Guide to the Human Genome
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Name: CCNDBP1 Sequence: fasta or formatted (232aa) NCBI GI: 16554568
Description:

cyclin D-type binding-protein 1 isoform 2

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [360aa] cyclin D-type binding-protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         17           3
 C cysteine            2.6          6           1
 D aspartate           9.1         21           2
 E glutamate           8.2         19           2
 F phenylalanine       0.9          2           1
 G glycine             1.3          3           1
 H histidine           2.6          6           1
 I isoleucine          6.5         15           2
 K lysine              5.6         13           2
 L leucine            11.6         27           2
 M methionine          3.4          8           1
 N asparagine          6.5         15           2
 P proline             5.6         13           2
 Q glutamine           5.2         12           2
 R arginine            2.2          5           1
 S serine              7.8         18           1
 T threonine           3.4          8           1
 V valine              7.3         17           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin D-type binding-protein 1 isoform 2 
CCNDBP1               1.000   cyclin D-type binding-protein 1 isoform 1 
TMEM98                0.061   transmembrane protein 98 
TMEM98                0.061   transmembrane protein 98 
LOC100293149          0.018   PREDICTED: similar to protein phosphatase 1, regula...
PPP1R3F               0.018   protein phosphatase 1, regulatory (inhibitor) subuni...
KTN1                  0.011   kinectin 1 isoform b 
KTN1                  0.011   kinectin 1 isoform a 
KTN1                  0.011   kinectin 1 isoform c 
KTN1                  0.011   kinectin 1 isoform a 
PPM1G                 0.009   protein phosphatase 1G 
PPM1G                 0.009   protein phosphatase 1G 
NDUFS2                0.009   NADH dehydrogenase (ubiquinone) Fe-S protein 2 
CCNL1                 0.007   cyclin L1 
CCDC144B              0.007   coiled-coil domain containing 144B 
ING1                  0.007   inhibitor of growth family, member 1 isoform A [Homo...
ING1                  0.007   inhibitor of growth family, member 1 isoform B [Homo...
ING1                  0.007   inhibitor of growth family, member 1 isoform C [Homo...
ING1                  0.007   inhibitor of growth family, member 1 isoform D [Homo...
INPP5A                0.007   inositol polyphosphate-5-phosphatase A 
CCDC144A              0.007   coiled-coil domain containing 144A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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