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Search of human proteins with 238550165
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 440 e-124
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 419 e-118
gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 419 e-118
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 419 e-118
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 414 e-116
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 323 9e-89
gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens] 32 0.41
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 31 0.92
gi|18201913 forkhead box N1 [Homo sapiens] 31 0.92
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 29 3.5
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 29 3.5
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 28 5.9
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 28 5.9
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 28 5.9
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 28 5.9
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 28 7.8
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 28 7.8
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 28 7.8
gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sa... 28 7.8
gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sa... 28 7.8
gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sap... 28 7.8
>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
Length = 216
Score = 440 bits (1132), Expect = e-124
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
Query: 181 GPLALAGKPLSLAGDEETECQSSPKHSSRERRRIQQ 216
GPLALAGKPLSLAGDEETECQSSPKHSSRERRRIQQ
Sbjct: 181 GPLALAGKPLSLAGDEETECQSSPKHSSRERRRIQQ 216
>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
Length = 254
Score = 419 bits (1077), Expect = e-118
Identities = 215/254 (84%), Positives = 215/254 (84%), Gaps = 38/254 (14%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
Query: 181 GPLALAG--------------------------------------KPLSLAGDEETECQS 202
GPLALA KPLSLAGDEETECQS
Sbjct: 181 GPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQS 240
Query: 203 SPKHSSRERRRIQQ 216
SPKHSSRERRRIQQ
Sbjct: 241 SPKHSSRERRRIQQ 254
>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 419 bits (1077), Expect = e-118
Identities = 215/253 (84%), Positives = 215/253 (84%), Gaps = 37/253 (14%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
Query: 181 GPLALAG-------------------------------------KPLSLAGDEETECQSS 203
GPLALA KPLSLAGDEETECQSS
Sbjct: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240
Query: 204 PKHSSRERRRIQQ 216
PKHSSRERRRIQQ
Sbjct: 241 PKHSSRERRRIQQ 253
>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 419 bits (1077), Expect = e-118
Identities = 215/253 (84%), Positives = 215/253 (84%), Gaps = 37/253 (14%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLET 120
Query: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID
Sbjct: 121 PQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFID 180
Query: 181 GPLALAG-------------------------------------KPLSLAGDEETECQSS 203
GPLALA KPLSLAGDEETECQSS
Sbjct: 181 GPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSS 240
Query: 204 PKHSSRERRRIQQ 216
PKHSSRERRRIQQ
Sbjct: 241 PKHSSRERRRIQQ 253
>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
Length = 255
Score = 414 bits (1064), Expect = e-116
Identities = 215/255 (84%), Positives = 215/255 (84%), Gaps = 39/255 (15%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ--VPKLELMPL 118
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ VPKLELMPL
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
Query: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178
ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
Query: 179 IDGPLALAG-------------------------------------KPLSLAGDEETECQ 201
IDGPLALA KPLSLAGDEETECQ
Sbjct: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240
Query: 202 SSPKHSSRERRRIQQ 216
SSPKHSSRERRRIQQ
Sbjct: 241 SSPKHSSRERRRIQQ 255
>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
Length = 204
Score = 323 bits (827), Expect = 9e-89
Identities = 166/204 (81%), Positives = 166/204 (81%), Gaps = 37/204 (18%)
Query: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
Query: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169
VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
Query: 170 RSHCEIAVFIDGPLALAG-------------------------------------KPLSL 192
RSHCEIAVFIDGPLALA KPLSL
Sbjct: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180
Query: 193 AGDEETECQSSPKHSSRERRRIQQ 216
AGDEETECQSSPKHSSRERRRIQQ
Sbjct: 181 AGDEETECQSSPKHSSRERRRIQQ 204
>gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens]
Length = 546
Score = 32.0 bits (71), Expect = 0.41
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 13 GSRGRRAPRPREQDRDVQLSKALSYALRHGALKL 46
G+ RR+ E+D DV L++ L+Y LR G ++L
