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Search of human proteins with 239735600
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239735600 Tctex1 domain containing 1 [Homo sapiens] 361 e-100
gi|229090471 Tctex1 domain containing 2 [Homo sapiens] 75 2e-14
gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens] 62 3e-10
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 58 4e-09
gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [H... 56 1e-08
gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens] 44 1e-04
gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens] 39 0.003
gi|221316624 dystonin isoform 4 [Homo sapiens] 33 0.13
gi|221316622 dystonin isoform 3 [Homo sapiens] 33 0.13
gi|221316618 dystonin isoform 2 [Homo sapiens] 33 0.13
gi|34577047 dystonin isoform 1 [Homo sapiens] 33 0.13
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 33 0.13
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 33 0.13
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 33 0.13
gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-ty... 32 0.29
gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo ... 32 0.29
gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo ... 32 0.29
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens] 30 1.4
gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens] 29 2.5
gi|27363484 E74-like factor 1 (ets domain transcription factor) ... 28 4.2
gi|223941929 E74-like factor 1 (ets domain transcription factor)... 28 4.2
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 28 5.5
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 28 5.5
gi|7662408 zinc finger protein 30 homolog [Homo sapiens] 27 7.2
>gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
Length = 179
Score = 361 bits (926), Expect = e-100
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MMMSDNAKGRAAHSWKKRGSISSLSNHEFWRKEIHGRIKDSMSTVSYMEEPSQRDDISRL 60
MMMSDNAKGRAAHSWKKRGSISSLSNHEFWRKEIHGRIKDSMSTVSYMEEPSQRDDISRL
Sbjct: 1 MMMSDNAKGRAAHSWKKRGSISSLSNHEFWRKEIHGRIKDSMSTVSYMEEPSQRDDISRL 60
Query: 61 TVQMENTYQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKD 120
TVQMENTYQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKD
Sbjct: 61 TVQMENTYQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKD 120
Query: 121 LMIPRYKLIVIVHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVYLE 179
LMIPRYKLIVIVHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVYLE
Sbjct: 121 LMIPRYKLIVIVHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVYLE 179
>gi|229090471 Tctex1 domain containing 2 [Homo sapiens]
Length = 142
Score = 75.5 bits (184), Expect = 2e-14
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 65 ENTYQLGP--PKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLM 122
ENTY L P + F V + V+ L EY PE Q+TK +SE IK ++K++
Sbjct: 26 ENTYILRPVFQQRFRPSVVKDCIHAVLKEELANAEYSPEEMPQLTKHLSENIKDKLKEMG 85
Query: 123 IPRYKLIVIVHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVY 177
RYK++V V IG+ + + + SRC WD +D ++ VF N SLF + + +
Sbjct: 86 FDRYKMVVQVVIGEQRGEGVFMASRCFWDADTDNYTHDVFMNDSLFCVVAAFGCF 140
>gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]
Length = 198
Score = 61.6 bits (148), Expect = 3e-10
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 23 SLSNHEFWRKEIHGRIKDSMSTVSYMEEPSQRD--DISR------LTVQMENTYQLGPPK 74
S+ E + + + R+++S+ V Y+E P DI + ++ N+Y++ P K
Sbjct: 34 SMFEKEAYTQILRERLRESIHNVQYVEPPFDDSIADIGKEWKSALAKLKFANSYRMEPLK 93
Query: 75 HFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHI 134
F +V ++ ++T L+ +Y+ ++ ++ +++ I VK+ RYK I+ V
Sbjct: 94 KFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKFIIKVLF 153
Query: 135 GQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVYLE 179
Q Q+I I SR +WD D++ + S AL V+A+Y E
Sbjct: 154 IQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE 198
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 58.2 bits (139), Expect = 4e-09
Identities = 30/108 (27%), Positives = 55/108 (50%)
Query: 72 PPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVI 131
P + + L+ + + L Y + ++ + + E + ++++L PRYKL+
Sbjct: 114 PGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCS 173
Query: 132 VHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVYLE 179
V +G Q + + SR LWD D +S + N+SLFA+A V+ +Y E
Sbjct: 174 VVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE 221
>gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [Homo
sapiens]
Length = 127
Score = 56.2 bits (134), Expect = 1e-08
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 98 YEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHIGQLNRQSILIGSRCLWDPKSDTF 157
Y + ++ + + E + ++++L PRYKL+ V +G Q + + SR LWD D
Sbjct: 46 YSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGL 105
Query: 158 SSYVFRNSSLFALANVYAVYLE 179
+S + N+SLFA+A V+ +Y E
Sbjct: 106 ASVSYTNTSLFAVATVHGLYCE 127
>gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
Length = 113
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYK 127
YQ F V V++I+K+ + S + Y+ Q T + E +Q+ L P +K
Sbjct: 4 YQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP-FK 62
Query: 128 LIVIVHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
IV I Q N + S C WD +D + + N +++ + + + +
Sbjct: 63 YIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGL 111
>gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]
Length = 116
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 76 FPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHIG 135
F ++I+K+ V L E+Y Q T +I E + L YK IV +
Sbjct: 13 FNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLG-KAYKYIVTCAVV 71
Query: 136 QLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
Q + S C WD SD + + N ++ + NV+A+
Sbjct: 72 QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAI 112
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 1131 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 1189
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 1190 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 1227
