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Search of human proteins with 23111041
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23111041 sorting nexin 3 isoform b [Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23111041 sorting nexin 3 isoform b [Homo sapiens] 267 2e-72
gi|4507143 sorting nexin 3 isoform a [Homo sapiens] 251 1e-67
gi|23111030 sorting nexin 12 [Homo sapiens] 201 1e-52
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 43 6e-05
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 43 6e-05
gi|4507145 sorting nexin 4 [Homo sapiens] 43 8e-05
gi|23111026 sorting nexin 11 [Homo sapiens] 42 1e-04
gi|23111028 sorting nexin 11 [Homo sapiens] 42 1e-04
gi|23111023 sorting nexin 10 [Homo sapiens] 39 0.002
gi|23111038 sorting nexin 2 [Homo sapiens] 38 0.002
gi|23943858 sorting nexin 8 [Homo sapiens] 37 0.003
gi|153791707 sorting nexin family member 30 [Homo sapiens] 37 0.004
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 35 0.013
gi|23111032 sorting nexin 1 isoform b [Homo sapiens] 35 0.013
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 35 0.013
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 33 0.083
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 33 0.083
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 33 0.083
gi|224177511 sorting nexin 18 isoform c [Homo sapiens] 32 0.14
gi|157057545 sorting nexin 18 isoform a [Homo sapiens] 32 0.14
gi|157057543 sorting nexin 18 isoform b [Homo sapiens] 32 0.14
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 31 0.24
gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1 i... 30 0.41
gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 is... 30 0.41
gi|23397574 sorting nexin 33 [Homo sapiens] 30 0.71
gi|7706706 sorting nexin 9 [Homo sapiens] 29 1.2
gi|46255026 potassium channel tetramerisation domain containing ... 28 2.7
gi|223005950 SH3KBP1 binding protein 1 [Homo sapiens] 27 3.5
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 27 3.5
gi|119964726 insulin-like growth factor 2 receptor precursor [Ho... 27 4.6
>gi|23111041 sorting nexin 3 isoform b [Homo sapiens]
Length = 130
Score = 267 bits (683), Expect = 2e-72
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKVVVPPL 60
MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKVVVPPL
Sbjct: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKVVVPPL 60
Query: 61 PGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDK 120
PGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDK
Sbjct: 61 PGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDK 120
Query: 121 SYTPSKIRHA 130
SYTPSKIRHA
Sbjct: 121 SYTPSKIRHA 130
>gi|4507143 sorting nexin 3 isoform a [Homo sapiens]
Length = 162
Score = 251 bits (640), Expect = 1e-67
Identities = 130/162 (80%), Positives = 130/162 (80%), Gaps = 32/162 (19%)
Query: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK------ 54
MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK
Sbjct: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF 60
Query: 55 --------------------------VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ 88
VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
Sbjct: 61 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ 120
Query: 89 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 130
GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 121 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
>gi|23111030 sorting nexin 12 [Homo sapiens]
Length = 162
Score = 201 bits (512), Expect = 1e-52
Identities = 101/161 (62%), Positives = 119/161 (73%), Gaps = 33/161 (20%)
Query: 1 MAET-VADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRV------ 53
M++T VADTRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R+
Sbjct: 1 MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPI 60
Query: 54 --------------------------KVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERK 87
K+VVPPLPGKA RQLPFRGD+GIF+++FIEER+
Sbjct: 61 FKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERR 120
Query: 88 QGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 128
QGLEQFINK+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 121 QGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 43.1 bits (100), Expect = 6e-05
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 50 EIRVKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCL 109
E +++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 86 EAHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDF 140
Query: 110 HMFL 113
+FL
Sbjct: 141 KIFL 144
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 43.1 bits (100), Expect = 6e-05
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 50 EIRVKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCL 109
E +++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 150 EAHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDF 204
Query: 110 HMFL 113
+FL
Sbjct: 205 KIFL 208
>gi|4507145 sorting nexin 4 [Homo sapiens]
Length = 450
Score = 42.7 bits (99), Expect = 8e-05
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 55 VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
+VVPPLP K D + D +F+E R+ GLE F+ ++A HP+ ++ ++FL
Sbjct: 124 IVVPPLPEKRAEFVWHKLSADNM-DPDFVERRRIGLENFLLRIASHPILCRDKIFYLFLT 182
Query: 115 DE 116
E
Sbjct: 183 QE 184
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 42.4 bits (98), Expect = 1e-04
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 55 VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGTS----DEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 115 DEI 117
++
Sbjct: 128 SQL 130
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 42.4 bits (98), Expect = 1e-04
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 55 VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGTS----DEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 115 DEI 117
++
Sbjct: 128 SQL 130
>gi|23111023 sorting nexin 10 [Homo sapiens]
Length = 201
Score = 38.5 bits (88), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 60 LPGKAFLRQLPFRGDDGIF----DDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQD 115
L A L QLP +F + +++R+QGLE F+ KV + L ++ LH+FLQ
Sbjct: 64 LQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQS 123
Query: 116 EI 117
+
Sbjct: 124 HL 125
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 38.1 bits (87), Expect = 0.002
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 36/129 (27%)
Query: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKV--------------------------------- 55
+EI VS+P+ VG G + Y + K
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 56 --VVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 112
