Guide to the Human Genome
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Name: LOC100287777 Sequence: fasta or formatted (91aa) NCBI GI: 239742637
Description:

PREDICTED: hypothetical protein XP_002342585

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.2          2           1
 C cysteine            2.2          2           1
 D aspartate           8.8          8           1
 E glutamate          11.0         10           2
 F phenylalanine       2.2          2           1
 G glycine             6.6          6           1
 H histidine           3.3          3           1
 I isoleucine          1.1          1           1
 K lysine              5.5          5           1
 L leucine             8.8          8           2
 M methionine          4.4          4           1
 N asparagine          4.4          4           1
 P proline             2.2          2           1
 Q glutamine           4.4          4           1
 R arginine            7.7          7           1
 S serine              5.5          5           1
 T threonine           4.4          4           1
 V valine              8.8          8           2
 W tryptophan          6.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342585 
LOC100293831          0.977   PREDICTED: similar to PRED15 
LOC100287683          0.954   PREDICTED: hypothetical protein XP_002342584 
LOC100287454          0.937   PREDICTED: hypothetical protein XP_002342565 
LOC100287339          0.937   PREDICTED: hypothetical protein XP_002342563 
LOC100287490          0.926   PREDICTED: hypothetical protein XP_002342566 
LOC100287185          0.926   PREDICTED: hypothetical protein XP_002342558 
LOC100287220          0.926   PREDICTED: hypothetical protein XP_002342559 
LOC100287248          0.926   PREDICTED: hypothetical protein XP_002342560 
LOC100287280          0.926   PREDICTED: hypothetical protein XP_002342561 
LOC100287154          0.926   PREDICTED: hypothetical protein XP_002342557 
LOC100286984          0.926   PREDICTED: hypothetical protein XP_002342553 
LOC100288096          0.914   PREDICTED: hypothetical protein XP_002342647 
LOC100293187          0.309   PREDICTED: similar to hCG1997218 
LOC100291294          0.309   PREDICTED: hypothetical protein XP_002346621 
LOC100289257          0.309   PREDICTED: hypothetical protein XP_002342415 
PDCD2L                0.017   programmed cell death 2-like 
TUBB3                 0.017   tubulin, beta, 4 
RNF157                0.017   ring finger protein 157 
CLSPN                 0.011   claspin 
STK4                  0.011   serine/threonine kinase 4 
MPHOSPH10             0.011   M-phase phosphoprotein 10 
PRG3                  0.006   proteoglycan 3 
EIF3A                 0.006   eukaryotic translation initiation factor 3, subunit 1...
EMILIN2               0.006   elastin microfibril interfacer 2 
TUBB6                 0.006   tubulin, beta 6 
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
UTRN                  0.006   utrophin 
TUBB2C                0.006   tubulin, beta, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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