Search of human proteins with 239742982

Search of human proteins with 239742982

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo
sapiens]
         (177 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo ...   357   3e-99
gi|239748962 PREDICTED: hypothetical protein XP_002346868 [Homo ...   291   3e-79
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s...   226   1e-59
gi|239754401 PREDICTED: similar to transducin (beta)-like 1 X-li...   209   1e-54
gi|19913367 transducin beta-like 1Y [Homo sapiens]                    187   3e-48
gi|19913365 transducin beta-like 1Y [Homo sapiens]                    187   3e-48
gi|15150805 transducin beta-like 1Y [Homo sapiens]                    187   3e-48
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]         187   4e-48
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]         187   4e-48
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]         187   4e-48
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]           187   4e-48
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]       38   0.005
gi|38327634 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapi...    34   0.058
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    33   0.099
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    33   0.099
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    33   0.099
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    33   0.099
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    33   0.099
gi|33356550 G patch domain containing 4 isoform 2 [Homo sapiens]       33   0.099
gi|33356552 G patch domain containing 4 isoform 1 [Homo sapiens]       33   0.099
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]            32   0.29 
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo...    32   0.38 
gi|21703346 spartin [Homo sapiens]                                     32   0.38 
gi|214830187 spartin [Homo sapiens]                                    32   0.38 
gi|214830109 spartin [Homo sapiens]                                    32   0.38 
gi|214830079 spartin [Homo sapiens]                                    32   0.38 
gi|124494254 ErbB3-binding protein 1 [Homo sapiens]                    32   0.38 
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi...    31   0.49 
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    31   0.49 
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    31   0.49 

>gi|239742982 PREDICTED: hypothetical protein XP_002342710 [Homo
           sapiens]
          Length = 177

 Score =  357 bits (916), Expect = 3e-99
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MSLCAQPIFLLDLAVVDWPWFKWDYSSTWASHSAFTFGIESRISQSNINGALVPPAALIS 60
           MSLCAQPIFLLDLAVVDWPWFKWDYSSTWASHSAFTFGIESRISQSNINGALVPPAALIS
Sbjct: 1   MSLCAQPIFLLDLAVVDWPWFKWDYSSTWASHSAFTFGIESRISQSNINGALVPPAALIS 60

Query: 61  IIQKGLQYVEAEVSINEDGTFFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAAT 120
           IIQKGLQYVEAEVSINEDGTFFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAAT
Sbjct: 61  IIQKGLQYVEAEVSINEDGTFFDGRPMSLSLIDALMPDVVQTRQQAYSDKLKQQQAAAAT 120

Query: 121 ANQQGSAKKKKKKKKKKNAENTANGEENGAHIIANNHTDTMEVDGDIEIPPNKAGQG 177
           ANQQGSAKKKKKKKKKKNAENTANGEENGAHIIANNHTDTMEVDGDIEIPPNKAGQG
Sbjct: 121 ANQQGSAKKKKKKKKKKNAENTANGEENGAHIIANNHTDTMEVDGDIEIPPNKAGQG 177


>gi|239748962 PREDICTED: hypothetical protein XP_002346868 [Homo
           sapiens]
          Length = 155

 Score =  291 bits (744), Expect = 3e-79
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 30  ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 89
           ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL
Sbjct: 8   ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 67

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENG 149
           SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENG
Sbjct: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENG 127

Query: 150 AHIIANNHTDTMEVDGDIEIPPNKAGQG 177
           AHIIANNHTDTMEVDGDIEIPPNKAGQG
Sbjct: 128 AHIIANNHTDTMEVDGDIEIPPNKAGQG 155


>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
           sapiens]
          Length = 514

 Score =  226 bits (575), Expect = 1e-59
 Identities = 123/150 (82%), Positives = 127/150 (84%), Gaps = 15/150 (10%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGT FDGRP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESL 81

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQ-----AAAATANQQGSAKKKKKKKKKKNAENTAN 144
           SLIDA+MPDVVQTRQQAY DKL QQQ     AAAA A+QQGSA         KN ENTAN
Sbjct: 82  SLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSA---------KNGENTAN 132

