Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: VMO1 Sequence: fasta or formatted (114aa) NCBI GI: 222144303
Description:

vitelline membrane outer layer 1 isoform 2

Referenced in:

Ovary, Uterus and Placenta

Other entries for this name:
alt prot [102aa] vitelline membrane outer layer 1 isoform 3
alt prot [70aa] vitelline membrane outer layer 1 isoform 4
alt prot [202aa] vitelline membrane outer layer 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         10           1
 C cysteine            2.6          3           1
 D aspartate           5.3          6           2
 E glutamate           5.3          6           1
 F phenylalanine       3.5          4           2
 G glycine            16.7         19           2
 H histidine           1.8          2           1
 I isoleucine          2.6          3           1
 K lysine              1.8          2           1
 L leucine            10.5         12           5
 M methionine          1.8          2           1
 N asparagine          3.5          4           1
 P proline             7.0          8           2
 Q glutamine           2.6          3           1
 R arginine            5.3          6           1
 S serine              4.4          5           1
 T threonine           6.1          7           1
 V valine              6.1          7           2
 W tryptophan          3.5          4           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vitelline membrane outer layer 1 isoform 2 
VMO1                  0.918   vitelline membrane outer layer 1 isoform 1 
VMO1                  0.841   vitelline membrane outer layer 1 isoform 3 
VMO1                  0.532   vitelline membrane outer layer 1 isoform 4 
VGLL2                 0.018   vestigial-like 2 isoform 1 
TRPT1                 0.014   tRNA phosphotransferase 1 isoform 5 
TRPT1                 0.014   tRNA phosphotransferase 1 isoform 4 
TRPT1                 0.014   tRNA phosphotransferase 1 isoform 2 
TRPT1                 0.014   tRNA phosphotransferase 1 isoform 1 
TRPT1                 0.014   tRNA phosphotransferase 1 isoform 1 
TRPT1                 0.014   tRNA phosphotransferase 1 isoform 3 
LOC100287986          0.009   PREDICTED: hypothetical protein XP_002343659 
SELL                  0.009   selectin L precursor 
COL18A1               0.009   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.009   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.009   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
LOC283999             0.005   hypothetical protein LOC283999 
SCARF1                0.005   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.005   scavenger receptor class F, member 1 isoform 1 precu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press