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Search of human proteins with 239742146
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo
sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753728 PREDICTED: similar to hCG1997218 [Homo sapiens] 352 7e-98
gi|239748245 PREDICTED: hypothetical protein XP_002346621 [Homo ... 352 7e-98
gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo ... 352 7e-98
gi|239754381 PREDICTED: similar to FLJ44955 protein [Homo sapiens] 150 5e-37
gi|239748982 PREDICTED: hypothetical protein XP_002346844 [Homo ... 150 5e-37
gi|239743002 PREDICTED: hypothetical protein XP_002342694 [Homo ... 150 5e-37
gi|239742590 PREDICTED: hypothetical protein XP_002342565 [Homo ... 82 2e-16
gi|239742582 PREDICTED: hypothetical protein XP_002342563 [Homo ... 82 2e-16
gi|239754136 PREDICTED: similar to PRED15 [Homo sapiens] 81 4e-16
gi|239742907 PREDICTED: hypothetical protein XP_002342647 [Homo ... 80 9e-16
gi|239742588 PREDICTED: hypothetical protein XP_002342566 [Homo ... 80 1e-15
gi|239742578 PREDICTED: hypothetical protein XP_002342558 [Homo ... 80 1e-15
gi|239742576 PREDICTED: hypothetical protein XP_002342559 [Homo ... 80 1e-15
gi|239742574 PREDICTED: hypothetical protein XP_002342560 [Homo ... 80 1e-15
gi|239742572 PREDICTED: hypothetical protein XP_002342561 [Homo ... 80 1e-15
gi|239742562 PREDICTED: hypothetical protein XP_002342557 [Homo ... 80 1e-15
gi|239742558 PREDICTED: hypothetical protein XP_002342553 [Homo ... 80 1e-15
gi|239742637 PREDICTED: hypothetical protein XP_002342585 [Homo ... 79 2e-15
gi|239742633 PREDICTED: hypothetical protein XP_002342584 [Homo ... 78 3e-15
gi|110815809 zinc finger, RAN-binding domain containing 1 protei... 34 0.070
gi|46049110 myosin binding protein C, slow type isoform 4 [Homo ... 30 0.78
gi|46049119 myosin binding protein C, slow type isoform 3 [Homo ... 30 0.78
gi|46049125 myosin binding protein C, slow type isoform 2 [Homo ... 30 0.78
gi|45976288 myosin binding protein C, slow type isoform 1 [Homo ... 30 0.78
gi|122937345 myosin VB [Homo sapiens] 30 1.3
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens] 30 1.3
gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens] 29 1.7
gi|226423889 myocardin isoform 1 [Homo sapiens] 29 2.3
gi|23957692 myocardin isoform 2 [Homo sapiens] 29 2.3
gi|226423891 myocardin isoform 3 [Homo sapiens] 29 2.3
>gi|239753728 PREDICTED: similar to hCG1997218 [Homo sapiens]
Length = 171
Score = 352 bits (904), Expect = 7e-98
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP 60
MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP
Sbjct: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP 60
Query: 61 CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE 120
CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE
Sbjct: 61 CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE 120
Query: 121 KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA 171
KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA
Sbjct: 121 KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA 171
>gi|239748245 PREDICTED: hypothetical protein XP_002346621 [Homo
sapiens]
Length = 171
Score = 352 bits (904), Expect = 7e-98
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP 60
MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP
Sbjct: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP 60
Query: 61 CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE 120
CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE
Sbjct: 61 CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE 120
Query: 121 KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA 171
KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA
Sbjct: 121 KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA 171
>gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo
sapiens]
Length = 171
Score = 352 bits (904), Expect = 7e-98
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP 60
MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP
Sbjct: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCP 60
Query: 61 CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE 120
CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE
Sbjct: 61 CPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALE 120
Query: 121 KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA 171
KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA
Sbjct: 121 KKIPFSEEKLKPASEIYIMKSQMLICKTMGKMSPGHVRGLHGSPPITGLEA 171
>gi|239754381 PREDICTED: similar to FLJ44955 protein [Homo sapiens]