Query: 145 GEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
           GEENGAH IANNHTD MEVDGD+EIPPNKA
Sbjct: 133 GEENGAHTIANNHTDMMEVDGDVEIPPNKA 162


>gi|239754401 PREDICTED: similar to transducin (beta)-like 1
           X-linked receptor 1 [Homo sapiens]
          Length = 132

 Score =  209 bits (532), Expect = 1e-54
 Identities = 110/118 (93%), Positives = 113/118 (95%)

Query: 30  ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 89
           ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL
Sbjct: 8   ASHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPMSL 67

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEE 147
           SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKK  +++  G E
Sbjct: 68  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKCRKHSKWGGE 125


>gi|19913367 transducin beta-like 1Y [Homo sapiens]
          Length = 522

 Score =  187 bits (476), Expect = 3e-48
 Identities = 101/152 (66%), Positives = 116/152 (76%), Gaps = 9/152 (5%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK-------KKKKKKKNAENT 142
           SLI A++PDVVQ RQQA+ +KL QQQA+AA       AK          ++   KN E T
Sbjct: 82  SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAKAATMTPAAISQQNPPKNREAT 141

Query: 143 ANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            NGEENGAH I NNH+  ME+DGD+EIPPNKA
Sbjct: 142 VNGEENGAHEI-NNHSKPMEIDGDVEIPPNKA 172


>gi|19913365 transducin beta-like 1Y [Homo sapiens]
          Length = 522

 Score =  187 bits (476), Expect = 3e-48
 Identities = 101/152 (66%), Positives = 116/152 (76%), Gaps = 9/152 (5%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK-------KKKKKKKNAENT 142
           SLI A++PDVVQ RQQA+ +KL QQQA+AA       AK          ++   KN E T
Sbjct: 82  SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAKAATMTPAAISQQNPPKNREAT 141

Query: 143 ANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            NGEENGAH I NNH+  ME+DGD+EIPPNKA
Sbjct: 142 VNGEENGAHEI-NNHSKPMEIDGDVEIPPNKA 172


>gi|15150805 transducin beta-like 1Y [Homo sapiens]
          Length = 522

 Score =  187 bits (476), Expect = 3e-48
 Identities = 101/152 (66%), Positives = 116/152 (76%), Gaps = 9/152 (5%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPP+ALISI+QKGLQYVEAE+SIN+DGT FD RP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVEAEISINKDGTVFDSRPIESL 81

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK-------KKKKKKKNAENT 142
           SLI A++PDVVQ RQQA+ +KL QQQA+AA       AK          ++   KN E T
Sbjct: 82  SLIVAVIPDVVQMRQQAFGEKLTQQQASAAATEASAMAKAATMTPAAISQQNPPKNREAT 141

Query: 143 ANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            NGEENGAH I NNH+  ME+DGD+EIPPNKA
Sbjct: 142 VNGEENGAHEI-NNHSKPMEIDGDVEIPPNKA 172


>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
          Length = 526

 Score =  187 bits (475), Expect = 4e-48
 Identities = 102/154 (66%), Positives = 116/154 (75%), Gaps = 11/154 (7%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 81

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK---------KKKKKKKNAE 140
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A              +   KN E
Sbjct: 82  SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNRE 141

Query: 141 NTANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            T NGEEN AH + NNH   ME+DG++EIP +KA
Sbjct: 142 ATVNGEENRAHSV-NNHAKPMEIDGEVEIPSSKA 174


>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
          Length = 526

 Score =  187 bits (475), Expect = 4e-48
 Identities = 102/154 (66%), Positives = 116/154 (75%), Gaps = 11/154 (7%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 22  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 81

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK---------KKKKKKKNAE 140
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A              +   KN E
Sbjct: 82  SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNRE 141

Query: 141 NTANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            T NGEEN AH + NNH   ME+DG++EIP +KA
Sbjct: 142 ATVNGEENRAHSV-NNHAKPMEIDGEVEIPSSKA 174


