Search of human proteins with 239741979

Search of human proteins with 239741979

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
         (164 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ...   338   2e-93
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ...   271   2e-73
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre...   125   1e-29
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre...   119   9e-28
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens]    109   9e-25
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h...   108   2e-24
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]     102   1e-22
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif...   102   2e-22
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ...   102   2e-22
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ...   102   2e-22
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif...   102   2e-22
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]             90   1e-18
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]             90   1e-18
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]             90   1e-18
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre...    47   1e-05
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec...    47   1e-05
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre...    37   0.010
gi|148536855 coatomer protein complex, subunit alpha isoform 1 [...    33   0.14 
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [...    33   0.14 
gi|111118990 alpha-1A-adrenergic receptor isoform 4 [Homo sapiens]     32   0.25 
gi|111118992 alpha-1A-adrenergic receptor isoform 1 [Homo sapiens]     32   0.25 
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]     32   0.25 
gi|111118988 alpha-1A-adrenergic receptor isoform 3 [Homo sapiens]     32   0.25 
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    31   0.42 
gi|48255959 plasma membrane calcium ATPase 4 isoform 4a [Homo sa...    30   0.94 
gi|48255957 plasma membrane calcium ATPase 4 isoform 4b [Homo sa...    30   0.94 
gi|148612879 polyhomeotic like 3 [Homo sapiens]                        30   0.94 
gi|222352122 hypothetical protein LOC284297 [Homo sapiens]             29   1.6  
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]                28   2.7  
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo...    28   3.6  

>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
           sapiens]
          Length = 164

 Score =  338 bits (866), Expect = 2e-93
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MSSVHTNPSRECPGPTLHNPVPTAVSLNITYGQKHPNHIAHPSVTFTCSISTVYTALCKE 60
           MSSVHTNPSRECPGPTLHNPVPTAVSLNITYGQKHPNHIAHPSVTFTCSISTVYTALCKE
Sbjct: 1   MSSVHTNPSRECPGPTLHNPVPTAVSLNITYGQKHPNHIAHPSVTFTCSISTVYTALCKE 60

Query: 61  SGIAFVASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQEG 120
           SGIAFVASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQEG
Sbjct: 61  SGIAFVASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQEG 120

Query: 121 SVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTDMFQQQSGGVY 164
           SVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTDMFQQQSGGVY
Sbjct: 121 SVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTDMFQQQSGGVY 164


>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
           homolog 2 [Homo sapiens]
          Length = 206

 Score =  271 bits (692), Expect = 2e-73
 Identities = 139/166 (83%), Positives = 142/166 (85%), Gaps = 6/166 (3%)

Query: 5   HTNPSRECPGPT------LHNPVPTAVSLNITYGQKHPNHIAHPSVTFTCSISTVYTALC 58
           HT+PS    GP       L       +  N    +KHPNHIAHPSVTFTCSISTVYTALC
Sbjct: 41  HTSPSILTKGPLGSHFLWLRKASVMLLPENCKREKKHPNHIAHPSVTFTCSISTVYTALC 100

Query: 59  KESGIAFVASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQ 118
           KESGIAFVASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQ
Sbjct: 101 KESGIAFVASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQ 160

Query: 119 EGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTDMFQQQSGGVY 164
           EGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTDMFQQQSGGVY
Sbjct: 161 EGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTDMFQQQSGGVY 206


>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
           precursor [Homo sapiens]
          Length = 71

 Score =  125 bits (315), Expect = 1e-29
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
           +ADEKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY   QLEMEDEDT 
Sbjct: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60

Query: 154 DMFQQQSGGVY 164
           D+FQQQ+GGVY
Sbjct: 61  DVFQQQTGGVY 71


>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
           precursor [Homo sapiens]
          Length = 95

 Score =  119 bits (299), Expect = 9e-28
 Identities = 62/95 (65%), Positives = 69/95 (72%), Gaps = 24/95 (25%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 140
           +ADEKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY             
Sbjct: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60

Query: 141 -----------TPAQLEMEDEDTTDMFQQQSGGVY 164
                      TPAQLEMEDEDT D+FQQQ+GGVY
Sbjct: 61  RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95


>gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens]
          Length = 103

 Score =  109 bits (273), Expect = 9e-25
 Identities = 59/94 (62%), Positives = 68/94 (72%), Gaps = 25/94 (26%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 140
           +++EKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY             
Sbjct: 1   MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59

Query: 141 -----------TPAQLEMEDEDTTDMFQQQSGGV 163
                      TPAQLEMEDEDT D+FQQQ+GGV
Sbjct: 60  RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93


>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
           homolog 2 [Homo sapiens]
          Length = 70