Length = 201
Score = 150 bits (379), Expect = 5e-37
Identities = 74/107 (69%), Positives = 87/107 (81%)
Query: 39 LVGNWSKGDSYVLAKRLAAFCPCPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKS 98
L+G +K YVLAKRL AFCPCP+DLWN E+ERDDL LVEE+SKQQSIQEVTW LLK+
Sbjct: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
Query: 99 FNFIREAVHKSLENLQPDNALEKKIPFSEEKLKPASEIYIMKSQMLI 145
F+FIREA HK LENLQPDN +EKKI FSEEK K A++I+I ++ I
Sbjct: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNI 133
>gi|239748982 PREDICTED: hypothetical protein XP_002346844 [Homo
sapiens]
Length = 201
Score = 150 bits (379), Expect = 5e-37
Identities = 74/107 (69%), Positives = 87/107 (81%)
Query: 39 LVGNWSKGDSYVLAKRLAAFCPCPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKS 98
L+G +K YVLAKRL AFCPCP+DLWN E+ERDDL LVEE+SKQQSIQEVTW LLK+
Sbjct: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
Query: 99 FNFIREAVHKSLENLQPDNALEKKIPFSEEKLKPASEIYIMKSQMLI 145
F+FIREA HK LENLQPDN +EKKI FSEEK K A++I+I ++ I
Sbjct: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNI 133
>gi|239743002 PREDICTED: hypothetical protein XP_002342694 [Homo
sapiens]
Length = 201
Score = 150 bits (379), Expect = 5e-37
Identities = 74/107 (69%), Positives = 87/107 (81%)
Query: 39 LVGNWSKGDSYVLAKRLAAFCPCPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKS 98
L+G +K YVLAKRL AFCPCP+DLWN E+ERDDL LVEE+SKQQSIQEVTW LLK+
Sbjct: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
Query: 99 FNFIREAVHKSLENLQPDNALEKKIPFSEEKLKPASEIYIMKSQMLI 145
F+FIREA HK LENLQPDN +EKKI FSEEK K A++I+I ++ I
Sbjct: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNI 133
>gi|239742590 PREDICTED: hypothetical protein XP_002342565 [Homo
sapiens]
Length = 91
Score = 82.0 bits (201), Expect = 2e-16
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+GDEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEGDEEFVGKWSK 70
>gi|239742582 PREDICTED: hypothetical protein XP_002342563 [Homo
sapiens]
Length = 91
Score = 82.0 bits (201), Expect = 2e-16
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+GDEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEGDEEFVGKWSK 70
>gi|239754136 PREDICTED: similar to PRED15 [Homo sapiens]
Length = 91
Score = 81.3 bits (199), Expect = 4e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN +DMDN++QAEVVSDGDEE VG WS+
Sbjct: 26 MWESLELPRDLLNGFDQNVHSDMDNKVQAEVVSDGDEEFVGKWSE 70
>gi|239742907 PREDICTED: hypothetical protein XP_002342647 [Homo
sapiens]
Length = 91
Score = 80.1 bits (196), Expect = 9e-16
Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DM+N++QAEVVS+GDEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMNNKVQAEVVSEGDEEFVGKWSK 70
>gi|239742588 PREDICTED: hypothetical protein XP_002342566 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742578 PREDICTED: hypothetical protein XP_002342558 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742576 PREDICTED: hypothetical protein XP_002342559 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742574 PREDICTED: hypothetical protein XP_002342560 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742572 PREDICTED: hypothetical protein XP_002342561 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742562 PREDICTED: hypothetical protein XP_002342557 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742558 PREDICTED: hypothetical protein XP_002342553 [Homo
sapiens]
Length = 91
Score = 79.7 bits (195), Expect = 1e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
>gi|239742637 PREDICTED: hypothetical protein XP_002342585 [Homo
sapiens]
Length = 91
Score = 78.6 bits (192), Expect = 2e-15
Identities = 35/45 (77%), Positives = 39/45 (86%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLN FDQN +DMDN++QAEVVSDGDEE VG WS+
Sbjct: 26 MWESLELPRDLLNDFDQNVHSDMDNKVQAEVVSDGDEEFVGKWSE 70
>gi|239742633 PREDICTED: hypothetical protein XP_002342584 [Homo
sapiens]
Length = 91
Score = 78.2 bits (191), Expect = 3e-15
Identities = 35/45 (77%), Positives = 39/45 (86%)
Query: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
MWESLE PRDLLNGFDQN +DMDN++QAEVVSD DEE VG WS+
Sbjct: 26 MWESLELPRDLLNGFDQNVHSDMDNKVQAEVVSDRDEEFVGKWSE 70
>gi|110815809 zinc finger, RAN-binding domain containing 1 protein
[Homo sapiens]
Length = 708
Score = 33.9 bits (76), Expect = 0.070
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 7 PPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCPCPRDLW 66
PP FD+ D D+ E++ +E + NWS + L RL A LW
Sbjct: 391 PPTVQEKLFDEVLDRDVQKELE-------EESPIINWSLELATRLDSRLYA-------LW 436
