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Search of human proteins with 226958663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
(1736 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens] 3441 0.0
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens] 3252 0.0
gi|27477134 nucleoporin 210 [Homo sapiens] 1462 0.0
gi|239753643 PREDICTED: similar to Putative uncharacterized prot... 84 9e-16
gi|66472382 nischarin [Homo sapiens] 33 1.8
gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled... 32 5.4
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled... 32 5.4
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 32 5.4
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens] 32 7.0
gi|62988328 ankyrin repeat domain 50 [Homo sapiens] 32 7.0
gi|116534898 desmoglein 2 preproprotein [Homo sapiens] 31 9.2
>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
Length = 1736
Score = 3441 bits (8922), Expect = 0.0
Identities = 1736/1736 (100%), Positives = 1736/1736 (100%)
Query: 1 MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLE 60
MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLE
Sbjct: 1 MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLE 60
Query: 61 AQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELR 120
AQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELR
Sbjct: 61 AQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELR 120
Query: 121 CDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESA 180
CDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESA
Sbjct: 121 CDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESA 180
Query: 181 REELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKK 240
REELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKK
Sbjct: 181 REELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKK 240
Query: 241 VAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHR 300
VAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHR
Sbjct: 241 VAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHR 300
Query: 301 VALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLG 360
VALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLG
Sbjct: 301 VALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLG 360
Query: 361 FTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYH 420
FTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYH
Sbjct: 361 FTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYH 420
Query: 421 IVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMG 480
IVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMG
Sbjct: 421 IVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMG 480
Query: 481 MLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIK 540
MLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIK
Sbjct: 481 MLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIK 540
Query: 541 IHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGV 600
IHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGV
Sbjct: 541 IHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGV 600
Query: 601 FTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPV 660
FTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPV
Sbjct: 601 FTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPV 660
Query: 661 EVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYR 720
EVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYR
Sbjct: 661 EVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYR 720
Query: 721 IQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPL 780
IQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPL
Sbjct: 721 IQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPL 780
Query: 781 PQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVA 840
PQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVA
Sbjct: 781 PQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVA 840
Query: 841 KDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDV 900
KDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDV
Sbjct: 841 KDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDV 900
Query: 901 TVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFT 960
TVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFT
Sbjct: 901 TVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFT 960
Query: 961 LEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFR 1020
LEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFR
Sbjct: 961 LEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFR 1020
Query: 1021 NMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
NMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE
Sbjct: 1021 NMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
Query: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA
Sbjct: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
Query: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ
Sbjct: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
Query: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT
Sbjct: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
Query: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA
Sbjct: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
Query: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY
Sbjct: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
Query: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG
Sbjct: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
Query: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTH 1500
PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTH
Sbjct: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTH 1500
Query: 1501 LVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRL 1560
LVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRL
Sbjct: 1501 LVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRL 1560
Query: 1561 MLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQF 1620
MLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQF
Sbjct: 1561 MLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQF 1620
Query: 1621 SNTLLDIPASKVFQVHSDFSMEKDHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAY 1680
SNTLLDIPASKVFQVHSDFSMEKDHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAY
Sbjct: 1621 SNTLLDIPASKVFQVHSDFSMEKDHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAY 1680
Query: 1681 NAFLNKIQTVPVVYVPTLGTPQPGFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH 1736
NAFLNKIQTVPVVYVPTLGTPQPGFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH
Sbjct: 1681 NAFLNKIQTVPVVYVPTLGTPQPGFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH 1736
>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
Length = 1888
Score = 3252 bits (8432), Expect = 0.0
Identities = 1643/1643 (100%), Positives = 1643/1643 (100%)
Query: 1 MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLE 60
MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLE
Sbjct: 1 MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLE 60
Query: 61 AQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELR 120
AQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELR
Sbjct: 61 AQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELR 120
Query: 121 CDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESA 180
CDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESA
Sbjct: 121 CDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESA 180
Query: 181 REELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKK 240
REELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKK
Sbjct: 181 REELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKK 240
Query: 241 VAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHR 300
VAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHR
Sbjct: 241 VAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHR 300
Query: 301 VALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLG 360
VALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLG
Sbjct: 301 VALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLG 360
Query: 361 FTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYH 420
FTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYH
Sbjct: 361 FTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYH 420
Query: 421 IVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMG 480
IVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMG
Sbjct: 421 IVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMG 480
Query: 481 MLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIK 540
MLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIK
Sbjct: 481 MLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIK 540
Query: 541 IHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGV 600
IHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGV
Sbjct: 541 IHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGV 600
Query: 601 FTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPV 660
FTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPV
Sbjct: 601 FTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPV 660
Query: 661 EVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYR 720
EVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYR
Sbjct: 661 EVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYR 720
Query: 721 IQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPL 780
IQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPL
Sbjct: 721 IQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPL 780
Query: 781 PQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVA 840
PQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVA
Sbjct: 781 PQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVA 840
Query: 841 KDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDV 900
KDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDV
Sbjct: 841 KDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDV 900
Query: 901 TVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFT 960
TVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFT
Sbjct: 901 TVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFT 960
Query: 961 LEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFR 1020
LEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFR
Sbjct: 961 LEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFR 1020
Query: 1021 NMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
NMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE
Sbjct: 1021 NMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
Query: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA
Sbjct: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
Query: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ
Sbjct: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
Query: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT
Sbjct: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
Query: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA
Sbjct: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
Query: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY
Sbjct: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
Query: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG
Sbjct: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
Query: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTH 1500
PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTH
Sbjct: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTH 1500
Query: 1501 LVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRL 1560
LVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRL
Sbjct: 1501 LVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRL 1560
Query: 1561 MLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQF 1620
MLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQF
Sbjct: 1561 MLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQF 1620
Query: 1621 SNTLLDIPASKVFQVHSDFSMEK 1643
SNTLLDIPASKVFQVHSDFSMEK
Sbjct: 1621 SNTLLDIPASKVFQVHSDFSMEK 1643
Score = 193 bits (490), Expect = 1e-48
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1644 DHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLNKIQTVPVVYVPTLGTPQP 1703
DHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLNKIQTVPVVYVPTLGTPQP
Sbjct: 1796 DHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLNKIQTVPVVYVPTLGTPQP 1855
Query: 1704 GFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH 1736
GFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH
Sbjct: 1856 GFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH 1888
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 1462 bits (3785), Expect = 0.0
Identities = 784/1677 (46%), Positives = 1074/1677 (64%), Gaps = 20/1677 (1%)
Query: 11 RGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLEAQRGCYTWHS 70
RG GL L L +L A KLN+P+VLLPF R RV F LEA GCY W S
Sbjct: 4 RGRGLL----LLTLSVLLAAGPSAAAAKLNIPKVLLPFTRAT-RVNFTLEASEGCYRWLS 58
Query: 71 THHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELRCDVKVDVINS 130
T + ++EPL + CSQKAV+ A TQP RL+SII A +I T LRCD VD+I+
Sbjct: 59 TRPEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHD 118
Query: 131 IEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESAR-EELSSKIR 189
I+IVS RELY++DSPLEL ++ALD+EGNTFS+LAG++FEW+I +D+E+ R + + +R
Sbjct: 119 IQIVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALR 178
Query: 190 ILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLL 249
IL + E+ Y PP YI+EMEK KQGD ILVSG++TG++ +K RI E YK V A +RLL
Sbjct: 179 ILTFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLL 238
Query: 250 VLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHRVALNGSHSE 309
+LENI L P++D+YL+VGT I Y+V K+ QG++TE+ P + Y L+LQ+ G +
Sbjct: 239 ILENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPAR 298
Query: 310 KVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLGFTVQPGNRW 369
VA+L T+MVTA QLGQ++LV H+++ M+ S LPN TIYVVEPG+LGFTV PG+RW
Sbjct: 299 PVAVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRW 358
Query: 370 SLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYHIVKALKDGV 429
LE G++Y IT++VFDK S KVY+SDN+RI P E+FE ++ NGSYH ++ALK G
Sbjct: 359 VLETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQ 418
Query: 430 VVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMGMLYRYKVQV 489
I+A+LTS++ Q+ + ++ + +QQEV+I+ PI L P L FP P Y+Y ++
Sbjct: 419 TAIDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRA 478
Query: 490 EGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIKIHVLKLNKM 549
GGSGNF+W+SS+ V VT KGV+T G G S + A DVQNP +GE+K++V++ + M
Sbjct: 479 HGGSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSM 538
Query: 550 ELLPFHADVEIGQIIEIPIAMYHINKE-TKEAMAFTDCSHLSLDLNMDKQGVFTLLKEGI 608
E P + +GQ +E+P+ + + E + +DCSH L + ++ QGVF L G
Sbjct: 539 EFAPCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLP-GR 597
Query: 609 QRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPVEVALVTWQ 668
PG HCS + A++ G T + VS +L + T AAY PLKA++P VALVT
Sbjct: 598 LPPGSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLG 657
Query: 669 SVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYRIQCLDLGE 728
S KEM+FEGGPRPWILEPS+FF + AE T+ IG+A S R Q+ + C LGE
Sbjct: 658 SSKEMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGE 717
Query: 729 QVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPLPQHNKWLI 788
QV+ +GN P + NP PAVE V+F+CA P+ +++ PVY P CPL Q NK ++
Sbjct: 718 QVIALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVV 777
Query: 789 PVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVAKDDGSGQT 848
PVS R+ L+LA +DQ R+FDNFSSL ++W+S+ LA E +++V++DD SGQ
Sbjct: 778 PVSSHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQK 837
Query: 849 RLHGHQILKVHQIKGTVLIGVNFVGYSEK-------KSPKEISNLPRSVDVELLLVDDVT 901
+LHG Q + VH+ GT I GY E K P + +P S +EL+LV+DV
Sbjct: 838 KLHGLQAILVHEASGTTAITATATGYQESHLSSARTKQPHD-PLVPLSASIELILVEDVR 896
Query: 902 VVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFTL 961
V PE TIYNHP ++ + EGSGYF +N+S VV + Y EA + PL PG T+
Sbjct: 897 VSPEEVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTI 956
Query: 962 EVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRN 1021
++DLCL F PA A + VSDIQEL + ++DKVEI KTV VRVL K+PF KYF
Sbjct: 957 MIHDLCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPF 1016
Query: 1022 MELKLQLASAIVTLTPMEQQ-DEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
M+LKL+ AS I+TL +++ D Y+ +++R IGQT+L A +K G++ S P+ IE
Sbjct: 1017 MDLKLRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIE 1076
Query: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
VFPPFRL+P K+TL+ MQV SEGGPQPQS + FSISN++VA+V+ G V G +G
Sbjct: 1077 VFPPFRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNG 1136
Query: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
V G +Q V+ +TGKV++ SQD VQ+EV+ LRAVRI A R+ T T+MP+YV G+T+ Q
Sbjct: 1137 TVSGLVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQ 1196
Query: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
PFSF NA PGLTFHWS++KRDVLDL RH E ++LP ++NFAM V + GRT ++V
Sbjct: 1197 NPFSFGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVV 1256
Query: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
V ++ +SGQ G ELSDE+Q+ VFEKLQL PE + EQILM NS +KL TNR+GAA
Sbjct: 1257 VKAVDPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAA 1316
