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Search of human proteins with 239735607
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 272 5e-74
gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens] 205 8e-54
gi|19923987 nucleoredoxin-like 1 [Homo sapiens] 57 3e-09
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 51 3e-07
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 50 4e-07
gi|33149331 nucleoredoxin [Homo sapiens] 50 6e-07
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 48 3e-06
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 46 1e-05
gi|194363758 signal recognition particle 9kDa isoform 1 [Homo sa... 45 1e-05
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 45 1e-05
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 45 2e-05
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 44 3e-05
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 44 4e-05
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 44 5e-05
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 44 5e-05
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 42 2e-04
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 41 3e-04
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 41 3e-04
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 41 3e-04
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 41 3e-04
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 40 4e-04
gi|94680985 cyclin J-like [Homo sapiens] 40 6e-04
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 40 7e-04
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 40 7e-04
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 39 0.001
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 39 0.001
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 39 0.001
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 39 0.002
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 38 0.002
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 38 0.003
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR
Sbjct: 1 MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
Query: 61 RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRQRSLALLPRLECSGVILAHC 120
RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRQRSLALLPRLECSGVILAHC
Sbjct: 61 RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRQRSLALLPRLECSGVILAHC 120
Query: 121 NLCLLGSSDSLALAS 135
NLCLLGSSDSLALAS
Sbjct: 121 NLCLLGSSDSLALAS 135
>gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens]
Length = 156
Score = 205 bits (522), Expect = 8e-54
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR
Sbjct: 1 MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
Query: 61 RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYR 100
RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYR
Sbjct: 61 RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYR 100
>gi|19923987 nucleoredoxin-like 1 [Homo sapiens]
Length = 212
Score = 57.4 bits (137), Expect = 3e-09
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 19 EAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAE--ARRPAPFEVVFVSADGSS 76
E L+N++V L+F A C + F P+L DF+ L E R A +V+VS D +
Sbjct: 25 EVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVRLTDEFYVLRAAQLALVYVSQDSTE 84
Query: 77 QEMLDFMRELHGAWLALPFHDPYRQ 101
++ F++++ WL LPF D R+
Sbjct: 85 EQQDLFLKDMPKKWLFLPFEDDLRR 109
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 50.8 bits (120), Expect = 3e-07
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 99 YRQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
+ +++LAL P+LECSGV+LAHCNL LLGSS S A AS
Sbjct: 131 FLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 50.4 bits (119), Expect = 4e-07
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 100 RQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
+ +SLAL P+LECSG ILAH NL LLGSSDS A AS
Sbjct: 454 KDQSLALSPKLECSGTILAHSNLRLLGSSDSPASAS 489
>gi|33149331 nucleoredoxin [Homo sapiens]
Length = 435
Score = 50.1 bits (118), Expect = 6e-07
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 10 LVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEARRPAPFEVVF 69
L+ G ++E+ ++L+ V +YF+A C P R T +L + Y + + FE++F
Sbjct: 178 LLRNNGQSLES-SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQN---FEIIF 233
Query: 70 VSADGSSQEMLDFMRELHGAWLALPFHDPYRQRSL 104
VSAD S + + E+ WLA+P+ D R+ L
Sbjct: 234 VSADRSEESFKQYFSEM--PWLAVPYTDEARRSRL 266
Score = 47.4 bits (111), Expect = 4e-06
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 21/120 (17%)
Query: 3 DILGERHLVTCKGATVEAEA--ALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
++LGE+ LVT G V+ + A ++ LYF + AP + L FY L +A
Sbjct: 7 ELLGEK-LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAA 65
Query: 61 R-PAP---------------FEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRQRSL 104
P P E+VFVS+D ++ DF+R++ WLALP+ + +R+ L
Sbjct: 66 AGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDM--PWLALPYKEKHRKLKL 123
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 47.8 bits (112), Expect = 3e-06
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 101 QRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
+ SLAL PRLE +G+I AHCNLCL GSS+S A AS
Sbjct: 56 KESLALSPRLERNGMISAHCNLCLTGSSNSPASAS 90
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 45.8 bits (107), Expect = 1e-05
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 100 RQRSLALLPRLECSGVILAHCNLCLLGSSDS 130
