Guide to the Human Genome
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Name: SOSTDC1 Sequence: fasta or formatted (206aa) NCBI GI: 23943785
Description:

sclerostin domain containing 1 precursor

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         10           1
 C cysteine            4.9         10           1
 D aspartate           2.4          5           1
 E glutamate           3.9          8           1
 F phenylalanine       1.9          4           1
 G glycine             5.3         11           3
 H histidine           4.4          9           2
 I isoleucine          3.9          8           1
 K lysine              6.8         14           1
 L leucine             7.8         16           2
 M methionine          1.9          4           1
 N asparagine          4.9         10           1
 P proline             5.8         12           2
 Q glutamine           4.9         10           1
 R arginine            8.3         17           2
 S serine             11.2         23           2
 T threonine           6.8         14           1
 V valine              5.3         11           2
 W tryptophan          1.5          3           1
 Y tyrosine            3.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sclerostin domain containing 1 precursor 
SOST                  0.259   sclerostin precursor 
LOC100293983          0.032   PREDICTED: similar to mucin, partial 
CYR61                 0.029   cysteine-rich, angiogenic inducer, 61 
SENP7                 0.020   sentrin/SUMO-specific protease 7 isoform 1 
MUC2                  0.017   mucin 2 precursor 
LOC100294420          0.017   PREDICTED: similar to mucin 2 
TFAP2B                0.017   transcription factor AP-2 beta 
WISP1                 0.012   WNT1 inducible signaling pathway protein 1 isoform 1 ...
WISP1                 0.012   WNT1 inducible signaling pathway protein 1 isoform 2...
WISP3                 0.012   WNT1 inducible signaling pathway protein 3 isoform 3...
WISP3                 0.012   WNT1 inducible signaling pathway protein 3 isoform 1 ...
PDE11A                0.012   phosphodiesterase 11A isoform 4 
MUC19                 0.010   PREDICTED: mucin 19, oligomeric 
MUC19                 0.010   PREDICTED: mucin 19, oligomeric 
MUC19                 0.010   PREDICTED: mucin 19 
ADAMTS7               0.010   ADAM metallopeptidase with thrombospondin type 1 mot...
SFRS12IP1             0.010   P18SRP protein 
MXI1                  0.010   MAX interactor 1 isoform a 
CD72                  0.007   CD72 molecule 
MXI1                  0.007   MAX interactor 1 isoform b 
LIPG                  0.007   endothelial lipase precursor 
PIM2                  0.005   serine/threonine protein kinase pim-2 
NOV                   0.005   nephroblastoma overexpressed precursor 
VPS13B                0.005   vacuolar protein sorting 13B isoform 5 
VPS13B                0.005   vacuolar protein sorting 13B isoform 1 
VPS13B                0.005   vacuolar protein sorting 13B isoform 3 
SFRS11                0.005   splicing factor, arginine/serine-rich 11 
FLOT2                 0.005   flotillin 2 
ZNF570                0.005   zinc finger protein 570 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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