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Search of human proteins with 227500367
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|227500367 cyclin D-type binding-protein 1 isoform 1 [Homo
sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|227500367 cyclin D-type binding-protein 1 isoform 1 [Homo sap... 712 0.0
gi|16554568 cyclin D-type binding-protein 1 isoform 2 [Homo sapi... 467 e-132
gi|75677345 transmembrane protein 98 [Homo sapiens] 52 8e-07
gi|75677343 transmembrane protein 98 [Homo sapiens] 52 8e-07
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula... 33 0.52
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni... 33 0.52
gi|112734867 retinitis pigmentosa GTPase regulator interacting p... 31 1.5
gi|34878787 ring finger protein 25 [Homo sapiens] 30 2.6
gi|118498362 kinectin 1 isoform b [Homo sapiens] 30 3.4
gi|118498356 kinectin 1 isoform a [Homo sapiens] 30 3.4
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 3.4
gi|33620775 kinectin 1 isoform a [Homo sapiens] 30 3.4
gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens] 30 4.4
gi|4505999 protein phosphatase 1G [Homo sapiens] 29 5.7
gi|29826282 protein phosphatase 1G [Homo sapiens] 29 5.7
gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Homo ... 29 5.7
gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 29 7.5
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 29 7.5
gi|239742483 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 29 7.5
gi|9945320 cyclin L1 [Homo sapiens] 28 9.8
gi|160420295 hypothetical protein LOC85459 [Homo sapiens] 28 9.8
gi|116517224 coiled-coil domain containing 144B [Homo sapiens] 28 9.8
>gi|227500367 cyclin D-type binding-protein 1 isoform 1 [Homo
sapiens]
Length = 360
Score = 712 bits (1837), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA 60
MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA
Sbjct: 1 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA 60
Query: 61 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG 120
VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG
Sbjct: 61 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG 120
Query: 121 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN 180
ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN
Sbjct: 121 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN 180
Query: 181 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL 240
VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL
Sbjct: 181 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL 240
Query: 241 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC 300
IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC
Sbjct: 241 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC 300
Query: 301 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 360
HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
Sbjct: 301 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 360
>gi|16554568 cyclin D-type binding-protein 1 isoform 2 [Homo
sapiens]
Length = 232
Score = 467 bits (1201), Expect = e-132
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 129 MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH 188
MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH
Sbjct: 1 MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH 60
Query: 189 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 248
EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV
Sbjct: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
Query: 249 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS 308
RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS
Sbjct: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS 180
Query: 309 AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 360
AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
Sbjct: 181 AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 232
>gi|75677345 transmembrane protein 98 [Homo sapiens]
Length = 226
Score = 52.0 bits (123), Expect = 8e-07
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 200 PYSGLLNDTEENNSDNHNHEDDVL-------GFPSNQDLYWSEDDQELIIPCLALVRASK 252
P L+ E + + DDV+ N+D W ED L+ C+A+++
Sbjct: 45 PIVDLIGAMETQSEPSELELDDVVITNPHIEAILENED--WIEDASGLMSHCIAILKICH 102
Query: 253 ACLKK-IRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPM-CHLTVRINSAK 310
+K + M + K A + DI+ ++ ISP VDD+ S+YPP+ L +A
Sbjct: 103 TLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTAL 162
Query: 311 LVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKE 352
L+SV L A H+T + WI ++A + + ++E
Sbjct: 163 LLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLRE 202
>gi|75677343 transmembrane protein 98 [Homo sapiens]
Length = 226
Score = 52.0 bits (123), Expect = 8e-07
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 200 PYSGLLNDTEENNSDNHNHEDDVL-------GFPSNQDLYWSEDDQELIIPCLALVRASK 252
P L+ E + + DDV+ N+D W ED L+ C+A+++
Sbjct: 45 PIVDLIGAMETQSEPSELELDDVVITNPHIEAILENED--WIEDASGLMSHCIAILKICH 102
Query: 253 ACLKK-IRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPM-CHLTVRINSAK 310
+K + M + K A + DI+ ++ ISP VDD+ S+YPP+ L +A
Sbjct: 103 TLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTAL 162
Query: 311 LVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKE 352
L+SV L A H+T + WI ++A + + ++E
Sbjct: 163 LLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLRE 202
>gi|239757810 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 3F [Homo sapiens]
Length = 724
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 221 DVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLKKIRMLVAENGKK-----DQVAQLD 275
D G P Q L E E P A R K+C+K +R AE K D +
Sbjct: 295 DAEGLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRRPAEEELKTKNMDDNTFAMA 354
Query: 276 DIVDISDEISPSVDDLALSIYPPM 299
+ D+ + + P V L +P M
Sbjct: 355 EHPDVQESVGPLVAPTPLRPWPQM 378
>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
3F [Homo sapiens]
Length = 799
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 221 DVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLKKIRMLVAENGKK-----DQVAQLD 275
D G P Q L E E P A R K+C+K +R AE K D +
Sbjct: 295 DAEGLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRRPAEEELKTKNMDDNTFAMA 354
Query: 276 DIVDISDEISPSVDDLALSIYPPM 299
+ D+ + + P V L +P M
Sbjct: 355 EHPDVQESVGPLVAPTPLRPWPQM 378
