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Search of human proteins with 239509009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509009 PREDICTED: hypothetical protein [Homo sapiens]
(74 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171448 PREDICTED: hypothetical protein [Homo sapiens] 175 8e-45
gi|169171883 PREDICTED: hypothetical protein [Homo sapiens] 175 8e-45
gi|169171116 PREDICTED: hypothetical protein [Homo sapiens] 175 8e-45
gi|239509009 PREDICTED: hypothetical protein [Homo sapiens] 175 8e-45
gi|32698954 hypothetical protein LOC283991 [Homo sapiens] 32 0.085
gi|239757595 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239757677 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|239752167 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|239746688 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|221219020 NYD-SP11 protein [Homo sapiens] 28 2.1
gi|126090909 engrailed homeobox 1 [Homo sapiens] 27 2.7
gi|183396797 keratin associated protein KRTAP2.1A [Homo sapiens] 26 6.1
gi|15082232 keratin associated protein 2-4 [Homo sapiens] 26 6.1
gi|225690576 keratin associated protein 2-2 [Homo sapiens] 26 6.1
gi|118402590 myosin XV [Homo sapiens] 26 6.1
gi|113427417 PREDICTED: similar to keratin associated protein 2-... 26 6.1
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 26 6.1
gi|167466270 PHD finger protein 13 [Homo sapiens] 26 6.1
gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens] 26 7.9
>gi|169171448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 74
Score = 175 bits (443), Expect = 8e-45
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR
Sbjct: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
Query: 61 LVIICCWVSSFTVC 74
LVIICCWVSSFTVC
Sbjct: 61 LVIICCWVSSFTVC 74
>gi|169171883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 74
Score = 175 bits (443), Expect = 8e-45
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR
Sbjct: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
Query: 61 LVIICCWVSSFTVC 74
LVIICCWVSSFTVC
Sbjct: 61 LVIICCWVSSFTVC 74
>gi|169171116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 74
Score = 175 bits (443), Expect = 8e-45
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR
Sbjct: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
Query: 61 LVIICCWVSSFTVC 74
LVIICCWVSSFTVC
Sbjct: 61 LVIICCWVSSFTVC 74
>gi|239509009 PREDICTED: hypothetical protein [Homo sapiens]
Length = 74
Score = 175 bits (443), Expect = 8e-45
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR
Sbjct: 1 MAWWECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFMWTRAR 60
Query: 61 LVIICCWVSSFTVC 74
LVIICCWVSSFTVC
Sbjct: 61 LVIICCWVSSFTVC 74
>gi|32698954 hypothetical protein LOC283991 [Homo sapiens]
Length = 164
Score = 32.3 bits (72), Expect = 0.085
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 17 SRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQG 52
S P SHQ P PP++P H H PQ ++ QG
Sbjct: 115 SSPPSHQAPWIPPSSPTTFHHLHRPQPTWPPGAQQG 150
>gi|239757595 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 4 WECPCCICMKPLLSRPHSHQNPACPPANPLQ-QC--HSHLPQRSYSAKRSQGPF 54
W+ PC + P+L P HQ A PP P + +C + LP R +S + S F
Sbjct: 114 WKPPCLLF--PILPGPSPHQPEAGPPILPAEPRCGPQAWLPSRLWSIRASDPSF 165
>gi|239757677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 21 SHQNPACPPANPLQQCHSHLPQRSYSAKRSQG---PFMWTRARLVIIC--CWVSS 70
SH+ P PP + +Q+ LP R+ S+ P T L + C CWVSS
Sbjct: 53 SHRPPPAPPPSSVQESPPQLPARNPSSGGHPPLPVPSRQTWGGLPVACASCWVSS 107
>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 20/60 (33%)