 Score =  108 bits (271), Expect = 2e-24
 Identities = 53/71 (74%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
           +AD+KP+EG++T+N +HINLKV GQ GSVVQF+IKRHTPLSKLMKAY   QLEME+EDT 
Sbjct: 1   MADKKPQEGVKTKN-NHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59

Query: 154 DMFQQQSGGVY 164
           D+FQQQ GGVY
Sbjct: 60  DVFQQQMGGVY 70


>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
          Length = 95

 Score =  102 bits (255), Expect = 1e-22
 Identities = 55/95 (57%), Positives = 64/95 (67%), Gaps = 24/95 (25%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 140
           +A+EKP E ++TEN +HINLKVAGQ+GSVVQF+IKR TPLSKLMKAY             
Sbjct: 1   MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60

Query: 141 -----------TPAQLEMEDEDTTDMFQQQSGGVY 164
                       PAQLEMEDEDT D+FQQ +GGVY
Sbjct: 61  RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95


>gi|239754793 PREDICTED: similar to Small ubiquitin-related modifier
           2 [Homo sapiens]
          Length = 103

 Score =  102 bits (253), Expect = 2e-22
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
           +A++   EG++TEN DHINLKV GQ+ SVVQF+IKRHTPLSKLM AY  AQLEMEDE T 
Sbjct: 1   MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 154 DMFQQQSG 161
           D+FQQQ+G
Sbjct: 61  DVFQQQTG 68


>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
           sapiens]
          Length = 103

 Score =  102 bits (253), Expect = 2e-22
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
           +A++   EG++TEN DHINLKV GQ+ SVVQF+IKRHTPLSKLM AY  AQLEMEDE T 
Sbjct: 1   MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 154 DMFQQQSG 161
           D+FQQQ+G
Sbjct: 61  DVFQQQTG 68


>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
           sapiens]
          Length = 103

 Score =  102 bits (253), Expect = 2e-22
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
           +A++   EG++TEN DHINLKV GQ+ SVVQF+IKRHTPLSKLM AY  AQLEMEDE T 
Sbjct: 1   MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 154 DMFQQQSG 161
           D+FQQQ+G
Sbjct: 61  DVFQQQTG 68


>gi|239509111 PREDICTED: similar to Small ubiquitin-related modifier
           2 [Homo sapiens]
          Length = 103

 Score =  102 bits (253), Expect = 2e-22
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 94  VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
           +A++   EG++TEN DHINLKV GQ+ SVVQF+IKRHTPLSKLM AY  AQLEMEDE T 
Sbjct: 1   MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60

Query: 154 DMFQQQSG 161
           D+FQQQ+G
Sbjct: 61  DVFQQQTG 68


>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 92  LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 140
           L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 43  LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91


>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 92  LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 140
           L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 43  LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91


>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 92  LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 140
           L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 43  LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91


>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
           precursor [Homo sapiens]
          Length = 101

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 28/97 (28%)

Query: 94  VADEKPKEGIET----ENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY--------- 140
           ++D++ K   E     +  ++I LKV GQ+ S + F++K  T L KL ++Y         
Sbjct: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 141 ---------------TPAQLEMEDEDTTDMFQQQSGG 162
                          TP +L ME+ED  +++Q+Q+GG
Sbjct: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97


>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
           precursor [Homo sapiens]
          Length = 101

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 28/97 (28%)

Query: 94  VADEKPKEGIET----ENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY--------- 140
           ++D++ K   E     +  ++I LKV GQ+ S + F++K  T L KL ++Y         
Sbjct: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 141 ---------------TPAQLEMEDEDTTDMFQQQSGG 162
                          TP +L ME+ED  +++Q+Q+GG
Sbjct: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97


>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
           precursor [Homo sapiens]
          Length = 76

 Score = 36.6 bits (83), Expect = 0.010
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 24/72 (33%)

Query: 115 VAGQEGSVVQFRIKRHTPLSKLMKAY------------------------TPAQLEMEDE 150
           ++ Q+ S + F++K  T L KL ++Y                        TP +L ME+E
Sbjct: 1   MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE 60

Query: 151 DTTDMFQQQSGG 162
           D  +++Q+Q+GG
Sbjct: 61  DVIEVYQEQTGG 72


>gi|148536855 coatomer protein complex, subunit alpha isoform 1
           [Homo sapiens]
          Length = 1233

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 81  KLCRKTTKHKALAVADEKPKEGIETENKDH-----------INLKVAGQEGSVVQFRIKR 129
           +L    ++ K++ V D   + G++T  +DH           +NL  AG +G ++ F+++R
Sbjct: 262 ELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLER 321

Query: 130 HTP 132
             P
Sbjct: 322 ERP 324


>gi|148536853 coatomer protein complex, subunit alpha isoform 2
           [Homo sapiens]
          Length = 1224

