Search of human proteins with 239740967

Search of human proteins with 239740967

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo
sapiens]
         (133 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo ...   283   4e-77
gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo ...   280   3e-76
gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo ...   268   7e-73
gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo ...    70   5e-13
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho...    62   2e-10
gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA he...    59   1e-09
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    59   1e-09
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    59   1e-09
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    57   6e-09
gi|241982802 HMG box domain containing 3 [Homo sapiens]                32   0.15 
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]       32   0.19 
gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alp...    30   0.43 
gi|105990532 apolipoprotein B precursor [Homo sapiens]                 29   1.3  
gi|31542246 kelch-like 36 [Homo sapiens]                               28   1.6  
gi|156616301 kelch-like 32 [Homo sapiens]                              28   1.6  
gi|223468705 5-hydroxytryptamine receptor 3 subunit D isoform 1 ...    28   2.2  
gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2 [...    28   2.2  
gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens]    28   2.8  
gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens]           27   3.7  
gi|4502187 aquaporin 7 [Homo sapiens]                                  27   3.7  
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]               27   4.8  
gi|13128990 hypothetical protein LOC79000 [Homo sapiens]               27   4.8  
gi|31543657 StAR-related lipid transfer (START) domain containin...    27   6.3  
gi|27764882 leprecan-like 1 isoform a [Homo sapiens]                   26   8.2  
gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens]           26   8.2  
gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens]           26   8.2  
gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens]           26   8.2  
gi|150378498 fragile site-associated protein [Homo sapiens]            26   8.2  
gi|122937456 T-box 18 [Homo sapiens]                                   26   8.2  
gi|46397377 chromosome 14 open reading frame 68 [Homo sapiens]         26   8.2  

>gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo
           sapiens]
          Length = 133

 Score =  283 bits (723), Expect = 4e-77
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
           MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP
Sbjct: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
           EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES
Sbjct: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120

Query: 121 VESRVLPGPRHRH 133
           VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133


>gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo
           sapiens]
          Length = 133

 Score =  280 bits (715), Expect = 3e-76
 Identities = 132/133 (99%), Positives = 132/133 (99%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
           MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP
Sbjct: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
           EITFLTAFCLPSFTRSRPLPDRQL HCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES
Sbjct: 61  EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120

Query: 121 VESRVLPGPRHRH 133
           VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133


>gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo
           sapiens]
          Length = 133

 Score =  268 bits (686), Expect = 7e-73
 Identities = 128/133 (96%), Positives = 129/133 (96%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
           MSESINFS NLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDH LVSVPSVAESLHHP
Sbjct: 1   MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
           EITFLTAFCLPSFTRSRPLPDRQLHHCLAL PSFALPAGDGVCHGP LQGSCYKGETQ+S
Sbjct: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS 120

Query: 121 VESRVLPGPRHRH 133
           VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133


>gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo
          sapiens]
          Length = 45

 Score = 70.1 bits (170), Expect = 5e-13
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 23 MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAES 56
          MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAE+
Sbjct: 1  MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEA 34


>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
           sapiens]
          Length = 906

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 37/76 (48%), Positives = 43/76 (56%), Gaps = 10/76 (13%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
           MSE INFS NLG      RCVVM GMPFP+IRS ELQ+  A LD TL   P  A    HP
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA----HP 828

Query: 61  EITFLTAFCLPSFTRS 76
               +   C+ +  +S
Sbjct: 829 GKALVENLCMKAVNQS 844


>gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA
           helicase DDX11-like protein [Homo sapiens]
          Length = 223

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVA 54
           MSE INFS NLG      RCVVM GMPFP+IRS ELQ+  A LD TL   P  A
Sbjct: 96  MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 143


>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 2 [Homo sapiens]
          Length = 856

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVA 54
           MSE INFS NLG      RCVVM GMPFP+IRS ELQ+  A LD TL   P  A
Sbjct: 729 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 776


>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 1 [Homo sapiens]
          Length = 906

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVA 54
           MSE INFS NLG      RCVVM GMPFP+IRS ELQ+  A LD TL   P  A
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 826


>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 3 [Homo sapiens]
          Length = 970

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 32/51 (62%), Positives = 34/51 (66%), Gaps = 6/51 (11%)

Query: 1   MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVP 51
           MSE INFS NLG      RCVVM GMPFP+IRS ELQ+  A LD TL   P
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRP 823