+ +SLA+ PRLEC+G I AHC LCL SSDS
Sbjct: 69 KMKSLAVSPRLECTGAISAHCKLCLSDSSDS 99
>gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
sapiens]
Length = 82
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 91 LALPFHDPYRQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
L + D ++ LALL RL+CSG+I+AHC L LLGSS LA AS
Sbjct: 38 LCVKVTDDLVRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/33 (75%), Positives = 25/33 (75%)
Query: 103 SLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
SL L PRLE SGVI AHCNL LL SSDS A AS
Sbjct: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASAS 57
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 44.7 bits (104), Expect = 2e-05
Identities = 22/30 (73%), Positives = 23/30 (76%)
Query: 103 SLALLPRLECSGVILAHCNLCLLGSSDSLA 132
SL LLPR ECSG + AHCNL L GSSDS A
Sbjct: 108 SLTLLPRPECSGAVSAHCNLHLPGSSDSHA 137
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 44.3 bits (103), Expect = 3e-05
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 102 RSLALLPRLECSGVILAHCNLCLLGSSDSLALA 134
+ L L PRLE SG IL CNLCLLGSSD LA
Sbjct: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLA 172
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 43.9 bits (102), Expect = 4e-05
Identities = 24/40 (60%), Positives = 28/40 (70%)
Query: 96 HDPYRQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
H + + +LAL PRLECSG I AHCN L GSS+S A AS
Sbjct: 130 HAVWGRWNLALSPRLECSGKISAHCNPHLQGSSNSPAQAS 169
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 43.5 bits (101), Expect = 5e-05
Identities = 24/32 (75%), Positives = 24/32 (75%)
Query: 104 LALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
LAL PRLE SG I A CNL LLGSSDS A AS
Sbjct: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 43.5 bits (101), Expect = 5e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 101 QRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
++ L L PRLEC GVI+A+C+L LLGSSD AS
Sbjct: 397 RQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 42.0 bits (97), Expect = 2e-04
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
RLECSG+ILAHCNL L GS DS A AS
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASAS 457
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/39 (58%), Positives = 24/39 (61%)
Query: 97 DPYRQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
DP L PRLECSG I HCNL L GSS+S A AS
Sbjct: 787 DPTLTFRLLGSPRLECSGTISPHCNLLLPGSSNSPASAS 825
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 41.2 bits (95), Expect = 3e-04
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
+LECSG ILAHCNLCLLGS AS
Sbjct: 21 KLECSGPILAHCNLCLLGSRHPSTSAS 47
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 40.8 bits (94), Expect = 3e-04
Identities = 23/32 (71%), Positives = 23/32 (71%)
Query: 104 LALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
LA PRLE SG I A CNL LLGSSDS A AS
Sbjct: 8 LAPYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 40.8 bits (94), Expect = 3e-04
Identities = 23/32 (71%), Positives = 23/32 (71%)
Query: 104 LALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
LA PRLE SG I A CNL LLGSSDS A AS
Sbjct: 8 LAPYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 40.4 bits (93), Expect = 4e-04
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 107 LPRLECSGVILAHCNLCLLGSSDSLALAS 135
LPRLECSG I+A CNL LGSSD AS
Sbjct: 209 LPRLECSGAIMARCNLDHLGSSDPPTSAS 237
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 40.0 bits (92), Expect = 6e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 106 LLPRLECSGVILAHCNLCLLGSSDSLALA 134
L PRL+CSG+I AHCNL L GSS+S A A
Sbjct: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 39.7 bits (91), Expect = 7e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
RLE SG ILAHCN LLGS+DS A AS
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASAS 59
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 39.7 bits (91), Expect = 7e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
RLE SG ILAHCN LLGS+DS A AS
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASAS 59
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 39.3 bits (90), Expect = 0.001
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
RLECSG I AHC+L L GSSDS A AS
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASAS 34
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
RLEC+G I AHCNL L GSSDS A +S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
RLEC+G I AHCNL L GSSDS A +S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 38.5 bits (88), Expect = 0.002
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 101 QRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
++SLAL P L CS I AHCN L GSSD A AS
Sbjct: 1097 KQSLALSPGLGCSSAISAHCNFRLPGSSDFPASAS 1131
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 100 RQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
+++ L LLPRLECSG +C+L L SSD LAS
Sbjct: 171 KKQDLTLLPRLECSGTNTTYCSLDLPSSSDPPILAS 206
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 37.7 bits (86), Expect = 0.003
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 108 PRLECSGVILAHCNLCLLGSSDSLALAS 135
PRLECSG ++AHC+L LL SS+ AS
Sbjct: 442 PRLECSGTVIAHCSLKLLDSSNPPTSAS 469
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,910,449
Number of Sequences: 37866
Number of extensions: 184589
Number of successful extensions: 458
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 68
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.