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Search of human proteins with 239743493
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743493 PREDICTED: hypothetical protein XP_002342862 [Homo
sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743493 PREDICTED: hypothetical protein XP_002342862 [Homo ... 344 2e-95
gi|239743501 PREDICTED: similar to hCG2042391 [Homo sapiens] 337 2e-93
gi|169209673 PREDICTED: similar to hCG2042391 [Homo sapiens] 213 5e-56
gi|169210658 PREDICTED: similar to hCG2042391 [Homo sapiens] 213 5e-56
gi|169210188 PREDICTED: similar to hCG2042391 [Homo sapiens] 213 5e-56
gi|239750115 PREDICTED: similar to hCG2042391 [Homo sapiens] 207 3e-54
gi|239755573 PREDICTED: similar to ectonucleotide pyrophosphatas... 180 5e-46
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 148 2e-36
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 148 2e-36
gi|45545421 ectonucleotide pyrophosphatase/phosphodiesterase 7 [... 107 4e-24
gi|11034849 ectonucleotide pyrophosphatase/phosphodiesterase 5 (... 50 7e-07
gi|7662358 ectonucleotide pyrophosphatase/phosphodiesterase 4 (p... 40 7e-04
gi|219842244 periphilin 1 isoform 6 [Homo sapiens] 39 0.002
gi|48255929 periphilin 1 isoform 1 [Homo sapiens] 39 0.002
gi|111160296 ectonucleotide pyrophosphatase/phosphodiesterase 3 ... 37 0.006
gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1 ... 36 0.014
gi|195947389 autotaxin isoform 3 preproprotein [Homo sapiens] 33 0.12
gi|91823602 autotaxin isoform 2 preproprotein [Homo sapiens] 33 0.12
gi|170763513 ATP/GTP binding protein 1 [Homo sapiens] 32 0.20
gi|23503267 ectonucleotide pyrophosphatase/phosphodiesterase 6 [... 30 0.76
gi|6912242 adaptor protein, phosphotyrosine interaction, PH doma... 28 2.9
gi|23097240 leucine-rich repeats and WD repeat domain containing... 28 3.8
gi|4885349 G protein-coupled receptor kinase 5 [Homo sapiens] 27 6.4
gi|23943920 cytosolic phospholipase A2, group IVA [Homo sapiens] 27 8.4
gi|187608446 phosphatidylinositol glycan anchor biosynthesis, cl... 27 8.4
gi|187608438 phosphatidylinositol glycan anchor biosynthesis, cl... 27 8.4
gi|108773804 Fraser syndrome 1 [Homo sapiens] 27 8.4
>gi|239743493 PREDICTED: hypothetical protein XP_002342862 [Homo
sapiens]
Length = 169
Score = 344 bits (882), Expect = 2e-95
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MRKGTGLFICKVGPLTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVSAVGNRAAS 60
MRKGTGLFICKVGPLTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVSAVGNRAAS
Sbjct: 1 MRKGTGLFICKVGPLTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVSAVGNRAAS 60
Query: 61 FHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPD 120
FHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPD
Sbjct: 61 FHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPD 120
Query: 121 NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG
Sbjct: 121 NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
>gi|239743501 PREDICTED: similar to hCG2042391 [Homo sapiens]
Length = 169
Score = 337 bits (865), Expect = 2e-93
