Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132781 Sequence: fasta or formatted (150aa) NCBI GI: 169179067
Description:

PREDICTED: similar to hCG1647409

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt mRNA [150aa] PREDICTED: similar to hCG1647409
alt mRNA [150aa] PREDICTED: hypothetical protein LOC100132781
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          8           1
 C cysteine            5.3          8           2
 D aspartate           8.7         13           2
 E glutamate           6.0          9           2
 F phenylalanine       3.3          5           1
 G glycine             4.0          6           1
 H histidine           2.0          3           1
 I isoleucine          7.3         11           2
 K lysine              5.3          8           1
 L leucine            14.7         22           2
 M methionine          3.3          5           1
 N asparagine          2.7          4           2
 P proline             2.7          4           1
 Q glutamine           1.3          2           1
 R arginine            4.0          6           1
 S serine              8.0         12           2
 T threonine           6.0          9           1
 V valine              4.7          7           2
 W tryptophan          0.7          1           1
 Y tyrosine            4.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1647409 
LOC100132781          1.000   PREDICTED: similar to hCG1647409 
LOC100132781          1.000   PREDICTED: hypothetical protein LOC100132781 
CCNYL2                0.270   PREDICTED: cyclin Y-like 2 
CCNYL2                0.270   PREDICTED: cyclin Y-like 2 
CCNYL2                0.270   PREDICTED: cyclin Y-like 2 
CCNYL1                0.199   cyclin Y-like 1 isoform 1 
CCNYL1                0.199   cyclin Y-like 1 isoform 2 
CCNY                  0.167   cyclin Y isoform 1 
CCNY                  0.167   cyclin Y isoform 2 
CCNYL3                0.103   PREDICTED: cyclin Y-like 3 
CCNYL3                0.103   PREDICTED: cyclin Y-like 3 
CCNYL3                0.103   PREDICTED: cyclin Y-like 3 
CBLC                  0.011   Cas-Br-M (murine) ecotropic retroviral transforming...
CBLC                  0.011   Cas-Br-M (murine) ecotropic retroviral transforming...
LRP1B                 0.007   low density lipoprotein-related protein 1B precursor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press