Guide to the Human Genome
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Name: PRG3 Sequence: fasta or formatted (225aa) NCBI GI: 223633965
Description:

proteoglycan 3

Referenced in:

Neutrophils, Eosinophils, and Basophils

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         16           2
 C cysteine            6.2         14           2
 D aspartate           6.2         14           1
 E glutamate           8.0         18           2
 F phenylalanine       4.9         11           1
 G glycine             7.1         16           2
 H histidine           1.8          4           1
 I isoleucine          2.7          6           1
 K lysine              3.6          8           1
 L leucine            10.2         23           4
 M methionine          0.9          2           1
 N asparagine          4.4         10           1
 P proline             4.0          9           1
 Q glutamine           7.1         16           1
 R arginine            4.9         11           2
 S serine              6.2         14           2
 T threonine           4.0          9           1
 V valine              5.3         12           1
 W tryptophan          3.1          7           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteoglycan 3 
PRG2                  0.417   proteoglycan 2 preproprotein 
MRC2                  0.076   mannose receptor, C type 2 
REG1B                 0.061   regenerating islet-derived 1 beta precursor 
MRC1                  0.059   mannose receptor C type 1 precursor 
FCER2                 0.059   Fc fragment of IgE, low affinity II, receptor for (C...
MRC1L1                0.059   mannose receptor, C type 1-like 1 
LY75                  0.057   lymphocyte antigen 75 
NCAN                  0.048   chondroitin sulfate proteoglycan 3 
REG1A                 0.044   regenerating islet-derived 1 alpha precursor 
VCAN                  0.044   versican isoform 2 
VCAN                  0.044   versican isoform 1 
ACAN                  0.039   aggrecan isoform 2 precursor 
ACAN                  0.039   aggrecan isoform 1 precursor 
BCAN                  0.039   brevican isoform 1 
COLEC11               0.037   collectin sub-family member 11 isoform b 
COLEC11               0.037   collectin sub-family member 11 isoform a 
REG3A                 0.037   pancreatitis-associated protein precursor 
REG3A                 0.037   pancreatitis-associated protein precursor 
REG3A                 0.037   pancreatitis-associated protein precursor 
SFTPD                 0.033   pulmonary surfactant-associated protein D precursor ...
REG3G                 0.033   regenerating islet-derived 3 gamma 
REG3G                 0.033   regenerating islet-derived 3 gamma 
PLA2R1                0.031   phospholipase A2 receptor 1 isoform 2 precursor [Hom...
PLA2R1                0.031   phospholipase A2 receptor 1 isoform 1 precursor [Hom...
CLEC3B                0.028   C-type lectin domain family 3, member B 
ASGR1                 0.028   asialoglycoprotein receptor 1 
CLEC18C               0.026   mannose receptor-like 
CLEC4G                0.026   C-type lectin domain family 4, member G 
COLEC10               0.026   collectin sub-family member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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