Guide to the Human Genome
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Search of human proteins with 239742728

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
         (93 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]            197   2e-51
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]            197   2e-51
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]            197   2e-51
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre...   102   9e-23
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre...   102   9e-23
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens]     92   7e-20
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ...    90   4e-19
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ...    90   4e-19
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]      90   4e-19
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h...    86   5e-18
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif...    84   2e-17
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ...    84   2e-17
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ...    84   2e-17
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif...    84   2e-17
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre...    40   3e-04
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec...    40   3e-04
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre...    29   0.71 
gi|118572606 hemicentin 1 [Homo sapiens]                               29   0.93 
gi|148536855 coatomer protein complex, subunit alpha isoform 1 [...    29   0.93 
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [...    29   0.93 
gi|11968023 zinc finger protein 106 homolog [Homo sapiens]             26   6.0  
gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo ...    26   7.9  
gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo ...    26   7.9  
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]     26   7.9  

>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score =  197 bits (501), Expect = 2e-51
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
          MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND
Sbjct: 1  MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60

Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE
Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score =  197 bits (501), Expect = 2e-51
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
          MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND
Sbjct: 1  MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60

Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE
Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score =  197 bits (501), Expect = 2e-51
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
          MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND
Sbjct: 1  MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60

Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE
Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
          precursor [Homo sapiens]
          Length = 71

 Score =  102 bits (253), Expect = 9e-23
 Identities = 48/49 (97%), Positives = 48/49 (97%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49


>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
          precursor [Homo sapiens]
          Length = 95

 Score =  102 bits (253), Expect = 9e-23
 Identities = 48/49 (97%), Positives = 48/49 (97%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1  MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49


>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
          sapiens]
          Length = 103

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 45/49 (91%), Positives = 47/49 (95%), Gaps = 1/49 (2%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          M++EKPKEGVKTEN DHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1  MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 48


>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
           homolog 2 [Homo sapiens]
          Length = 206

 Score = 89.7 bits (221), Expect = 4e-19
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 43  LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91
           L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 134 LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 182


>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
           sapiens]
          Length = 164

 Score = 89.7 bits (221), Expect = 4e-19
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 43  LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91
           L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 92  LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 140


>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
          Length = 95

 Score = 89.7 bits (221), Expect = 4e-19
 Identities = 43/49 (87%), Positives = 45/49 (91%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MA+EKP E VKTENN+HINLKVAGQDGSV QFKIKR TPLSKLMKAYCE
Sbjct: 1  MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE 49


>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
          homolog 2 [Homo sapiens]
          Length = 70

 Score = 86.3 bits (212), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%), Gaps = 1/49 (2%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MAD+KP+EGVKT+NN HINLKV GQ GSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1  MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE 48


>gi|239754793 PREDICTED: similar to Small ubiquitin-related
          modifier 2 [Homo sapiens]
          Length = 103

 Score = 84.3 bits (207), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MA++   EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49


>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
          sapiens]
          Length = 103

 Score = 84.3 bits (207), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MA++   EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49


>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
          sapiens]
          Length = 103

 Score = 84.3 bits (207), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MA++   EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49


>gi|239509111 PREDICTED: similar to Small ubiquitin-related
          modifier 2 [Homo sapiens]
          Length = 103

 Score = 84.3 bits (207), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)

Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          MA++   EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1  MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49


>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
          precursor [Homo sapiens]
          Length = 101

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          M+D++ K   +     +  ++I LKV GQD S   FK+K  T L KL ++YC+
Sbjct: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53


>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
          precursor [Homo sapiens]
          Length = 101

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          M+D++ K   +     +  ++I LKV GQD S   FK+K  T L KL ++YC+
Sbjct: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53


>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
          precursor [Homo sapiens]
          Length = 76

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 66 VAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
          ++ QD S   FK+K  T L KL ++YC+
Sbjct: 1  MSDQDSSEIHFKVKMTTHLKKLKESYCQ 28


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 31   LFCEAAAEETPVLTMADEKPKEGVKTENNDHINLKVAGQ 69
            L C+AA   +P+LT      K+GV  + ND+I ++  G+
Sbjct: 1661 LECKAAGNPSPILTWL----KDGVPVKANDNIRIEAGGK 1695


>gi|148536855 coatomer protein complex, subunit alpha isoform 1
           [Homo sapiens]
          Length = 1233

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)

Query: 47  DEKPKEGVKTENNDH-----------INLKVAGQDGSVAQFKIKRHTP 83
           D   + GV+T   DH           +NL  AG DG +  FK++R  P
Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERP 324


>gi|148536853 coatomer protein complex, subunit alpha isoform 2
           [Homo sapiens]
          Length = 1224

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)

Query: 47  DEKPKEGVKTENNDH-----------INLKVAGQDGSVAQFKIKRHTP 83
           D   + GV+T   DH           +NL  AG DG +  FK++R  P
Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERP 324


>gi|11968023 zinc finger protein 106 homolog [Homo sapiens]
          Length = 1883

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 52  EGVKTENNDHINLKVAGQDGSVAQFKIKRHTP 83
           E   T+  D    KV+G++GS A+ K +R TP
Sbjct: 320 ESQTTKQADTATSKVSGKNGSAAREKPRRWTP 351


>gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo
           sapiens]
          Length = 259

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 17  SWCCLCACLVRTWYLFCEAAAEETPVLTMADEKP 50
           +WC +C      W   C A A++  +   A   P
Sbjct: 102 AWCTICCTTFMMWLSTCRATAQQERLCQGASPPP 135


>gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo
           sapiens]
          Length = 259

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 17  SWCCLCACLVRTWYLFCEAAAEETPVLTMADEKP 50
           +WC +C      W   C A A++  +   A   P
Sbjct: 102 AWCTICCTTFMMWLSTCRATAQQERLCQGASPPP 135


>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
          Length = 951

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 29  WYLFCEAAAEETPVLTMA----DEKPKEGVKTENNDHINLKVAGQDGSV---AQFKIKRH 81
           +Y F + A +E     +A    DEK K GV ++N D  +     +DG+    + F  K+ 
Sbjct: 252 YYKFIQKAMKEGRYTVLAENKSDEKKKSGVSSDNEDDDD----EEDGNYLHPSLFASKKC 307

Query: 82  TPLSKLMK 89
             L +LMK
Sbjct: 308 NRLEELMK 315


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.129    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,408,662
Number of Sequences: 37866
Number of extensions: 122221
Number of successful extensions: 338
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 25
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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