Sbjct: 24 GAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRL 57
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 30.8 bits (68), Expect = 0.92
Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 33/168 (19%)
Query: 7 GRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRH-------GALKLGLPMGADGFVPLG 59
G Q + SR RRA RPR S+ + R G+L L LP G+ G
Sbjct: 107 GPQSISRSRPRRAVRPRPGPWPAAPSRGPVRSCRGPRPGRALGSLPLVLPAGSCGSCQED 166
Query: 60 TLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRA--NQGHSLQVPKLELMP 117
+L N+ + AL++G GL A N+ + P+ P
Sbjct: 167 SL-------------------GNQARPSALEIGASGVGLGSPAPSNRRNRYAPPE---SP 204
Query: 118 LETPQALPPMLVHGTFWKHWPSILLKGL--SCQGRTHIHLAPGLPGDP 163
+P A PP TF P+ K L C G + L P G P
Sbjct: 205 KGSPSAKPPRACSDTFSARQPASTPKALPGGCPGDPELGLPPKRAGAP 252
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 30.8 bits (68), Expect = 0.92
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 146 SCQGRTHIHLAPGL--PGDPGIISGMRSHCEIAVFIDGPLALAGKPLSLAGDEETECQSS 203
SC G+T++HL+PGL PG P + DG L L +P D +
Sbjct: 449 SCYGQTYLHLSPGLAPPGPPQPLFPQP---------DGHLELRAQP-GTPQDSPLPAHTP 498
Query: 204 PKHSSR 209
P HS++
Sbjct: 499 PSHSAK 504
>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
Length = 869
Score = 28.9 bits (63), Expect = 3.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 133 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 173
F K W LL+ + + G T I L+P LPG+ I S + C
Sbjct: 321 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 362
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 28.9 bits (63), Expect = 3.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 133 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 173
F K W LL+ + + G T I L+P LPG+ I S + C
Sbjct: 228 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 269
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 28.1 bits (61), Expect = 5.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 120 TPQALPPMLVHGTFWKHWPSILLKGLSC-QGRTHIHLAPGLPGDPGIISG 168
TP + P L GT +P + + GL H H++PGL G ++ G
Sbjct: 1120 TPPSTDPGLTGGTV-SQFPPLYMPGLEYPNSAAHYHISPGLQGVGPVMGG 1168
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 28.1 bits (61), Expect = 5.9
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 113 LELMPLETPQALPPMLVHG-----TFWKHWPSILLKGLSCQGRTHIHLAPGLPGD-PGII 166
++ +P PQ LPP + H T +P +++ PG+P PG++
Sbjct: 329 VQTVPQPHPQTLPPAVPHSVPQPTTAIPAFPPVMVPPFRVP-------LPGMPIPLPGVL 381
Query: 167 SGMRSHCEIAVFIDGPLALAGKPLSLAG 194
GM I I +A+A P +LAG
Sbjct: 382 PGMAP--PIVPMIHPQVAIAASPATLAG 407
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 28.1 bits (61), Expect = 5.9
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 112 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 171
+ E+ P++ PQA +L P L G+ C + APG+P + G
Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145
Query: 172 HCE 174
CE
Sbjct: 146 ACE 148
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 28.1 bits (61), Expect = 5.9
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 112 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 171
+ E+ P++ PQA +L P L G+ C + APG+P + G
Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145
Query: 172 HCE 174
CE
Sbjct: 146 ACE 148
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 27.7 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 94 PSTGLL------IRANQGHSLQVPKLELMPLETPQALPPMLVH 130
PSTGLL I + + P L+ PL P+ +PP ++H
Sbjct: 823 PSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 865
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 27.7 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 94 PSTGLL------IRANQGHSLQVPKLELMPLETPQALPPMLVH 130
PSTGLL I + + P L+ PL P+ +PP ++H
Sbjct: 830 PSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 872
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 27.7 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 94 PSTGLL------IRANQGHSLQVPKLELMPLETPQALPPMLVH 130
PSTGLL I + + P L+ PL P+ +PP ++H
Sbjct: 845 PSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 887
>gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo
sapiens]
Length = 102
Score = 27.7 bits (60), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
WP + G G + + G+PGD ++G+R HC
Sbjct: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
>gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 27.7 bits (60), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
WP + G G + + G+PGD ++G+R HC
Sbjct: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
>gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo
sapiens]
Length = 202
Score = 27.7 bits (60), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
WP + G G + + G+PGD ++G+R HC
Sbjct: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,616,698
Number of Sequences: 37866
Number of extensions: 493112
Number of successful extensions: 1648
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 27
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.