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 81  KLCRKTTKHKALAVADEKPKEGIETENKDH-----------INLKVAGQEGSVVQFRIKR 129
           +L    ++ K++ V D   + G++T  +DH           +NL  AG +G ++ F+++R
Sbjct: 262 ELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLER 321

Query: 130 HTP 132
             P
Sbjct: 322 ERP 324


>gi|111118990 alpha-1A-adrenergic receptor isoform 4 [Homo sapiens]
          Length = 455

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 75  LTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQE 119
           L +QC  LCRK +   AL      P + +E ++KD + + V  +E
Sbjct: 341 LRIQC--LCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRE 383


>gi|111118992 alpha-1A-adrenergic receptor isoform 1 [Homo sapiens]
          Length = 466

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 75  LTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQE 119
           L +QC  LCRK +   AL      P + +E ++KD + + V  +E
Sbjct: 341 LRIQC--LCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRE 383


>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
          Length = 475

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 75  LTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQE 119
           L +QC  LCRK +   AL      P + +E ++KD + + V  +E
Sbjct: 341 LRIQC--LCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRE 383


>gi|111118988 alpha-1A-adrenergic receptor isoform 3 [Homo sapiens]
          Length = 429

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 75  LTVQCSKLCRKTTKHKALAVADEKPKEGIETENKDHINLKVAGQE 119
           L +QC  LCRK +   AL      P + +E ++KD + + V  +E
Sbjct: 341 LRIQC--LCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRE 383


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 31.2 bits (69), Expect = 0.42
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 34   KHPNHIAHPSVTFTCSISTVYTALCKESGIAFVASAKPPPALTVQCSKL 82
            KH   +AHP   F   +   Y+  C  + + F    +PPP     C  L
Sbjct: 1378 KHFPPLAHPPTVFDAGLQKAYSPTCSPT-LGFKEELRPPPTKLAACEPL 1425


>gi|48255959 plasma membrane calcium ATPase 4 isoform 4a [Homo
           sapiens]
          Length = 1170

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 85  KTTKHKALAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKR 129
           KT    AL +     +EGI+ E KD   +KV  +E SV+Q ++ R
Sbjct: 314 KTQDGVALEIQPLNSQEGIDNEEKDKKAVKVPKKEKSVLQGKLTR 358


>gi|48255957 plasma membrane calcium ATPase 4 isoform 4b [Homo
           sapiens]
          Length = 1205

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 85  KTTKHKALAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKR 129
           KT    AL +     +EGI+ E KD   +KV  +E SV+Q ++ R
Sbjct: 314 KTQDGVALEIQPLNSQEGIDNEEKDKKAVKVPKKEKSVLQGKLTR 358


>gi|148612879 polyhomeotic like 3 [Homo sapiens]
          Length = 995

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 9   SRECPGPTLHNPVPTAVSLNITYGQKHPNHIAHPSVTFT--CSISTVYTALCKESGIAFV 66
           S EC       P PT     IT G+       HP +      ++++V  ++ K       
Sbjct: 612 SDECVRMDRTPPPPTLSPAAITVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPSH 671

Query: 67  ASAKPPPALTVQCSKLCRKTTKHKALAVADEKPKEGI 103
            S  PPP L    +     T+ H ++   + KP + I
Sbjct: 672 VSVPPPPLLLPAATTRSNSTSMHSSIPSIENKPPQAI 708


>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
          Length = 1573

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 6    TNPSRECPGPTLHNPVPTAVSLNITYGQKHPNHIAHPSVTFTCSISTVYTALCKESGIAF 65
            T P    P P+   PV T VSL  + G +  +    P+V  +      +TA    +  + 
Sbjct: 1321 TTPHPTTPDPS-STPVITTVSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQ 1379

Query: 66   VASAKPPPALTVQCSKLCRKTTKHKALAVADEKP 99
            + + +P PAL    S+     T    L+  D KP
Sbjct: 1380 IPTLEPSPALESSPSR-SSTATSMDPLSTEDFKP 1412


>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
          Length = 642

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 19  NPVPTAVSLNITYGQKHPNHIAHPSVTFTCSISTVYTALCKESGIAFV 66
           NP P  +   + +G   P  + H  V   C I  V +A C E G  F+
Sbjct: 496 NPPPNPLRAALAFGTIAPG-VPHEGVAVFCRILCVMSAECGEQGTGFL 542


>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
           [Homo sapiens]
          Length = 666

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 95  ADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTTD 154
           +DE+ +   + E +DH +    G +      R+KR   ++   +A +  ++  ++  T D
Sbjct: 254 SDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMD 313

Query: 155 MF 156
           +F
Sbjct: 314 LF 315


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.127    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,325,823
Number of Sequences: 37866
Number of extensions: 316044
Number of successful extensions: 635
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 47
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.