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 1142 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 1200
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 1201 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 1238
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 1280 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 1338
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 1339 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 1376
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 1102 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 1160
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 1161 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 1198
>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
Length = 3062
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 776 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 834
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 835 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 872
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 776 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 834
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 835 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 872
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 20 SISSLSNHEFWRKEIHGRIKDSMSTVSYMEE------------PSQRDDISRLTVQMENT 67
S+ ++ E +KE+ R+KD + T++ E P+ R +++ + M
Sbjct: 776 SVFRITEQEKLKKELE-RLKDDLGTITNKCEEFFSQAAASSSVPTLRSELNVVLQNMNQV 834
Query: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQ 105
Y + + TVN +LK+ + V+ YE +LC +
Sbjct: 835 YSMSSTYIDKLKTVNLVLKNTQAAEALVKLYETKLCEE 872
>gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-type
1 [Homo sapiens]
Length = 116
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 78 VVTVNHILKDVVTSYLQV-----EEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIV 132
+V V++ +K+ + S + Y+ Q T + + + +Q+ L P +K IV
Sbjct: 13 IVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTL-SQLPKLGKP-FKYIVTC 70
Query: 133 HIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
I Q N + S C WD +D + + N +++ + + +
Sbjct: 71 VIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
>gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo
sapiens]
Length = 116
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 78 VVTVNHILKDVVTSYLQV-----EEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIV 132
+V V++ +K+ + S + Y+ Q T + + + +Q+ L P +K IV
Sbjct: 13 IVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTL-SQLPKLGKP-FKYIVTC 70
Query: 133 HIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
I Q N + S C WD +D + + N +++ + + +
Sbjct: 71 VIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
>gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo
sapiens]
Length = 116
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 78 VVTVNHILKDVVTSYLQV-----EEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIV 132
+V V++ +K+ + S + Y+ Q T + + + +Q+ L P +K IV
Sbjct: 13 IVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTL-SQLPKLGKP-FKYIVTC 70
Query: 133 HIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
I Q N + S C WD +D + + N +++ + + +
Sbjct: 71 VIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
Length = 3092
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 24/91 (26%)
Query: 56 DISRLT-VQMENTYQLGPP------------KHFPVVTVN--------HILKDVVTSYLQ 94
D S++T V +E +GPP +HF + ++N I +V YL+
Sbjct: 1993 DTSKITLVDIELIAAMGPPGGGRNPVTPRCIRHFNICSINSFSDETMVRIFSSIVAFYLR 2052
Query: 95 VEEYEPE---LCRQMTKTISEVIKAQVKDLM 122
E+ PE + Q+ E+ K V++L+
Sbjct: 2053 THEFPPEYFVIGNQIVNGTMEIYKQSVENLL 2083
>gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]
Length = 251
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 32 KEIHGRIKDSMSTVSYMEEPSQRDDISR-LTVQMENTYQLGPPKHFPVVTVNHILKDVVT 90
K H ++D ++S E D+S L+V +E+ G + V L+D++T
Sbjct: 161 KHDHHLVEDLSESLSVCLEDFMTSDLSESLSVSLEDFMTSGLSESLSVS-----LEDLMT 215
Query: 91 SYLQVEEYEPELC--RQMTKTISEVIKAQVKDLM 122
+ E YE LC + ++E I +QV L+
Sbjct: 216 PEMAKERYEDYLCWVKMARSRLNEPISSQVLGLL 249
>gi|27363484 E74-like factor 1 (ets domain transcription factor)
isoform a [Homo sapiens]
Length = 619
Score = 28.1 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 64 MENTYQLGPPKHFPVVTVNHIL-KDVVTSY 92
ME+ QLG P FP V V H+ D++ SY
Sbjct: 19 MEDERQLGDPAIFPAVIVEHVPGADILNSY 48
>gi|223941929 E74-like factor 1 (ets domain transcription factor)
isoform b [Homo sapiens]
Length = 595
Score = 28.1 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 64 MENTYQLGPPKHFPVVTVNHIL-KDVVTSY 92
ME+ QLG P FP V V H+ D++ SY
Sbjct: 19 MEDERQLGDPAIFPAVIVEHVPGADILNSY 48
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 56 DISRLTVQMENTYQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIK 115
D+ TV +E ++++ +N LKD+ Y +V+ + +L + K SE++
Sbjct: 1030 DLRDKTVLIEKSHEMERALSRKTDELNKQLKDLSQKYTEVKNVKEKLVEENAKQTSEILA 1089
Query: 116 AQ 117
Q
Sbjct: 1090 VQ 1091
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 56 DISRLTVQMENTYQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIK 115
D+ TV +E ++++ +N LKD+ Y +V+ + +L + K SE++
Sbjct: 1043 DLRDKTVLIEKSHEMERALSRKTDELNKQLKDLSQKYTEVKNVKEKLVEENAKQTSEILA 1102
Query: 116 AQ 117
Q
Sbjct: 1103 VQ 1104
>gi|7662408 zinc finger protein 30 homolog [Homo sapiens]
Length = 519
Score = 27.3 bits (59), Expect = 7.2
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 54 RDDISRLTVQMENTY---QLGPPKHFPVVTVNH--ILKDVVTSYLQVEEYEPELC-RQMT 107
RD+ R T+ +E+ Y +L K + ++ +++ + + L+ +E E+C RQ+T
Sbjct: 70 RDEKRRWTLDLESRYDTKKLFQGKDIYEMNLSQWKVMERIKSCGLEEQESPHEVCFRQVT 129
Query: 108 KTISEVIKAQVKDLMIPRYK 127
KT SE + K +P Y+
Sbjct: 130 KTTSEKMPTYRKLTSLPLYQ 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,395,409
Number of Sequences: 37866
Number of extensions: 245927
Number of successful extensions: 567
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 26
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.