>gi|241982802 HMG box domain containing 3 [Homo sapiens]
          Length = 1292

 Score = 32.0 bits (71), Expect = 0.15
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 20   CVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPL 79
            C   P  P  S+  PEL        H  V +     S+ HP     T   + +  +  P 
Sbjct: 1128 CFSSPTEPPVSVSCPELLD-----QHYTVDMTETEHSIQHPVTKTATRRIVHAGLQPNPG 1182

Query: 80   PDRQLHHCLALCPSFA 95
                 HH LALCP  A
Sbjct: 1183 DPSAGHHSLALCPELA 1198


>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
          Length = 981

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKG 115
           E+T+  A  L +   +RP P  + H C A     A PA  G    P    +CY G
Sbjct: 686 ELTWALALALAAVAAARPRPPTE-HACWAKLMRLACPAPSGKSEVPERPNNCYAG 739


>gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
           isoform 1 [Homo sapiens]
          Length = 724

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 15  LSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEI 62
           +SPP     P  P P   +P   KT AD++   +++P +AE    P+I
Sbjct: 82  ISPPTPKPRPPRPLPV--APGSSKTEADVEQQALTLPDLAEQFAPPDI 127


>gi|105990532 apolipoprotein B precursor [Homo sapiens]
          Length = 4563

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 26   MPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFT 74
            +P   +R P +Q    DL +  + +PS   +   PE T L  F +PSFT
Sbjct: 2619 VPLTDLRIPSVQINFKDLKN--IKIPSRFST---PEFTILNTFHIPSFT 2662


>gi|31542246 kelch-like 36 [Homo sapiens]
          Length = 616

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 73  FTRSRPLPDRQLHHCLALCPSFALPAG 99
           + +  PLP R+ HHC+A+   F   AG
Sbjct: 325 WVKETPLPARRSHHCVAVLGGFIFIAG 351


>gi|156616301 kelch-like 32 [Homo sapiens]
          Length = 620

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 70  LPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPG 107
           + +++   P+P  + HHC+A+   F   AG  V H  G
Sbjct: 323 IANWSELAPMPVGRSHHCVAVMGDFLFVAGGEVEHASG 360


>gi|223468705 5-hydroxytryptamine receptor 3 subunit D isoform 1
           [Homo sapiens]
          Length = 404

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 16/78 (20%)

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVC---------HGPGLQGS 111
           E  F+T     + T+  PLP R LH  L  C       G G C          GPGL  +
Sbjct: 273 ETIFITHLLHVATTQPLPLP-RWLHSLLLHC------TGQGRCCPTAPQKGNKGPGLTPT 325

Query: 112 CYKGETQESVESRVLPGP 129
              G  +  V +  +PGP
Sbjct: 326 HLPGVKEPEVSAGQMPGP 343


>gi|47519877 5-hydroxytryptamine receptor 3 subunit D isoform 2
           [Homo sapiens]
          Length = 279

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 16/78 (20%)

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVC---------HGPGLQGS 111
           E  F+T     + T+  PLP R LH  L  C       G G C          GPGL  +
Sbjct: 148 ETIFITHLLHVATTQPLPLP-RWLHSLLLHC------TGQGRCCPTAPQKGNKGPGLTPT 200

Query: 112 CYKGETQESVESRVLPGP 129
              G  +  V +  +PGP
Sbjct: 201 HLPGVKEPEVSAGQMPGP 218


>gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens]
          Length = 471

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 61  EITFLTAFCLPSFTRSRPLPDRQLHHCLALC--PSFALP-AGDGVCHGPGLQGSCYKGET 117
           E  F+T     + T+  PLP R LH  L  C  P    P A      GPGL  +   G  
Sbjct: 340 ETIFITHLLHVATTQPPPLP-RWLHSLLLHCNSPGRCCPTAPQKENKGPGLTPTHLPGVK 398

Query: 118 QESVESRVLPGP 129
           +  V +  +PGP
Sbjct: 399 EPEVSAGQMPGP 410


>gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens]
          Length = 732

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 5   INFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVS-VPSVAESL 57
           IN +  LG    P  CVV  G PF S   P+L      LD + +  +P V   L
Sbjct: 614 INIASMLGSTDIPDWCVVEAGFPFSSDCLPDLSVWAEMLDKSPIRYIPQVKTPL 667


>gi|4502187 aquaporin 7 [Homo sapiens]
          Length = 342

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 11  LGQLLSPPRCVVMPGMPFPSIRSP-ELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFC 69
           LG  L     +V  G   P  R P +L+ + A  DH +  +P +    H P I+ LT   
Sbjct: 263 LGAYLGGIIYLVFIGSTIP--REPLKLEDSVAYEDHGITVLPKMGS--HEPTISPLTPVS 318

