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Search of human proteins with 239742042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742042 PREDICTED: hypothetical protein XP_002342398 [Homo
sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753518 PREDICTED: hypothetical protein [Homo sapiens] 242 4e-65
gi|239748144 PREDICTED: hypothetical protein [Homo sapiens] 242 4e-65
gi|239742042 PREDICTED: hypothetical protein XP_002342398 [Homo ... 242 4e-65
gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo sap... 28 1.2
gi|19923559 EMSY protein [Homo sapiens] 28 1.2
gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens] 28 1.2
gi|150456469 EPH receptor A10 isoform 2 [Homo sapiens] 28 1.2
gi|38570099 glutamine-rich 1 [Homo sapiens] 27 2.7
gi|38570097 glutamine-rich 1 [Homo sapiens] 27 2.7
gi|239740689 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239513949 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 27 3.5
gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo ... 27 4.6
gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo ... 27 4.6
gi|239740794 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239740739 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239740654 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|4507835 uridine monophosphate synthase [Homo sapiens] 27 4.6
gi|93141033 PAX interacting protein 1 [Homo sapiens] 27 4.6
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 26 6.0
gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ... 26 6.0
gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ... 26 6.0
gi|151108435 BTB (POZ) domain containing 9 isoform b [Homo sapiens] 26 7.8
gi|151108413 BTB (POZ) domain containing 9 isoform a [Homo sapiens] 26 7.8
gi|151108411 BTB (POZ) domain containing 9 isoform a [Homo sapiens] 26 7.8
gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens] 26 7.8
>gi|239753518 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 242 bits (618), Expect = 4e-65
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE
Sbjct: 1 MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
Query: 61 QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG
Sbjct: 61 QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
>gi|239748144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 242 bits (618), Expect = 4e-65
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE
Sbjct: 1 MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
Query: 61 QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG
Sbjct: 61 QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
>gi|239742042 PREDICTED: hypothetical protein XP_002342398 [Homo
sapiens]
Length = 113
Score = 242 bits (618), Expect = 4e-65
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE
Sbjct: 1 MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
Query: 61 QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG
Sbjct: 61 QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
>gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo
sapiens]
Length = 304
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 62 PTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQ----RSHGPKGDGWVPQTWVSRG 113
P Q Q GQ L G PQ Q+ R+ R HG + G P +WV G
Sbjct: 194 PCQQQGGYLGQKLPGRLSEGVGPQLQEGGNRRSARPWRLHGAQYQGPAPGSWVEEG 249
>gi|19923559 EMSY protein [Homo sapiens]
Length = 1322
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 68 SLQGQHLLGWALSHSTPQQQQCQE 91
SL H++ +++STPQQQ+C+E
Sbjct: 1186 SLPSTHMVVAGMANSTPQQQKCRE 1209
>gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens]
Length = 1008
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 50 LCWAALLVHWEQPTQHQVSL----QGQHLLGWALSHSTPQQQQC----QERKQRSHG--- 98
LC A LL W T +V L Q LGW S ++ +R R++
Sbjct: 19 LCLALLLGPWRPGTAEEVILLDSKASQAELGWTALPSNGWEEISGVDEHDRPIRTYQVCN 78
Query: 99 ---PKGDGWVPQTWVSRG 113
P D W+ W+SRG
Sbjct: 79 VLEPNQDNWLQTGWISRG 96
>gi|150456469 EPH receptor A10 isoform 2 [Homo sapiens]
Length = 295
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 50 LCWAALLVHWEQPTQHQVSL----QGQHLLGWALSHSTPQQQQC----QERKQRSHG--- 98
LC A LL W T +V L Q LGW S ++ +R R++
Sbjct: 19 LCLALLLGPWRPGTAEEVILLDSKASQAELGWTALPSNGWEEISGVDEHDRPIRTYQVCN 78
Query: 99 ---PKGDGWVPQTWVSRG 113
P D W+ W+SRG
Sbjct: 79 VLEPNQDNWLQTGWISRG 96
>gi|38570099 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 7 TVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWEQPTQHQ 66
T ++ Q QQV+V V Q + L + + + T EQP Q Q
Sbjct: 88 TQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPT-----------EQPIQVQ 136
Query: 67 VSLQGQHLLGWALSHSTPQQQ 87
V +QGQ A S TP Q
Sbjct: 137 VQIQGQAPQSAAPSIQTPSLQ 157