Query: 67 NSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLEN 112
N R +CL++ S+ + TW + + +R+A+H SL +
Sbjct: 437 N----RTAGDCLLD------SVLQATWGIYDKDSVLRKALHDSLHD 472
>gi|46049110 myosin binding protein C, slow type isoform 4 [Homo
sapiens]
Length = 1123
Score = 30.4 bits (67), Expect = 0.78
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 5 LEPPRDLLNGFDQNADNDMD----NEIQAEVVSDGDEELVGNWSKGDSYVL 51
++PP+ +L+G D ADN + N+++ E+ G+ WS+GD ++
Sbjct: 519 IDPPKIILDGLD--ADNTVTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIM 567
>gi|46049119 myosin binding protein C, slow type isoform 3 [Homo
sapiens]
Length = 1141
Score = 30.4 bits (67), Expect = 0.78
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 5 LEPPRDLLNGFDQNADNDMD----NEIQAEVVSDGDEELVGNWSKGDSYVL 51
++PP+ +L+G D ADN + N+++ E+ G+ WS+GD ++
Sbjct: 519 IDPPKIILDGLD--ADNTVTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIM 567
>gi|46049125 myosin binding protein C, slow type isoform 2 [Homo
sapiens]
Length = 1148
Score = 30.4 bits (67), Expect = 0.78
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 5 LEPPRDLLNGFDQNADNDMD----NEIQAEVVSDGDEELVGNWSKGDSYVL 51
++PP+ +L+G D ADN + N+++ E+ G+ WS+GD ++
Sbjct: 544 IDPPKIILDGLD--ADNTVTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIM 592
>gi|45976288 myosin binding protein C, slow type isoform 1 [Homo
sapiens]
Length = 1171
Score = 30.4 bits (67), Expect = 0.78
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 5 LEPPRDLLNGFDQNADNDMD----NEIQAEVVSDGDEELVGNWSKGDSYVL 51
++PP+ +L+G D ADN + N+++ E+ G+ WS+GD ++
Sbjct: 544 IDPPKIILDGLD--ADNTVTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIM 592
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 29.6 bits (65), Expect = 1.3
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 75 LECLVEEISKQQSIQEVTWALLKS------FNFIREAVHKSLENLQPDNALEKKIPFSEE 128
LE L EE+ KQQ Q LL S F +E + ENL +EK + +E
Sbjct: 1365 LEALKEEMDKQQ--QTFCQTLLLSPEAQVEFGVQQEISRLTNENLDLKELVEK-LEKNER 1421
Query: 129 KLKPASEIYIMKSQML 144
KLK +IY+ K+Q L
Sbjct: 1422 KLKKQLKIYMKKAQDL 1437
>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
Length = 1047
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 109 SLENLQPDNALEKKIPFSEEKLKPASEIYI--MKSQMLICKTMGKMSPGHVRGLHGS 163
SLENL+ EKK P P +++ +K +++ C T G GHV G + S
Sbjct: 690 SLENLE-----EKKFPGEASIPSPKPKLHARDLKKELITCPTPGCDGSGHVTGNYAS 741
>gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens]
Length = 645
Score = 29.3 bits (64), Expect = 1.7
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 7 PPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSKGDSYVLAKRLAAFCPCPRDLW 66
P +++ N Q A + E ++ E ++G S D+ + P P ++
Sbjct: 502 PEKEIRNEGSQPAYRTNQQDSDIEALARCLENVLGCTSL-DTKTITTMAEDMSPGP-PIF 559
Query: 67 NSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALEKKIPFS 126
NS M R ++ + E ++ T + +N+++ A H++ + LEK +P +
Sbjct: 560 NSVMARTKMKRMRESAMQKLG----TEVFEEVYNYLKRARHQNASEAEIRECLEKVVPQA 615
Query: 127 EEKLKPASEIYIMKSQMLICKTMGK 151
+ + ++ + Q+LI TMGK
Sbjct: 616 SDCFE-VDQLLYFEEQLLI--TMGK 637
>gi|226423889 myocardin isoform 1 [Homo sapiens]
Length = 986
Score = 28.9 bits (63), Expect = 2.3
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 62 PRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALEK 121
P +L + E+D + LVE KQ+ I E+TW L + + E + L+ + +N EK
Sbjct: 507 PSELDGLDSEKDKM--LVE---KQKVINELTWKLQQEQRQVEE-LRMQLQKQKRNNCSEK 560
Query: 122 K-IPFSEEKLK 131
K +PF +K
Sbjct: 561 KPLPFLAASIK 571
>gi|23957692 myocardin isoform 2 [Homo sapiens]
Length = 938
Score = 28.9 bits (63), Expect = 2.3
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 62 PRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALEK 121
P +L + E+D + LVE KQ+ I E+TW L + + E + L+ + +N EK
Sbjct: 507 PSELDGLDSEKDKM--LVE---KQKVINELTWKLQQEQRQVEE-LRMQLQKQKRNNCSEK 560
Query: 122 K-IPFSEEKLK 131
K +PF +K
Sbjct: 561 KPLPFLAASIK 571
>gi|226423891 myocardin isoform 3 [Homo sapiens]
Length = 684
Score = 28.9 bits (63), Expect = 2.3
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 62 PRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKSFNFIREAVHKSLENLQPDNALEK 121
P +L + E+D + LVE KQ+ I E+TW L + + E + L+ + +N EK
Sbjct: 411 PSELDGLDSEKDKM--LVE---KQKVINELTWKLQQEQRQVEE-LRMQLQKQKRNNCSEK 464
Query: 122 K-IPFSEEKLK 131
K +PF +K
Sbjct: 465 KPLPFLAASIK 475
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,219,775
Number of Sequences: 37866
Number of extensions: 293817
Number of successful extensions: 764
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 46
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.