>gi|112734867 retinitis pigmentosa GTPase regulator interacting
protein 1 [Homo sapiens]
Length = 1286
Score = 31.2 bits (69), Expect = 1.5
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 83 QETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEVLSVTPTQ 142
Q + C Q A ++A I K + I L+KL+ +V AQL EV T
Sbjct: 253 QRSSLECAQKAAELRASIK-----EKVELIRLKKLLHERNASLVMTKAQLTEVQEAYETL 307
Query: 143 SPENNDLISYNSVWVACQQMPQI-----PRDNKAAALLMLTKNVDFVKDAHEEMEQAVEE 197
+N ++S + +Q+ ++ KA +L ++V ++ +E ++ VE+
Sbjct: 308 LQKNQGILS-AAHEALLKQVNELRAELKEESKKAVSLKSQLEDVSILQMTLKEFQERVED 366
Query: 198 CDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSED 236
+ LLND + ++ D S+ +WS +
Sbjct: 367 LEKERKLLNDNYDKLLESMLDSSD-----SSSQPHWSNE 400
>gi|34878787 ring finger protein 25 [Homo sapiens]
Length = 459
Score = 30.4 bits (67), Expect = 2.6
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 23/110 (20%)
Query: 6 APAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTE-----EFNREMFWRRLN--- 57
A A P P+E + AE LR R R+ + Q+ E R ++ L
Sbjct: 210 ASLKAAPEPQQPMELYQPSAESLRQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPP 269
Query: 58 -----EAAVTVSR----------EATTLTIVFSQLPLPSPQETQKFCEQV 92
E+AV VS+ E +T V S LP P P TQ CE++
Sbjct: 270 APAEPESAVDVSKGSQPPSTLAAELSTSPAVQSTLPPPLPVATQHICEKI 319
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 30.0 bits (66), Expect = 3.4
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 189 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 248
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 249 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 291
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.0 bits (66), Expect = 3.4
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 189 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 248
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 249 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 291
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.0 bits (66), Expect = 3.4
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 189 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 248
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 249 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 291
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.0 bits (66), Expect = 3.4
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 189 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 248
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 249 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 291
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens]
Length = 989
Score = 29.6 bits (65), Expect = 4.4
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 119 RGATLDIVDGMAQLMEVLSVTPTQSPE---------NNDLISYNSVWVACQQMPQIPRDN 169
+GAT DI++ L+E + P+ +P ++ ++SY+SV A + RD
Sbjct: 33 KGATWDILNLADALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDL 92
Query: 170 KAAALLMLTKNVDFVKDAHEEMEQAVEEC 198
ALL + H + E+ + C
Sbjct: 93 CVQALLDIMDMFCDRLSCHGKAEECIGLC 121
>gi|4505999 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 164 QIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVL 223
++PR K+ D ++ E+ E+ EE D YS + EE+ D E+D
Sbjct: 247 KLPRVAKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDD- 305
Query: 224 GFPSNQDLYWSEDDQELIIP 243
E+++E+++P
Sbjct: 306 ----------EEEEEEMMVP 315
>gi|29826282 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 164 QIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVL 223
++PR K+ D ++ E+ E+ EE D YS + EE+ D E+D
Sbjct: 247 KLPRVAKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDD- 305
Query: 224 GFPSNQDLYWSEDDQELIIP 243
E+++E+++P
Sbjct: 306 ----------EEEEEEMMVP 315
>gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Homo
sapiens]
Length = 463
Score = 29.3 bits (64), Expect = 5.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 318 ALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 360
+L + K ++ P P WI +L I +N I +T L+L
Sbjct: 152 SLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDL 194
>gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 7.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 7 PAAAVPTLAS--PLEQLRHLAEELRLLLPRVRVGEAQETT 44
PAA P AS PL++LR + +++PRVRV +A T
Sbjct: 396 PAAPAPRKASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPT 435
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 28.9 bits (63), Expect = 7.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 7 PAAAVPTLAS--PLEQLRHLAEELRLLLPRVRVGEAQETT 44
PAA P AS PL++LR + +++PRVRV +A T
Sbjct: 908 PAAPAPRKASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPT 947
>gi|239742483 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 7.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 7 PAAAVPTLAS--PLEQLRHLAEELRLLLPRVRVGEAQETT 44
PAA P AS PL++LR + +++PRVRV +A T
Sbjct: 396 PAAPAPRKASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPT 435
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 28.5 bits (62), Expect = 9.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 163 PQIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNS 213
P PR+ KA ++ NV VK E+ +QA + PY+G+ D++ + +
Sbjct: 340 PSSPREVKAEEKSPISINVKTVKKEPEDRQQASK--SPYNGVRKDSKRSRN 388
>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
Length = 2601
Score = 28.5 bits (62), Expect = 9.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 39 EAQETTEEFNREMFWRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQK 87
+A + +E E+ +RL+E VS E + SQ+P+ + TQK
Sbjct: 1517 KAIRSIQEVQEELLLQRLSELEKRVSSEQVCSSSFVSQVPVADSERTQK 1565
>gi|116517224 coiled-coil domain containing 144B [Homo sapiens]
Length = 725
Score = 28.5 bits (62), Expect = 9.8
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 133 MEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEME 192
+E LS P S +++ + + Q+ + L + +NV K+ EEME
Sbjct: 473 LENLSSLPPDSDRTSEVYLHEELQQDMQKFKNEVNTLEEEFLALKKENVQLHKEVEEEME 532
Query: 193 QAVEECDPYSGLLND--TEENNSDNHNHE 219
+ SG L D T N+ D N +
Sbjct: 533 KHRSNSTELSGTLTDGTTVGNDDDGLNQQ 561
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,199,601
Number of Sequences: 37866
Number of extensions: 551475
Number of successful extensions: 1794
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 27
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.