>gi|38570097 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 7 TVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWEQPTQHQ 66
T ++ Q QQV+V V Q + L + + + T EQP Q Q
Sbjct: 88 TQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPT-----------EQPIQVQ 136
Query: 67 VSLQGQHLLGWALSHSTPQQQ 87
V +QGQ A S TP Q
Sbjct: 137 VQIQGQAPQSAAPSIQTPSLQ 157
>gi|239740689 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|239513949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 66 QVSLQGQHLLGWALSHSTPQQQQCQERKQRS 96
Q++ QGQ L+G L + QQQQ Q ++Q S
Sbjct: 3839 QLAQQGQGLMGHRLVTAQQQQQQQQHQQQGS 3869
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 39 DATVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHG 98
D+ +L +R L + + + Q Q Q QHLLG ++ QQQ + ++ G
Sbjct: 3712 DSRLLQERQLQLQQQRMQLAQKLQQQQQQQQQQQHLLG-QVAIQQQQQQGPGVQTNQALG 3770
Query: 99 PKGDGWVP 106
PK G +P
Sbjct: 3771 PKPQGLMP 3778
>gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo
sapiens]
Length = 102
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo
sapiens]
Length = 102
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|239740794 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|239740739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 60 EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
E+P H L+G A+ +QQQ QER+Q+ +G+ P+
Sbjct: 54 EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96
>gi|4507835 uridine monophosphate synthase [Homo sapiens]
Length = 480
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 8 VEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDR 46
+EDV T + V TV+ +Q K GL+ DA VL+DR
Sbjct: 122 IEDVVTSGSS---VLETVEVLQ--KEGLKVTDAIVLLDR 155
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 57 VHWEQPTQHQVSLQGQHL--LGWALSHSTPQQQQCQERKQRSHGP 99
+H +Q Q S HL AL H P QQ Q+++Q+ P
Sbjct: 540 MHQQQQQQQMQSQTAPHLSQTSQALQHQVPPQQPPQQQQQQQPPP 584
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 54 ALLVHWEQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQR 95
AL + Q QHQ LQ Q L HS QQQQ Q+ +Q+
Sbjct: 496 ALQQQFHQLQQHQ--LQQQQLAQLQQQHSLLQQQQQQQIQQQ 535
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 12 CTQAHARQQV-------RVTVDAVQCKKHGLQALDATVLIDRTTVLCWAA 54
C Q H R V R+T C+K Q +D L R T++ W +
Sbjct: 254 CGQCHCRITVCRFGDNNRMTYFCPHCQKENPQHVDICKLPTRNTIISWTS 303
>gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
[Homo sapiens]
Length = 406
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 47 TTVLCWAALLVHWEQPTQHQV-----SLQGQHLLGWA 78
T VLC A + W +PT+ Q+ +LQG+ ++G A
Sbjct: 32 TDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 68
>gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Homo sapiens]
Length = 455
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 47 TTVLCWAALLVHWEQPTQHQV-----SLQGQHLLGWA 78
T VLC A + W +PT+ Q+ +LQG+ ++G A
Sbjct: 32 TDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 68
>gi|151108435 BTB (POZ) domain containing 9 isoform b [Homo sapiens]
Length = 544
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 41 TVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSH----STPQQQQCQERKQRS 96
T++ DRT V C + V +E+ + + G H + H P+QQ Q+ +
Sbjct: 442 TMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSE 501
Query: 97 HGPKGD 102
GD
Sbjct: 502 ESGTGD 507
>gi|151108413 BTB (POZ) domain containing 9 isoform a [Homo sapiens]
Length = 612
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 41 TVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSH----STPQQQQCQERKQRS 96
T++ DRT V C + V +E+ + + G H + H P+QQ Q+ +
Sbjct: 510 TMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSE 569
Query: 97 HGPKGD 102
GD
Sbjct: 570 ESGTGD 575
>gi|151108411 BTB (POZ) domain containing 9 isoform a [Homo sapiens]
Length = 612
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 41 TVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSH----STPQQQQCQERKQRS 96
T++ DRT V C + V +E+ + + G H + H P+QQ Q+ +
Sbjct: 510 TMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSE 569
Query: 97 HGPKGD 102
GD
Sbjct: 570 ESGTGD 575
>gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens]
Length = 251
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 52 WAALLVHWEQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKG 101
W A + H QP ++QV G H + ++C+E+ + + +G
Sbjct: 25 WPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEKFGKPNKRRG 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.130 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,901,140
Number of Sequences: 37866
Number of extensions: 197645
Number of successful extensions: 542
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 30
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.