Identities = 166/169 (98%), Positives = 166/169 (98%)
Query: 1 MRKGTGLFICKVGPLTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVSAVGNRAAS 60
MRKGTGLFICKVGP TWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVS VGNRAAS
Sbjct: 1 MRKGTGLFICKVGPPTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVSTVGNRAAS 60
Query: 61 FHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPD 120
FHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENID VMNWFTKEDFDFVTLCYREPD
Sbjct: 61 FHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDIVMNWFTKEDFDFVTLCYREPD 120
Query: 121 NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG
Sbjct: 121 NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
>gi|169209673 PREDICTED: similar to hCG2042391 [Homo sapiens]
Length = 129
Score = 213 bits (543), Expect = 5e-56
Identities = 102/115 (88%), Positives = 108/115 (93%)
Query: 55 GNRAASFHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTL 114
GN+AAS HYSRGGAKY+GEAVK SLV+SYTHP+SNETE +ENIDTVMNWFTKEDFDFVTL
Sbjct: 15 GNKAASSHYSRGGAKYDGEAVKRSLVESYTHPNSNETEWRENIDTVMNWFTKEDFDFVTL 74
Query: 115 CYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
CYREPDNVGHRFGPEAE RKLMIQQIDRTIGYLVGATEKHSLQSTS SS HE +G
Sbjct: 75 CYREPDNVGHRFGPEAENRKLMIQQIDRTIGYLVGATEKHSLQSTSVSSSHEAMG 129
>gi|169210658 PREDICTED: similar to hCG2042391 [Homo sapiens]
Length = 129
Score = 213 bits (543), Expect = 5e-56
Identities = 102/115 (88%), Positives = 108/115 (93%)
Query: 55 GNRAASFHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTL 114
GN+AAS HYSRGGAKY+GEAVK SLV+SYTHP+SNETE +ENIDTVMNWFTKEDFDFVTL
Sbjct: 15 GNKAASSHYSRGGAKYDGEAVKRSLVESYTHPNSNETEWRENIDTVMNWFTKEDFDFVTL 74
Query: 115 CYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
CYREPDNVGHRFGPEAE RKLMIQQIDRTIGYLVGATEKHSLQSTS SS HE +G
Sbjct: 75 CYREPDNVGHRFGPEAENRKLMIQQIDRTIGYLVGATEKHSLQSTSVSSSHEAMG 129
>gi|169210188 PREDICTED: similar to hCG2042391 [Homo sapiens]
Length = 129
Score = 213 bits (543), Expect = 5e-56
Identities = 102/115 (88%), Positives = 108/115 (93%)
Query: 55 GNRAASFHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTL 114
GN+AAS HYSRGGAKY+GEAVK SLV+SYTHP+SNETE +ENIDTVMNWFTKEDFDFVTL
Sbjct: 15 GNKAASSHYSRGGAKYDGEAVKRSLVESYTHPNSNETEWRENIDTVMNWFTKEDFDFVTL 74
Query: 115 CYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
CYREPDNVGHRFGPEAE RKLMIQQIDRTIGYLVGATEKHSLQSTS SS HE +G
Sbjct: 75 CYREPDNVGHRFGPEAENRKLMIQQIDRTIGYLVGATEKHSLQSTSVSSSHEAMG 129
>gi|239750115 PREDICTED: similar to hCG2042391 [Homo sapiens]
Length = 149
Score = 207 bits (528), Expect = 3e-54
Identities = 100/114 (87%), Positives = 106/114 (92%)
Query: 56 NRAASFHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLC 115
N+AAS HYSRGGAKYEGEAVK LV+SYTHP+SNETER+ENIDTVMNWFTKEDFD VTLC
Sbjct: 36 NKAASSHYSRGGAKYEGEAVKRCLVESYTHPNSNETERRENIDTVMNWFTKEDFDIVTLC 95
Query: 116 YREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQSTSASSLHETVG 169
YREPDNV HRF PEAE RKLMIQQ+DRTIGYLVGATEKHSLQSTSASS HET+G
Sbjct: 96 YREPDNVRHRFRPEAENRKLMIQQLDRTIGYLVGATEKHSLQSTSASSSHETMG 149
>gi|239755573 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 (putative function)