>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
          Length = 577

 Score =  187 bits (475), Expect = 4e-48
 Identities = 102/154 (66%), Positives = 116/154 (75%), Gaps = 11/154 (7%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 73  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 132

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK---------KKKKKKKNAE 140
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A              +   KN E
Sbjct: 133 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNRE 192

Query: 141 NTANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            T NGEEN AH + NNH   ME+DG++EIP +KA
Sbjct: 193 ATVNGEENRAHSV-NNHAKPMEIDGEVEIPSSKA 225


>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
          Length = 577

 Score =  187 bits (475), Expect = 4e-48
 Identities = 102/154 (66%), Positives = 116/154 (75%), Gaps = 11/154 (7%)

Query: 31  SHSAFTFGIESRISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTFFDGRPM-SL 89
           SHSAFTFGIES ISQSNING LVPPAALISI+QKGLQYVEAE+SINEDGT FDGRP+ SL
Sbjct: 73  SHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESL 132

Query: 90  SLIDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKK---------KKKKKKKNAE 140
           SLIDA+MPDVVQTRQQA+ +KL QQQA+AA A    +A              +   KN E
Sbjct: 133 SLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNRE 192

Query: 141 NTANGEENGAHIIANNHTDTMEVDGDIEIPPNKA 174
            T NGEEN AH + NNH   ME+DG++EIP +KA
Sbjct: 193 ATVNGEENRAHSV-NNHAKPMEIDGEVEIPSSKA 225


>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
          Length = 822

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 17/125 (13%)

Query: 68  YVEAEVSINEDGTFFDGRPMSLSLIDALMPDVVQTRQQA-----------------YSDK 110
           Y EA V+I  D    +G  +  +L D +    ++ R                    +SDK
Sbjct: 274 YREALVTIKNDLKLIEGVDIKENLQDQIRHWFIECRNLTGTFPDYPDVEEGGSAIIFSDK 333

Query: 111 LKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHIIANNHTDTMEVDGDIEIP 170
             QQ      ANQ+   K KKKKKKK+     A  ++ G         +  ++   + +P
Sbjct: 334 TIQQVIEDIIANQEEEEKNKKKKKKKEKQPKKAKKQKKGTKEKNKEEDEKWKMSPSLFLP 393

Query: 171 PNKAG 175
             K G
Sbjct: 394 AMKEG 398



 Score = 28.1 bits (61), Expect = 4.2
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 92  IDALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTAN 144
           +D LM   ++  + A   + ++   A    +++G   KKK+KK KK+ + TA+
Sbjct: 440 VDELMRQELKNLKLAVDRERERPVKAGKKKDKKGKKGKKKEKKAKKDKDLTAD 492


>gi|38327634 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo
           sapiens]
          Length = 670

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 16/80 (20%)

Query: 102 TRQQAYSDKLKQQQAAAATANQQGSAKKKKKKK---------KKKNAENTANGEENGAHI 152
           T+    S  L   +AA  ++N +   KKKKK+K         KK   EN    EE  A  
Sbjct: 84  TKSPQKSTVLTNGEAAMQSSNSESKKKKKKKRKMVNDAEPDTKKAKTENKGKSEEESAE- 142

Query: 153 IANNHTDTMEVDGDIEIPPN 172
                  T E + ++E P N
Sbjct: 143 ------TTKETENNVEKPDN 156


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
            [Homo sapiens]
          Length = 1412

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 103  RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 142
            R++    K K+++A  A+     S  +KKKKKKKK AE T
Sbjct: 1372 RKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQT 1411


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
            [Homo sapiens]
          Length = 1451

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 103  RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 142
            R++    K K+++A  A+     S  +KKKKKKKK AE T
Sbjct: 1411 RKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQT 1450


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 103  RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 142
            R++    K K+++A  A+     S  +KKKKKKKK AE T
Sbjct: 1448 RKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQT 1487


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 103  RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 142
            R++    K K+++A  A+     S  +KKKKKKKK AE T
Sbjct: 1371 RKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQT 1410


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
            sapiens]
          Length = 1450

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 103  RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENT 142
            R++    K K+++A  A+     S  +KKKKKKKK AE T
Sbjct: 1410 RKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQT 1449


