Guide to the Human Genome
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Name: LOC100287154 Sequence: fasta or formatted (91aa) NCBI GI: 239742562
Description:

PREDICTED: hypothetical protein XP_002342557

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          3           1
 C cysteine            2.2          2           1
 D aspartate           6.6          6           1
 E glutamate          11.0         10           2
 F phenylalanine       2.2          2           1
 G glycine             6.6          6           1
 H histidine           2.2          2           1
 I isoleucine          1.1          1           1
 K lysine              6.6          6           1
 L leucine             8.8          8           2
 M methionine          4.4          4           1
 N asparagine          5.5          5           1
 P proline             2.2          2           1
 Q glutamine           4.4          4           1
 R arginine            6.6          6           1
 S serine              6.6          6           1
 T threonine           4.4          4           1
 V valine              8.8          8           2
 W tryptophan          6.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342557 
LOC100287490          1.000   PREDICTED: hypothetical protein XP_002342566 
LOC100287185          1.000   PREDICTED: hypothetical protein XP_002342558 
LOC100287220          1.000   PREDICTED: hypothetical protein XP_002342559 
LOC100287248          1.000   PREDICTED: hypothetical protein XP_002342560 
LOC100287280          1.000   PREDICTED: hypothetical protein XP_002342561 
LOC100286984          1.000   PREDICTED: hypothetical protein XP_002342553 
LOC100287454          0.994   PREDICTED: hypothetical protein XP_002342565 
LOC100287339          0.994   PREDICTED: hypothetical protein XP_002342563 
LOC100288096          0.971   PREDICTED: hypothetical protein XP_002342647 
LOC100293831          0.948   PREDICTED: similar to PRED15 
LOC100287683          0.942   PREDICTED: hypothetical protein XP_002342584 
LOC100287777          0.942   PREDICTED: hypothetical protein XP_002342585 
LOC100293187          0.320   PREDICTED: similar to hCG1997218 
LOC100291294          0.320   PREDICTED: hypothetical protein XP_002346621 
LOC100289257          0.320   PREDICTED: hypothetical protein XP_002342415 
KIF6                  0.029   kinesin family member 6 
EMILIN2               0.017   elastin microfibril interfacer 2 
MPHOSPH10             0.012   M-phase phosphoprotein 10 
PROZ                  0.006   protein Z, vitamin K-dependent plasma glycoprotein [H...
SERPINB5              0.006   serine (or cysteine) proteinase inhibitor, clade B ...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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