Query: 70  LPSFTRSRPLPDRQLHHCLAL 90
           +    RS   P   LH  +AL
Sbjct: 319 VSPANRSSVHPAPPLHESMAL 339


>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
          Length = 1910

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 27   PFPSIRSPELQKTTADLDHT----LVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDR 82
            P  S+ +  L K  + L        +S+P  + SL  PE T+++  C P  + S P   R
Sbjct: 1580 PSSSLEAEPLSKEESSLGEESFLPALSMPRASRSLSKPEPTYVSPPC-PRLSHSTPGKSR 1638

Query: 83   -QLHHCLALCPS 93
             Q + C A  P+
Sbjct: 1639 GQTYICQACTPT 1650


>gi|13128990 hypothetical protein LOC79000 [Homo sapiens]
          Length = 357

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 22  VMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHH 59
           ++PG+    + SP    TTAD+    +S  S+  S HH
Sbjct: 106 LIPGLAHDCMASPLATSTTADIQEAGLSPQSLQTSGHH 143


>gi|31543657 StAR-related lipid transfer (START) domain containing
          3 [Homo sapiens]
          Length = 445

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 37 QKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDRQLHHCL 88
          ++ T DL+ +L +V S+  SL H +   L++  LP   + R + D +   CL
Sbjct: 6  RELTRDLERSLPAVASLGSSLSHSQ--SLSSHLLPPPEKRRAISDVRRTFCL 55


>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
          Length = 708

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 70  LPSFTRSRPLPDRQLHHCLALCPSFALPAGDGV-CHGPGLQGSCYKGETQESVESRVLPG 128
           L S  R R +  R   HC A  P    P G+G     P  +    +     S E++ L G
Sbjct: 71  LRSHRRLREIRTRCARHCAARHPLPPPPPGEGPGAELPLFRSLLGRARCYRSCETQRLGG 130

Query: 129 PRHRH 133
           P  RH
Sbjct: 131 PASRH 135


>gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens]
          Length = 591

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 12  GQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLP 71
           G   +PPRC    G P P+  SP   +       TL+    +AE   H +I+  + +C  
Sbjct: 172 GGTTTPPRCPDSCGHPRPASSSPPGDRKGGQSQLTLL---DLAEDTIHCDIS--SCWCQG 226

Query: 72  SFTRSRPLP 80
           S     P P
Sbjct: 227 SVQDDAPFP 235


>gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens]
          Length = 591

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 12  GQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLP 71
           G   +PPRC    G P P+  SP   +       TL+    +AE   H +I+  + +C  
Sbjct: 172 GGTTTPPRCPDSCGHPRPASSSPPGDRKGGQSQLTLL---DLAEDTIHCDIS--SCWCQG 226

Query: 72  SFTRSRPLP 80
           S     P P
Sbjct: 227 SVQDDAPFP 235


>gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens]
          Length = 591

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 12  GQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLP 71
           G   +PPRC    G P P+  SP   +       TL+    +AE   H +I+  + +C  
Sbjct: 172 GGTTTPPRCPDSCGHPRPASSSPPGDRKGGQSQLTLL---DLAEDTIHCDIS--SCWCQG 226

Query: 72  SFTRSRPLP 80
           S     P P
Sbjct: 227 SVQDDAPFP 235


>gi|150378498 fragile site-associated protein [Homo sapiens]
          Length = 5005

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 22   VMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLP 80
            +M G   PS     LQ   +DL+ T+  +P V   LH+   T  T    P+ +R   LP
Sbjct: 3852 LMTGKKVPS----SLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTE--SPNASRGSSLP 3904


>gi|122937456 T-box 18 [Homo sapiens]
          Length = 607

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 16  SPPRCVVMPGMPFPSIRSPELQKTTADL 43
           SP R +  PG P PS ++P +    A+L
Sbjct: 121 SPARSLARPGTPLPSPQAPRVDLQGAEL 148


>gi|46397377 chromosome 14 open reading frame 68 [Homo sapiens]
          Length = 308

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)

Query: 12  GQLLSPPRCVVMPGMPFPSIRSP 34
           G L  PP C V P  P P  R P
Sbjct: 140 GPLAVPPMCPVPPACPEPKYRGP 162


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,632,932
Number of Sequences: 37866
Number of extensions: 336358
Number of successful extensions: 830
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 32
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.