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 113 LQDEIIDKS 121
L+ + ++
Sbjct: 262 LESSELPRA 270
>gi|23943858 sorting nexin 8 [Homo sapiens]
Length = 465
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 56 VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFL 113
+VP LP K L D FIE R++ L++F+N VA HPL + L +FL
Sbjct: 128 MVPALPPKRMLGA----------DREFIEARRRALKRFVNLVARHPLFSEDVVLKLFL 175
>gi|153791707 sorting nexin family member 30 [Homo sapiens]
Length = 437
Score = 37.0 bits (84), Expect = 0.004
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 56 VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFL 113
++PPLP K ++ + R F + F+E R++ L++F+ ++ HP+ ++FL
Sbjct: 151 LIPPLPEKFVVKGVVDR-----FSEEFVETRRKALDKFLKRITDHPVLSFNEHFNIFL 203
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 35.4 bits (80), Expect = 0.013
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 56 VVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + FL+
Sbjct: 207 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLE 266
Query: 115 DEIIDKS 121
E + ++
Sbjct: 267 KEELPRA 273
>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
Length = 457
Score = 35.4 bits (80), Expect = 0.013
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 56 VVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + FL+
Sbjct: 142 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLE 201
Query: 115 DEIIDKS 121
E + ++
Sbjct: 202 KEELPRA 208
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 35.4 bits (80), Expect = 0.013
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 56 VVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + FL+
Sbjct: 207 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLE 266
Query: 115 DEIIDKS 121
E + ++
Sbjct: 267 KEELPRA 273
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 32.7 bits (73), Expect = 0.083
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 78 FDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSK 126
FD +FI++R+ GL +FI + +P N + FLQ + PS+
Sbjct: 82 FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSE 130
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 32.7 bits (73), Expect = 0.083
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 78 FDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSK 126
FD +FI++R+ GL +FI + +P N + FLQ + PS+
Sbjct: 82 FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSE 130
>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 32.7 bits (73), Expect = 0.083
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 78 FDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSK 126
FD +FI++R+ GL +FI + +P N + FLQ + PS+
Sbjct: 82 FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSE 130
>gi|224177511 sorting nexin 18 isoform c [Homo sapiens]
Length = 591
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 69 LPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 102
LP + G F+++FI +R++GL ++N +A HP+
Sbjct: 335 LPEKQATGRFEEDFISKRRKGLIWWMNHMASHPV 368
>gi|157057545 sorting nexin 18 isoform a [Homo sapiens]
Length = 624
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 69 LPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 102
LP + G F+++FI +R++GL ++N +A HP+
Sbjct: 335 LPEKQATGRFEEDFISKRRKGLIWWMNHMASHPV 368
>gi|157057543 sorting nexin 18 isoform b [Homo sapiens]
Length = 628
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 69 LPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 102
LP + G F+++FI +R++GL ++N +A HP+
Sbjct: 335 LPEKQATGRFEEDFISKRRKGLIWWMNHMASHPV 368
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 31.2 bits (69), Expect = 0.24
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 59 PLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEII 118
PLP K + G D FI ER++GL+ ++N + + + N + FL
Sbjct: 74 PLPPKKLI---------GNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLDPNNY 124
Query: 119 DKSYT 123
+YT
Sbjct: 125 SANYT 129
>gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform b [Homo sapiens]
Length = 1054
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 76 GIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKS 121
G FD+ IEER+Q E + A P N + L F + II+ S
Sbjct: 76 GRFDETVIEERRQCAEDLLQFSANIPALYNSKQLEDFFKGGIINDS 121
>gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform a [Homo sapiens]
Length = 1066
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 76 GIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKS 121
G FD+ IEER+Q E + A P N + L F + II+ S
Sbjct: 88 GRFDETVIEERRQCAEDLLQFSANIPALYNSKQLEDFFKGGIINDS 133
>gi|23397574 sorting nexin 33 [Homo sapiens]
Length = 574
Score = 29.6 bits (65), Expect = 0.71
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 69 LPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 128
LP + G F+++FIE+RK+ L +++ + HP+ FL + DK + K R
Sbjct: 289 LPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSC-LDDKQWKMGKRR 347
>gi|7706706 sorting nexin 9 [Homo sapiens]
Length = 595
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 11 LITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKVVVPPLPGKAFLRQLP 70
++ P+ + YG S ++E ++ T R+ ++ + ++ + LP
Sbjct: 253 VVADPRKGSKMYGLKS-YIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLP 311
Query: 71 FRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFL 113
+ G F++ FI+ R + L+ ++ ++ HP+ FL
Sbjct: 312 DKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFL 354
>gi|46255026 potassium channel tetramerisation domain containing 3
[Homo sapiens]
Length = 815
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 21 AYGPPSNFLEIDVSNPQTVGVGRGRFTTYEI 51
AYG S + + V +P+TVG G F T+ +
Sbjct: 389 AYGTSSGAVRVIVQHPETVGSGPQLFQTFTV 419
>gi|223005950 SH3KBP1 binding protein 1 [Homo sapiens]
Length = 707
Score = 27.3 bits (59), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 21 AYGPPSNFLEIDVSNPQTVGVGRGRFTTYEI 51
AYG S + + V +P+TVG G F T+ +
Sbjct: 398 AYGTSSGGVRVIVQHPETVGSGPQLFQTFTV 428
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 74 DDGIFDDNFIEERKQGLEQFINKVAGH---PLAQNERCLHM 111
D G +D +E + + L + I+K P+ +NE CLHM
Sbjct: 2212 DGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIEKNEGCLHM 2252
>gi|119964726 insulin-like growth factor 2 receptor precursor [Homo
sapiens]
Length = 2491
Score = 26.9 bits (58), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 32 DVSNPQTVGVGRGRFTTYEIRVKVVVPP 59
D+ PQ RG T+E + KVV PP
Sbjct: 1962 DIGRPQVFSEVRGCDVTFEWKTKVVCPP 1989
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,453,325
Number of Sequences: 37866
Number of extensions: 236768
Number of successful extensions: 388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 38
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.