[Homo sapiens]
Length = 661
Score = 180 bits (457), Expect = 5e-46
Identities = 88/111 (79%), Positives = 98/111 (88%)
Query: 48 LMIVSAVGNRAASFHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKE 107
+ ++ G +AAS HYSRGGAKYEGEAVK SLV+SYTH +SNETE++ENIDTVMN FTKE
Sbjct: 218 IFLLYVKGKKAASSHYSRGGAKYEGEAVKRSLVESYTHQNSNETEQRENIDTVMNCFTKE 277
Query: 108 DFDFVTLCYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQS 158
DFDFVTL YR+PDNVGHRF PEAE RKLMIQQ+DRTI YLVGATEKHSLQS
Sbjct: 278 DFDFVTLYYRQPDNVGHRFKPEAENRKLMIQQLDRTIWYLVGATEKHSLQS 328
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 148 bits (374), Expect = 2e-36
Identities = 68/78 (87%), Positives = 74/78 (94%)
Query: 71 EGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDNVGHRFGPEA 130
EGEAVK SLV+SYTHP+SNETER+ENIDT+MNWFTKEDFDFVTLCYREPDNVGHRFGPEA
Sbjct: 20 EGEAVKRSLVESYTHPNSNETERRENIDTIMNWFTKEDFDFVTLCYREPDNVGHRFGPEA 79
Query: 131 EKRKLMIQQIDRTIGYLV 148
E RKLMIQQI RTIG ++
Sbjct: 80 ENRKLMIQQIGRTIGVII 97
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 148 bits (374), Expect = 2e-36
Identities = 68/78 (87%), Positives = 74/78 (94%)
Query: 71 EGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDNVGHRFGPEA 130
EGEAVK SLV+SYTHP+SNETER+ENIDT+MNWFTKEDFDFVTLCYREPDNVGHRFGPEA
Sbjct: 20 EGEAVKRSLVESYTHPNSNETERRENIDTIMNWFTKEDFDFVTLCYREPDNVGHRFGPEA 79
Query: 131 EKRKLMIQQIDRTIGYLV 148
E RKLMIQQI RTIG ++
Sbjct: 80 ENRKLMIQQIGRTIGVII 97
>gi|45545421 ectonucleotide pyrophosphatase/phosphodiesterase 7
[Homo sapiens]
Length = 458
Score = 107 bits (268), Expect = 4e-24
Identities = 50/93 (53%), Positives = 64/93 (68%)
Query: 55 GNRAASFHYSRGGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTL 114
G RA SF Y G Y+G AV S + H NETE + NIDTVM WFT+ED D VTL
Sbjct: 134 GLRAGSFFYPGGNVTYQGVAVTRSRKEGIAHNYKNETEWRANIDTVMAWFTEEDLDLVTL 193
Query: 115 CYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYL 147
+ EPD+ GHR+GPE+ +R+ M++Q+DRT+GYL
Sbjct: 194 YFGEPDSTGHRYGPESPERREMVRQVDRTVGYL 226
>gi|11034849 ectonucleotide pyrophosphatase/phosphodiesterase 5
(putative function) [Homo sapiens]
Length = 477
Score = 50.4 bits (119), Expect = 7e-07
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 63 YSRGGAKYEGEAVK-WSLVDSYTHPSSNETERKENIDTVMNWFT-KEDFDFVTLCYREPD 120
++ G A + G VK ++ P + ++ + ++ WFT KE + L + +PD
Sbjct: 132 HTSGAAMWPGTDVKIHKRFPTHYMPYNESVSFEDRVAKIIEWFTSKEPINLGLLYWEDPD 191
Query: 121 NVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSLQST 159
++GH GP++ +I ID+ +GYL+ +K L +T
Sbjct: 192 DMGHHLGPDSPLMGPVISDIDKKLGYLIQMLKKAKLWNT 230
>gi|7662358 ectonucleotide pyrophosphatase/phosphodiesterase 4
(putative function) [Homo sapiens]
Length = 453
Score = 40.4 bits (93), Expect = 7e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 80 VDSYTHPSSNETERKENIDTVMNWFTKED--FDFVTLCYREPDNVGHRFGPE-AEKRKLM 136
+ SY ++ +E ++ + W + F TL + EPD GH++GPE E +
Sbjct: 147 ISSYFMNYNSSVSFEERLNNITMWLNNSNPPVTFATLYWEEPDASGHKYGPEDKENMSRV 206
Query: 137 IQQIDRTIGYLV 148
+++ID IG LV
Sbjct: 207 LKKIDDLIGDLV 218
>gi|219842244 periphilin 1 isoform 6 [Homo sapiens]
Length = 434
