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Search of human proteins with 23397429
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23397429 eukaryotic translation initiation factor 3, subunit
M [Homo sapiens]
(374 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23397429 eukaryotic translation initiation factor 3, subunit ... 737 0.0
gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7... 46 6e-05
gi|157502195 proteasome 26S non-ATPase subunit 13 isoform 2 [Hom... 37 0.029
gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom... 37 0.029
gi|219842262 COP9 constitutive photomorphogenic homolog subunit ... 33 0.32
gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 ... 33 0.32
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 33 0.54
gi|82546832 SEC8 protein isoform b [Homo sapiens] 32 0.71
gi|82546830 SEC8 protein isoform a [Homo sapiens] 32 0.71
gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo ... 32 1.2
gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo... 32 1.2
gi|122937396 coiled-coil domain containing 150 [Homo sapiens] 31 1.6
gi|5174673 semaphorin 3A precursor [Homo sapiens] 31 2.1
gi|19923729 leucine rich repeat containing 8 family, member C [H... 30 2.7
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 30 2.7
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 30 4.6
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 30 4.6
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 30 4.6
gi|4504927 keratin 36 [Homo sapiens] 30 4.6
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 29 7.8
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 29 7.8
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 29 7.8
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 29 7.8
gi|73695475 protein BAP28 [Homo sapiens] 29 7.8
>gi|23397429 eukaryotic translation initiation factor 3, subunit M
[Homo sapiens]
Length = 374
Score = 737 bits (1903), Expect = 0.0
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 180
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 180
Query: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE 300
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE 300
Query: 301 LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN 360
LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN
Sbjct: 301 LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN 360
Query: 361 LNKVKNSLLSLSDT 374
LNKVKNSLLSLSDT
Sbjct: 361 LNKVKNSLLSLSDT 374
>gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7B
[Homo sapiens]
Length = 264
Score = 45.8 bits (107), Expect = 6e-05
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 208 IVRALKDPNAFLFDHLLTLKPVKFL-EGE--LIHDLLTIFVSAKLASYVKFYQNNKDFID 264
I + L+ P ++F LL L V+ L EG LL +F Y+ NK+ +
Sbjct: 31 ISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIA----NKESLP 86
Query: 265 SLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQI-GADDVEAFVIDAVRTKMVYC 323
L + K++ LT + +A K I + + ++L++ ++E +I+AV T ++
Sbjct: 87 ELSTAQQN---KLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQG 143
Query: 324 KIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357
K+DQ + + V R K+ + TL+ W
Sbjct: 144 KLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>gi|157502195 proteasome 26S non-ATPase subunit 13 isoform 2 [Homo
sapiens]
Length = 378
Score = 37.0 bits (84), Expect = 0.029
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 272 QNMAKMRLLTFMGMA----VENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQ 327
Q + K++LL M M +++++F+ + + +I ++VE V+ A+ +V ID+
Sbjct: 269 QLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDE 328
Query: 328 TQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357
++V ++ R QQ + + D L W
Sbjct: 329 VDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 358
>gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Homo
sapiens]
Length = 376
Score = 37.0 bits (84), Expect = 0.029
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 272 QNMAKMRLLTFMGMA----VENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQ 327
Q + K++LL M M +++++F+ + + +I ++VE V+ A+ +V ID+
Sbjct: 267 QLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDE 326
Query: 328 TQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357
++V ++ R QQ + + D L W
Sbjct: 327 VDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
>gi|219842262 COP9 constitutive photomorphogenic homolog subunit 2
isoform 2 [Homo sapiens]
Length = 450
Score = 33.5 bits (75), Expect = 0.32
