Guide to the Human Genome
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Name: SGMS2 Sequence: fasta or formatted (365aa) NCBI GI: 22749271
Description:

sphingomyelin synthase 2

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt mRNA [365aa] sphingomyelin synthase 2
alt mRNA [365aa] sphingomyelin synthase 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         15           2
 C cysteine            2.7         10           2
 D aspartate           2.7         10           1
 E glutamate           5.2         19           3
 F phenylalanine       6.0         22           2
 G glycine             5.8         21           3
 H histidine           2.7         10           1
 I isoleucine          8.8         32           2
 K lysine              6.6         24           2
 L leucine             9.0         33           2
 M methionine          1.6          6           1
 N asparagine          3.8         14           1
 P proline             6.0         22           2
 Q glutamine           2.5          9           1
 R arginine            4.1         15           2
 S serine              7.4         27           2
 T threonine           6.6         24           2
 V valine              5.5         20           2
 W tryptophan          3.8         14           2
 Y tyrosine            4.9         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sphingomyelin synthase 2 
SGMS2                 1.000   sphingomyelin synthase 2 
SGMS2                 1.000   sphingomyelin synthase 2 
SGMS1                 0.582   sphingomyelin synthase 1 
SAMD8                 0.183   sterile alpha motif domain containing 8 
USH2A                 0.009   usherin isoform B 
USH2A                 0.009   usherin isoform A 
EHMT2                 0.009   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.009   euchromatic histone-lysine N-methyltransferase 2 is...
DPCR1                 0.008   diffuse panbronchiolitis critical region 1 protein ...
LOC100294236          0.008   PREDICTED: similar to diffuse panbronchiolitis crit...
MMD                   0.007   monocyte to macrophage differentiation-associated pr...
SLC26A8               0.007   solute carrier family 26, member 8 isoform a 
SLC26A8               0.007   solute carrier family 26, member 8 isoform b 
FLJ10357              0.007   hypothetical protein LOC55701 
PI4KA                 0.005   phosphatidylinositol 4-kinase type 3 alpha isoform ...
STK32B                0.005   serine/threonine kinase 32B 
VN1R4                 0.004   vomeronasal 1 receptor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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