Query: 19 PHSHQNPAC---PPANPLQQC----HSHLPQ-------------RSYSAKRSQGPFMWTR 58
PH+HQ+P P A+P C HSH P R+ ++ S GP +W R
Sbjct: 115 PHTHQSPLAIPSPSASPPPSCAPAPHSHPPPIGLALACKSRRWPRAQPSRMSPGPPLWER 174
>gi|239752167 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 21 SHQNPACPPANPLQQCHSHLPQRSYSAKRSQG---PFMWTRARLVIIC--CWVSS 70
SH+ P PP + +Q+ LP R+ S+ P T L + C CWVSS
Sbjct: 53 SHRPPPAPPPSSVQESPPQLPARNPSSGGHPPLPVPSRQTWGGLPVACASCWVSS 107
>gi|239746688 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 21 SHQNPACPPANPLQQCHSHLPQRSYSAKRSQG---PFMWTRARLVIIC--CWVSS 70
SH+ P PP + +Q+ LP R+ S+ P T L + C CWVSS
Sbjct: 53 SHRPPPAPPPSSVQESPPQLPARNPSSGGHPPLPVPSRQTWGGLPVACASCWVSS 107
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 28 PPANPLQ-QCHSHLPQRSYSAKRSQGPFMW-TRARLV 62
P P+ QC+ H PQR RSQ F W +R R +
Sbjct: 796 PEGTPIYLQCNLHAPQRELEWDRSQEFFFWHSRVRAI 832
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 7 PCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGPFM 55
P C+ PL PH +P PP L +H PQ + R+ F+
Sbjct: 60 PAAPCLPPLAHHPHLPPHPPPPPPQHL-AAPAHQPQPAAQLHRTTNFFI 107
>gi|183396797 keratin associated protein KRTAP2.1A [Homo sapiens]
Length = 128
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 7 PCCICMKPLLSRPHSHQNPACPPANPLQQC 36
PCC C P RP + Q C P + +C
Sbjct: 22 PCC-CRDPCCCRPVTCQTTVCRPVTCVPRC 50
>gi|15082232 keratin associated protein 2-4 [Homo sapiens]
Length = 128
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 7 PCCICMKPLLSRPHSHQNPACPPANPLQQC 36
PCC C P RP + Q C P + +C
Sbjct: 22 PCC-CRDPCCCRPVTCQTTVCRPVTCVPRC 50
>gi|225690576 keratin associated protein 2-2 [Homo sapiens]
Length = 123
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 7 PCCICMKPLLSRPHSHQNPACPPANPLQQC 36
PCC C P RP + Q C P + +C
Sbjct: 22 PCC-CRDPCCCRPVTCQTTVCRPVTCVPRC 50
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 28 PPANPLQQCHSHLPQRSYSAKRSQGPFMWTR 58
PP+ PL CHS P+RS S+ P W R
Sbjct: 846 PPSPPLGLCHS--PRRSSLNLPSRLPHTWRR 874
>gi|113427417 PREDICTED: similar to keratin associated protein 2-4
[Homo sapiens]
Length = 128
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 7 PCCICMKPLLSRPHSHQNPACPPANPLQQC 36
PCC C P RP + Q C P + +C
Sbjct: 22 PCC-CRDPCCCRPVTCQTTVCRPVTCVPRC 50
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 11 CMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGP 53
C++ P PA PP P ++ +S +P R + A ++ P
Sbjct: 458 CIRIRARFPAPPAPPAPPPRGPKRKLYSAVPGRKFIAVKAHSP 500
>gi|167466270 PHD finger protein 13 [Homo sapiens]
Length = 300
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 4 WECPCCICMKPLLSRPHSHQNPACPPANPLQQCHSHLPQRSYSAKRSQGP 53
W+ C CMKP RP N +CH+ + ++S P
Sbjct: 230 WDLVTCFCMKPFAGRPMIECN----------ECHTWIHLSCAKIRKSNVP 269
>gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens]
Length = 962
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 28 PPANPLQQCHSHLPQRSYSAKRSQGPFMWTR-ARLVIICCWVSS 70
PP + LQQC + L SQG + TR L+++C W+S+
Sbjct: 470 PPVSLLQQCTNIL---------SQGSKIQTRVGLLMLLCTWLSN 504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.135 0.542
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,793,396
Number of Sequences: 37866
Number of extensions: 164541
Number of successful extensions: 877
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 21
length of query: 74
length of database: 18,247,518
effective HSP length: 46
effective length of query: 28
effective length of database: 16,505,682
effective search space: 462159096
effective search space used: 462159096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.