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 271 EQNMAKMRLLTFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQR 330
E+ + +R + + I + +EL I DVE+ ++ + ++ +IDQ +
Sbjct: 355 EELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQ 414
Query: 331 KVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKVKNSLLS 370
+ + H +++ Y L+ W LN + +++S
Sbjct: 415 LLELDH-------QKRGGARYTALDKWTNQLNSLNQAVVS 447
>gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2
isoform 1 [Homo sapiens]
Length = 443
Score = 33.5 bits (75), Expect = 0.32
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 271 EQNMAKMRLLTFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQR 330
E+ + +R + + I + +EL I DVE+ ++ + ++ +IDQ +
Sbjct: 348 EELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQ 407
Query: 331 KVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKVKNSLLS 370
+ + H +++ Y L+ W LN + +++S
Sbjct: 408 LLELDH-------QKRGGARYTALDKWTNQLNSLNQAVVS 440
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 32.7 bits (73), Expect = 0.54
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 295 DTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTL 354
+T QQ+LQ+ +++E + V+ +M++ ++ + + T + K+Q QL L
Sbjct: 1923 ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKEL 1982
Query: 355 NAWKQNLNKVKNSLLSLSD 373
K L++V + +L+ +
Sbjct: 1983 TDQKSKLDQVLSKVLAAEE 2001
>gi|82546832 SEC8 protein isoform b [Homo sapiens]
Length = 473
Score = 32.3 bits (72), Expect = 0.71
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 305 ADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKV 364
+DDVE + R + Y K D+ +++V H T T + +Q + + + + + +V
Sbjct: 34 SDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQV 93
Query: 365 KNSLLS 370
K +LLS
Sbjct: 94 KENLLS 99
>gi|82546830 SEC8 protein isoform a [Homo sapiens]
Length = 974
Score = 32.3 bits (72), Expect = 0.71
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 305 ADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKV 364
+DDVE + R + Y K D+ +++V H T T + +Q + + + + + +V
Sbjct: 34 SDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQV 93
Query: 365 KNSLLS 370
K +LLS
Sbjct: 94 KENLLS 99
>gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo
sapiens]
Length = 456
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 285 MAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGK 344
MA I+ M Q L + D+ EAF+ + V K ++ K+D+ +
Sbjct: 366 MAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGII----------NF 415
Query: 345 QQWQQLYDTLNAWKQNLNKVKNSLLSL 371
Q+ + + LN W Q L NSL+SL
Sbjct: 416 QRPKDPNNLLNDWSQKL----NSLMSL 438
>gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo
sapiens]
Length = 436
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 285 MAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGK 344
MA I+ M Q L + D+ EAF+ + V K ++ K+D+ +
Sbjct: 346 MAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGII----------NF 395
Query: 345 QQWQQLYDTLNAWKQNLNKVKNSLLSL 371
Q+ + + LN W Q L NSL+SL
Sbjct: 396 QRPKDPNNLLNDWSQKL----NSLMSL 418
>gi|122937396 coiled-coil domain containing 150 [Homo sapiens]
Length = 1101
Score = 31.2 bits (69), Expect = 1.6
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 10 SEEDQAAELRAYLKSKGAEISEENSEGG--LHVDLAQIIEACDVCLKEDDKDVESVMNSV 67
+E+D + A+LK + I EE+S+ LH+++ + + +E+DK + V
Sbjct: 123 TEKDLNPQKTAFLKDRLNAIQEEHSKDLKLLHLEVMNLRQQLRAVKEEEDKAQDEVQRLT 182
Query: 68 VSLLLILEPDKQEALIE 84
+L + + K A+IE
Sbjct: 183 ATLKIASQTKKNAAIIE 199
>gi|5174673 semaphorin 3A precursor [Homo sapiens]
Length = 771
Score = 30.8 bits (68), Expect = 2.1
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 256 YQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISF--DTMQQELQIGADDVEAFVI 313
YQN K+ + L L +++ + ++TF G+A + +F D + L +GA D F
Sbjct: 22 YQNGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKD-HIFSF 80
Query: 314 DAVRTK 319
D V K
Sbjct: 81 DLVNIK 86
>gi|19923729 leucine rich repeat containing 8 family, member C [Homo
sapiens]
Length = 803
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 59 DVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTP 118
D+E + ++V SLL + E D +E ++S+ E++V F+ LR + L+H P
Sbjct: 600 DLERIPHAVFSLLSLQELDLKENNLKSI-EEIVSFQH-----LRKLTVLKLWHNSITYIP 653
Query: 119 VRYTVYCSLIKVAASCGAIQYIPTEL 144
SL +++ S I+ +P+ L
Sbjct: 654 EHIKKLTSLERLSFSHNKIEVLPSHL 679
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 17 ELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKED----DKDVESVMNSVVSLLL 72