>gi|33356550 G patch domain containing 4 isoform 2 [Homo sapiens]
          Length = 370

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 100 VQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEE 147
           ++ ++QA+  +LK Q   A     +    KKKKKK+++  E  A   E
Sbjct: 174 LEAQEQAFLARLKGQDPGAPQLQSESKPPKKKKKKRRQKEEEEATASE 221


>gi|33356552 G patch domain containing 4 isoform 1 [Homo sapiens]
          Length = 375

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 100 VQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEE 147
           ++ ++QA+  +LK Q   A     +    KKKKKK+++  E  A   E
Sbjct: 179 LEAQEQAFLARLKGQDPGAPQLQSESKPPKKKKKKRRQKEEEEATASE 226


>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 248

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 102 TRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHI 152
           T ++   +K K+++       ++   KKKKKKKKKK  +   N +  G  I
Sbjct: 72  TTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCGLEI 122



 Score = 28.5 bits (62), Expect = 3.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 101 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAE 140
           +  ++   +K K+++       ++   KKKKKKKKK NA+
Sbjct: 77  EKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAK 116



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 101 QTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEE 147
           +  ++   +K K+++       ++   KKKKKKKKKK       G E
Sbjct: 75  EKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCGLE 121


>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
           sapiens]
          Length = 1483

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 98  DVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGE-ENG 149
           D ++TRQQ  ++  K++ A     N +  A+K+K+K+ +  A+N  NG+ ENG
Sbjct: 764 DHMETRQQMSAELWKERLAVLKEENDKKRAEKQKRKEME--AKNKENGKVENG 814


>gi|21703346 spartin [Homo sapiens]
          Length = 666

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 103 RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHII 153
           R +  SD+LK+          QG+   + K K+ K A++T++ E N +HI+
Sbjct: 353 RTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIV 403


>gi|214830187 spartin [Homo sapiens]
          Length = 666

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 103 RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHII 153
           R +  SD+LK+          QG+   + K K+ K A++T++ E N +HI+
Sbjct: 353 RTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIV 403


>gi|214830109 spartin [Homo sapiens]
          Length = 666

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 103 RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHII 153
           R +  SD+LK+          QG+   + K K+ K A++T++ E N +HI+
Sbjct: 353 RTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIV 403


>gi|214830079 spartin [Homo sapiens]
          Length = 666

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 103 RQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHII 153
           R +  SD+LK+          QG+   + K K+ K A++T++ E N +HI+
Sbjct: 353 RTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIV 403


>gi|124494254 ErbB3-binding protein 1 [Homo sapiens]
          Length = 394

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 97  PDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHIIANN 156
           PD+ ++  +    +LK        A  Q SA +K +KKKKK A  TA    +G  +  N 
Sbjct: 340 PDLYKSEMEVQDAELK--------ALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 391

Query: 157 HTD 159
             D
Sbjct: 392 AGD 394


>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo
           sapiens]
          Length = 1002

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 94  ALMPDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAHII 153
           A+  +  Q++  A   KL++ Q   +     G AKKKKK K   N E T +G  +     
Sbjct: 12  AMSEETRQSKLAAAKKKLREYQQRNSPGVPTG-AKKKKKIKNGSNPETTTSGGCHSPEDT 70

Query: 154 ANNHTDTMEVDGDIEIP 170
             ++  T++   D  +P
Sbjct: 71  PKDNAATLQPSDDTVLP 87


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 97   PDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAH 151
            P V  +R  + S    +  +++A++ +   +KKKKKKK+KK  +     +++  H
Sbjct: 1662 PSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKH 1716


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 97   PDVVQTRQQAYSDKLKQQQAAAATANQQGSAKKKKKKKKKKNAENTANGEENGAH 151
            P V  +R  + S    +  +++A++ +   +KKKKKKK+KK  +     +++  H
Sbjct: 1696 PSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKH 1750


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,528,017
Number of Sequences: 37866
Number of extensions: 250246
Number of successful extensions: 2836
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2086
Number of HSP's gapped (non-prelim): 486
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.