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 15 LTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIV 51
+TW LKK TQ AE+ L T+ TPEN+ LA L +V
Sbjct: 384 ITWGMLKKTTQEAERILLRTQTPFTPENLFLAMLSVV 420
>gi|48255929 periphilin 1 isoform 1 [Homo sapiens]
Length = 458
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 15 LTWAQLKKLTQLAEKSLENTRVTQTPENMLLADLMIV 51
+TW LKK TQ AE+ L T+ TPEN+ LA L +V
Sbjct: 408 ITWGMLKKTTQEAERILLRTQTPFTPENLFLAMLSVV 444
>gi|111160296 ectonucleotide pyrophosphatase/phosphodiesterase 3
[Homo sapiens]
Length = 875
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 86 PSSNETERKENIDTVMNWFTKEDFD---FVTLCYREPDNVGHRFGPEAEKRKLMIQQIDR 142
P + +E I T++ W + F T+ + EPD+ GH GP + + +Q +D
Sbjct: 288 PYNGSVPFEERISTLLKWLDLPKAERPRFYTMYFEEPDSSGHAGGPVSARVIKALQVVDH 347
Query: 143 TIGYLVGATEKHSLQS 158
G L+ ++ +L +
Sbjct: 348 AFGMLMEGLKQRNLHN 363
>gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1
[Homo sapiens]
Length = 925
Score = 36.2 bits (82), Expect = 0.014
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 94 KENIDTVMNWFT---KEDFDFVTLCYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGA 150
+E I V+ W E F TL EPD+ GH +GP + + +Q++D +G L+
Sbjct: 347 EERILAVLQWLQLPKDERPHFYTLYLEEPDSSGHSYGPVSSEVIKALQRVDGMVGMLMDG 406
Query: 151 TEKHSL 156
++ +L
Sbjct: 407 LKELNL 412
>gi|195947389 autotaxin isoform 3 preproprotein [Homo sapiens]
Length = 888
Score = 33.1 bits (74), Expect = 0.12
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 94 KENIDTVMNWFTKEDFD--FVTLCYRE-PDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGA 150
+ I T++ W T D + V Y E PD GH++GP + +++ID+ +G L+
Sbjct: 283 ERRILTILQWLTLPDHERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKIVGQLMDG 342
Query: 151 TEKHSL 156
++ L
Sbjct: 343 LKQLKL 348
>gi|91823602 autotaxin isoform 2 preproprotein [Homo sapiens]
Length = 863
Score = 33.1 bits (74), Expect = 0.12
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 94 KENIDTVMNWFTKEDFD--FVTLCYRE-PDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGA 150
+ I T++ W T D + V Y E PD GH++GP + +++ID+ +G L+
Sbjct: 283 ERRILTILQWLTLPDHERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKIVGQLMDG 342
Query: 151 TEKHSL 156
++ L
Sbjct: 343 LKQLKL 348
>gi|170763513 ATP/GTP binding protein 1 [Homo sapiens]
Length = 1186
Score = 32.3 bits (72), Expect = 0.20
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 30 SLENTRVTQTPENMLLADLMIVSAVGNRAASFHYSRGGAK 69
+LENT+ QT N+L + +VSA G R SF ++GG++
Sbjct: 73 TLENTKDLQTTLNILSILVELVSAGGGRRVSFLVTKGGSQ 112
>gi|23503267 ectonucleotide pyrophosphatase/phosphodiesterase 6
[Homo sapiens]
Length = 440
Score = 30.4 bits (67), Expect = 0.76
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 97 IDTVMNWFTKEDFDFVTLCYREPDNVGHRFGPEAEKRKLMIQQIDRTIGYLVGATEKHSL 156
+ ++ F D + + D GH +GP + +RK ++ +D + Y+ ++ L
Sbjct: 170 VSDALDSFKSGRADLAAIYHERIDVEGHHYGPASPQRKDALKAVDTVLKYMTKWIQERGL 229
Query: 157 Q 157
Q
Sbjct: 230 Q 230
>gi|6912242 adaptor protein, phosphotyrosine interaction, PH domain
and leucine zipper containing 1 [Homo sapiens]
Length = 709
Score = 28.5 bits (62), Expect = 2.9