++ YL S GA I+ NS+G L +DLA+ +A + LK + DVE+ + LLL
Sbjct: 148 DIARYLLSHGANIAAVNSDGDLPLDLAE-SDAMEGLLKAEIARRGVDVEAAKRAEEELLL 206
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 9 ISEEDQAAELRAYLKSKGAEI----SEENSEGGLHVDLAQIIEACDVCLKEDDKDVES 62
+ ++ +A ELRA L K E+ + EGG L + + L E +D+ES
Sbjct: 1097 VEQQQRAEELRAQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALAEAQEDLES 1154
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 9 ISEEDQAAELRAYLKSKGAEI----SEENSEGGLHVDLAQIIEACDVCLKEDDKDVES 62
+ ++ +A ELRA L K E+ + EGG L + + L E +D+ES
Sbjct: 1089 VEQQQRAEELRAQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALAEAQEDLES 1146
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 9 ISEEDQAAELRAYLKSKGAEI----SEENSEGGLHVDLAQIIEACDVCLKEDDKDVES 62
+ ++ +A ELRA L K E+ + EGG L + + L E +D+ES
Sbjct: 1130 VEQQQRAEELRAQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALAEAQEDLES 1187
>gi|4504927 keratin 36 [Homo sapiens]
Length = 467
Score = 29.6 bits (65), Expect = 4.6
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 60 VESVMNSVVSLL--LILEPDKQEALIESLCEKLV---KFREGERPSLRLQLLSNLFHGMD 114
VE+ +N + +L L L EA +ESL E+L+ K E E LR QL L +D
Sbjct: 192 VEADINGLRRILDELTLCKADLEAQVESLKEELMCLKKNHEEEVSVLRCQLGDRLNVEVD 251
Query: 115 KNTPVRYTV--------YCSLIK--------------------VAASCGAIQYIPTELDQ 146
PV Y +L++ V +S +Q TE+ +
Sbjct: 252 AAPPVDLNKILEDMRCQYEALVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIE 311
Query: 147 VRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHR 206
+R+ ++ + + +H++ L L + + ++ ++ L S E S+ R D R
Sbjct: 312 LRRTVNALEIELQAQHSMRNSLESTLAETEARYSSQLAQMQCLISNVEAQLSEIRCDLER 371
Query: 207 --CIVRALKDPNAFLFDHLLTLKPVKFLEGE 235
+ L D A L + T + LEGE
Sbjct: 372 QNQEYQVLLDVKARLEGEIATYR--HLLEGE 400
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 28.9 bits (63), Expect = 7.8
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 17 ELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDVESVMNSVVSLLLILEP 76
EL+ LK KG E+SE N V L+ + + D K+ D+ +E V + +L
Sbjct: 820 ELKKSLKIKGEELSEAN------VRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLR- 872
Query: 77 DKQEALIESLCEKL---VKFREGERPSLRLQLLS 107
K+E E + L + E E+ L+ +L S
Sbjct: 873 -KKEKEFEETMDALQADIDQLEAEKAELKQRLNS 905
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 28.9 bits (63), Expect = 7.8
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 17 ELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDVESVMNSVVSLLLILEP 76
EL+ LK KG E+SE N V L+ + + D K+ D+ +E V + +L
Sbjct: 934 ELKKSLKIKGEELSEAN------VRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLR- 986
Query: 77 DKQEALIESLCEKL---VKFREGERPSLRLQLLS 107
K+E E + L + E E+ L+ +L S
Sbjct: 987 -KKEKEFEETMDALQADIDQLEAEKAELKQRLNS 1019
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 28.9 bits (63), Expect = 7.8
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 17 ELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDVESVMNSVVSLLLILEP 76
EL+ LK KG E+SE N V L+ + + D K+ D+ +E V + +L
Sbjct: 820 ELKKSLKIKGEELSEAN------VRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLR- 872
Query: 77 DKQEALIESLCEKL---VKFREGERPSLRLQLLS 107
K+E E + L + E E+ L+ +L S
Sbjct: 873 -KKEKEFEETMDALQADIDQLEAEKAELKQRLNS 905
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 28.9 bits (63), Expect = 7.8
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 17 ELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDVESVMNSVVSLLLILEP 76
EL+ LK KG E+SE N V L+ + + D K+ D+ +E V + +L
Sbjct: 954 ELKKSLKIKGEELSEAN------VRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLR- 1006
Query: 77 DKQEALIESLCEKL---VKFREGERPSLRLQLLS 107
K+E E + L + E E+ L+ +L S
Sbjct: 1007 -KKEKEFEETMDALQADIDQLEAEKAELKQRLNS 1039
>gi|73695475 protein BAP28 [Homo sapiens]
Length = 2144
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 164 LLRLLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVD 203
LLR+L++ LV+CK S A V G NA Q R++
Sbjct: 1127 LLRMLFDLLVNCKNSHCAQTVSSVFKG--ISVNAEQVRIE 1164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,457,002
Number of Sequences: 37866
Number of extensions: 487996
Number of successful extensions: 1364
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 24
length of query: 374
length of database: 18,247,518
effective HSP length: 104
effective length of query: 270
effective length of database: 14,309,454
effective search space: 3863552580
effective search space used: 3863552580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.