S G +W + F GNTN VV P RF+R P
Sbjct: 350 KKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPA 409
Query: 161 AWNPRGRIGMRIEVYGC 177
W I MR EVYGC
Sbjct: 410 TWET--GISMRFEVYGC 424
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 69 GWT-PLVSNKY--QWLQIDLGERMEVTAVATQGGYGSSD--WVTSYLLMFSDGGRNWKQY 123
GW P + Y +WLQIDLGE V + QGG + ++ + + +S+ G +WK
Sbjct: 470 GWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMI 529
Query: 124 R--REESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+ F GN N D+ R P RF+R P G +G+R+E+ GC
Sbjct: 530 MDDSKRKAKSFEGNNNYDT-PELRTFPALSTRFIRIYP-ERATHGGLGLRMELLGC 583
>gi|31317224 EGF-like repeats and discoidin I-like
domains-containing protein 3 [Homo sapiens]
Length = 480
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 56 PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGG--YGSSDWVTSYLLMF 113
P +RL+++ WT +++ QWLQ+DL +VT + TQG +G +V SY L +
Sbjct: 353 PRKARLDKQGKVNAWTSGHNDQSQWLQVDLLVPTKVTGIITQGAKDFGHVQFVGSYKLAY 412
Query: 114 SDGGRNWKQYRREESIWG--FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMR 171
S+ G +W Y+ E+ F GN + D+ + PP AR +R LP +W GRI +R
Sbjct: 413 SNDGEHWTVYQDEKQRKDKVFQGNFDNDTHRKNVIDPPIYARHIRILPWSW--YGRITLR 470
Query: 172 IEVYGC 177
E+ GC
Sbjct: 471 SELLGC 476
Score = 72.8 bits (177), Expect = 5e-13
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 56 PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGG--YGSSDWVTSYLLMF 113
P ++RLN++ WT ++++ W+QI+L +M VT V TQG GS +++ SY + +
Sbjct: 191 PYYARLNKKGLINAWTAAENDRWPWIQINLQRKMRVTGVITQGAKRIGSPEYIKSYKIAY 250
Query: 114 SDGGRNWKQYR----REESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIG 169
S+ G+ W Y+ E+ + F GN + ++ PP +A+++R P R
Sbjct: 251 SNDGKTWAMYKVKGTNEDMV--FRGNIDNNTPYANSFTPPIKAQYVRLYPQVC--RRHCT 306
Query: 170 MRIEVYGC 177
+R+E+ GC
Sbjct: 307 LRMELLGC 314
>gi|10835083 X-linked juvenile retinoschisis protein precursor [Homo
sapiens]
Length = 224
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 59 SRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMF-SDGG 117
+RLN + W + QWLQIDL E ++ + TQG +W+T Y + + +D
Sbjct: 101 ARLNSQGFGCAWLSKFQDSSQWLQIDLKEIKVISGILTQGRCDIDEWMTKYSVQYRTDER 160
Query: 118 RNWKQYRREE-SIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYG 176
NW Y+ + + F GN++ S V L+PP +RF+R +PL W+ RI +R+E+
Sbjct: 161 LNWIYYKDQTGNNRVFYGNSDRTSTVQNLLRPPIISRFIRLIPLGWHV--RIAIRMELLE 218
Query: 177 CAYK 180
C K
Sbjct: 219 CVSK 222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,312,082
Number of Sequences: 37866
Number of extensions: 696186
Number of successful extensions: 2003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 158
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.