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 18 AQLKKLTQLAEKSLENTRVTQTPENMLLADLMIVSAVGNRAASFHYSRGGAKYEGEAVKW 77
A + +TQ E+ L+ E + L ++ +++ + AA YSR K E + VK+
Sbjct: 110 AMMFPITQFKERDLK--------EILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKY 161
Query: 78 SLVDSYTHPSSNETERKENIDTVMNWF 104
+ + T RK+ T+M++F
Sbjct: 162 EVTEDV------YTSRKKQHQTMMHYF 182
>gi|23097240 leucine-rich repeats and WD repeat domain containing
1 [Homo sapiens]
Length = 647
Score = 28.1 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 20 LKKLTQLAEKSLENTRVTQTPENMLLADLMIVSAVGNR 57
L +LTQL E L N + P+N+ L+ L ++ N+
Sbjct: 43 LCRLTQLQELDLSNNHLETLPDNLGLSHLRVLRCANNQ 80
>gi|4885349 G protein-coupled receptor kinase 5 [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 6.4
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 66 GGAKYEGEAVKWSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDN--VG 123
GG K +G++ KW + + H S E R+ T+ D D+ +LC ++P +
Sbjct: 19 GGGKRKGKSKKWKEILKFPHISQCEDLRR----TI-------DRDYCSLCDKQPIGRLLF 67
Query: 124 HRFGPEAEKRKLMIQQIDRTIGYLVGATEK 153
+F + IQ +D Y V EK
Sbjct: 68 RQFCETRPGLECYIQFLDSVAEYEVTPDEK 97
>gi|23943920 cytosolic phospholipase A2, group IVA [Homo sapiens]
Length = 749
Score = 26.9 bits (58), Expect = 8.4
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 77 WSLVDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDNVGHRFGPEAEKRKLM 136
W + Y+HP E +E + +M + +T P V R+ K+K
Sbjct: 232 WYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLT-----PQKV-KRYVESLWKKKSS 285
Query: 137 IQQIDRT--IGYLVGATEKHSLQSTSASSLHETV 168
Q + T G L+G T H+ +T+ SSL E V
Sbjct: 286 GQPVTFTDIFGMLIGETLIHNRMNTTLSSLKEKV 319
>gi|187608446 phosphatidylinositol glycan anchor biosynthesis, class
G isoform 1 [Homo sapiens]
Length = 983
Score = 26.9 bits (58), Expect = 8.4
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 80 VDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDNVGHRFGPEAEKRKLMIQQ 139
V YT +N T ++D V+ + D+D + L Y D++GH GP + + +
Sbjct: 185 VSDYTEVDNNVTR---HLDKVLK---RGDWDILILHYLGLDHIGHISGPNSPLIGQKLSE 238
Query: 140 IDRTI 144
+D +
Sbjct: 239 MDSVL 243
>gi|187608438 phosphatidylinositol glycan anchor biosynthesis, class
G isoform 2 [Homo sapiens]
Length = 975
Score = 26.9 bits (58), Expect = 8.4
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 80 VDSYTHPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDNVGHRFGPEAEKRKLMIQQ 139
V YT +N T ++D V+ + D+D + L Y D++GH GP + + +
Sbjct: 185 VSDYTEVDNNVTR---HLDKVLK---RGDWDILILHYLGLDHIGHISGPNSPLIGQKLSE 238
Query: 140 IDRTI 144
+D +
Sbjct: 239 MDSVL 243
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 26.9 bits (58), Expect = 8.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 85 HPSSNETERKENIDTVMNWFTKEDFDFVTLCYREPDNVGH 124
HP+ E +++ + + +FT+ED + + YR P H
Sbjct: 1509 HPNQGIIEHRDHPHSPIRYFTQEDINQGKVMYRPPPAAPH 1548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,063,173
Number of Sequences: 37866
Number of extensions: 229936
Number of successful extensions: 602
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 28
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.