Guide to the Human Genome
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Name: CCNYL1 Sequence: fasta or formatted (289aa) NCBI GI: 22749085
Description:

cyclin Y-like 1 isoform 2

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [308aa] cyclin Y-like 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         22           2
 C cysteine            2.4          7           1
 D aspartate           7.3         21           2
 E glutamate           6.2         18           2
 F phenylalanine       4.8         14           1
 G glycine             1.0          3           1
 H histidine           2.8          8           1
 I isoleucine          6.2         18           1
 K lysine              5.9         17           2
 L leucine            11.1         32           2
 M methionine          1.4          4           1
 N asparagine          5.5         16           2
 P proline             3.8         11           1
 Q glutamine           3.1          9           1
 R arginine            6.9         20           2
 S serine              8.3         24           2
 T threonine           5.2         15           2
 V valine              5.5         16           1
 W tryptophan          1.0          3           1
 Y tyrosine            3.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin Y-like 1 isoform 2 
CCNY                  0.758   cyclin Y isoform 1 
CCNY                  0.752   cyclin Y isoform 2 
CCNYL1                0.732   cyclin Y-like 1 isoform 1 
CCNYL2                0.575   PREDICTED: cyclin Y-like 2 
CCNYL2                0.575   PREDICTED: cyclin Y-like 2 
CCNYL2                0.575   PREDICTED: cyclin Y-like 2 
CCNYL3                0.379   PREDICTED: cyclin Y-like 3 
CCNYL3                0.379   PREDICTED: cyclin Y-like 3 
CCNYL3                0.379   PREDICTED: cyclin Y-like 3 
AGAP5                 0.145   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP4                 0.140   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP8                 0.140   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP7                 0.138   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP9                 0.136   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.136   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP6                 0.135   centaurin, gamma-like family, member 3 
LOC100132781          0.101   PREDICTED: similar to hCG1647409 
LOC100132781          0.101   PREDICTED: similar to hCG1647409 
LOC100132781          0.101   PREDICTED: hypothetical protein LOC100132781 
AGAP11                0.018   ankyrin repeat and GTPase domain Arf GTPase activat...
OR2M4                 0.013   olfactory receptor, family 2, subfamily M, member 4 ...
FAT4                  0.011   FAT tumor suppressor homolog 4 
OR2M3                 0.007   olfactory receptor, family 2, subfamily M, member 3 ...
OR2M5                 0.007   olfactory receptor, family 2, subfamily M, member 5 ...
OR2M7                 0.007   olfactory receptor, family 2, subfamily M, member 7 ...
FAM92A1               0.005   hypothetical protein LOC137392 
PDP2                  0.005   pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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