Query: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
+S RVL V+ D +G L +GS+ GT+ +EV + EPFG NQT I V+V+PV+Y
Sbjct: 1317 SLSYRVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSY 1376
Query: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
LRVS P L+T L A PLGM++TFTV F+++ G+ FH H++ L A NRDD + IG
Sbjct: 1377 LRVSMSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIG 1436
Query: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPD-TKLTFVGDIICFST 1499
G N T + + V+ GLTL+ +WD HPG++D++P+ V AI P+ + VGD++C +T
Sbjct: 1437 KGPTNNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLAT 1496
Query: 1500 HLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSR 1559
L S G G W SAN+IL D TGV VAR+ G+ +++++ G ++TY+EVVV+ R
Sbjct: 1497 VLTSLEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQR 1556
Query: 1560 LMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQ 1619
+M + L T+ +T K+ + G NL+G CTP Q + + L P TL+ C Q
Sbjct: 1557 IMARH-LHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQR-EVIQALHPETLISCQSQ 1614
Query: 1620 FSNTLLDIPASKVFQVHSDFSMEKDHCEDSAILKRFTGSYQILLLTLFAVLASTASI 1676
F + D P+ VF V F S + R T + L L +AS+
Sbjct: 1615 FKPAVFDFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASL 1671
Score = 42.0 bits (97), Expect = 0.005
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 1649 SAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLN-KIQTVPVVYVPTLGTPQPGFFN 1707
+++ + F SYQ++ TLFA+LA TA + +AY+ + VP P +
Sbjct: 1797 ASLFQHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYF 1856
Query: 1708 STSSPPHFMSLQPPLAQSRLQHWLWS 1733
+ SSP +L PP ++ LWS
Sbjct: 1857 AASSPTSPNAL-PPARKASPPSGLWS 1881
>gi|239753643 PREDICTED: similar to Putative uncharacterized protein
C3orf46 [Homo sapiens]
Length = 149
Score = 84.3 bits (207), Expect = 9e-16
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 37/131 (28%)
Query: 1137 VGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILA------------------ 1178
+G V G +Q V+ +TGKV++ SQD VQ++V+ L AVRI +
Sbjct: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
Query: 1179 ---------------AATRLIT----ATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSMS 1219
A T L+T + M +Y+ +T+ Q PFSF NA PGLTFHWS++
Sbjct: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
Query: 1220 KRDVLDLVPRH 1230
KRD+LDL +H
Sbjct: 121 KRDILDLQGQH 131
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 33.5 bits (75), Expect = 1.8
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 975 TAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQ-LASAIV 1033
T R SD +L L+ + +IDK +L +++G + R K +++E+ LQ L +A
Sbjct: 45 TVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFP 104
Query: 1034 TLTP 1037
+TP
Sbjct: 105 GVTP 108
>gi|225543463 tetratricopeptide repeat, ankyrin repeat and
coiled-coil containing 1 isoform 2 [Homo sapiens]
Length = 1390
Score = 32.0 bits (71), Expect = 5.4
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 818 LEWKSSNETLAHFEDYKSVE-----MVAKDDGS---GQTRLHGHQILKVHQIKG-TVLIG 868
L W++ E A + ++ M ++ +G QT GH ILK H KG + G
Sbjct: 813 LVWRADGENTAFLCEPRNGHALLAFMFSRQEGKLNRQQTMELGHHILKAHIFKGLSKKTG 872
Query: 869 VN-------FVGYSEKKSPKEISNLPR----SVDVELLL------VDDVTVVPENATI-- 909
++ ++GYS + +++L +V V LL V+ T V NA I
Sbjct: 873 ISSSHLQALWIGYSTEGLSAALASLRNLYTPNVKVSRLLILGGANVNYRTEVLNNAPILC 932
Query: 910 -YNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPL 954
+H +E +L+ G L +SE G+ + Y A ++LV L
Sbjct: 933 VQSHLGHEEVVTLLLEFGACLDGTSENGMTALCYAAAAGHMKLVCL 978
>gi|225543461 tetratricopeptide repeat, ankyrin repeat and
coiled-coil containing 1 isoform 1 [Homo sapiens]
Length = 1861
Score = 32.0 bits (71), Expect = 5.4
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 818 LEWKSSNETLAHFEDYKSVE-----MVAKDDGS---GQTRLHGHQILKVHQIKG-TVLIG 868
L W++ E A + ++ M ++ +G QT GH ILK H KG + G
Sbjct: 821 LVWRADGENTAFLCEPRNGHALLAFMFSRQEGKLNRQQTMELGHHILKAHIFKGLSKKTG 880
Query: 869 VN-------FVGYSEKKSPKEISNLPR----SVDVELLL------VDDVTVVPENATI-- 909
++ ++GYS + +++L +V V LL V+ T V NA I
Sbjct: 881 ISSSHLQALWIGYSTEGLSAALASLRNLYTPNVKVSRLLILGGANVNYRTEVLNNAPILC 940
Query: 910 -YNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPL 954
+H +E +L+ G L +SE G+ + Y A ++LV L
Sbjct: 941 VQSHLGHEEVVTLLLEFGACLDGTSENGMTALCYAAAAGHMKLVCL 986
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 32.0 bits (71), Expect = 5.4
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 741 VLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPLPQHNKWLIPVSRLRDTVLEL 800
V P PA +L V + A P S PV K PA CP P H+ L+P ++L
Sbjct: 176 VTKPVPAGGLLSV-LLTAEPHSTPGHPVKKEPA-EPTCPAPAHDLQLLPQQAGMASILAT 233
Query: 801 AVFDQ 805
AV ++
Sbjct: 234 AVINK 238
>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
Length = 2156
Score = 31.6 bits (70), Expect = 7.0
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 1513 ISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRLMLSYD-LKTYLT 1571
ISA++ V G+ R P + ++F + G KT R V++ S R+ S++ +LT
Sbjct: 133 ISAHSPPHPVAVAAPGMPRPPRSLVVFRN--GDPKTRRAVLL--SRRVTQSFEAFLQHLT 188
Query: 1572 NTLNSTVFKLFITTGRNGVNLKGFCTPNQALA-------------ITKVLLPATL 1613
+ V KL+ T GR +L+ + A+ I K LLPA L
Sbjct: 189 EVMQRPVVKLYATDGRRVPSLQAVILSSGAVVAAGREPFKPGNYDIQKYLLPARL 243
>gi|62988328 ankyrin repeat domain 50 [Homo sapiens]
Length = 1429
Score = 31.6 bits (70), Expect = 7.0
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 22 HRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLEAQRGCYTWHSTHHDAVTVEPL 81
HRL+ L+ +G N+++ GR+PF+L +Q G H+D V + L
Sbjct: 859 HRLICEALIEQGARTNEID----------NDGRIPFILASQEG-------HYDCVQI--L 899
Query: 82 YENGTLCSQKAVLIAESTQPIRLSSIILAREIVT---DHELRCDVK-VDVINSIEIVSRA 137
EN + Q+ + +R++++ R+IV H + K D ++ I++
Sbjct: 900 LENKSNIDQRGY---DGRNALRVAALEGHRDIVELLFSHGADVNCKDADGRPTLYILALE 956
Query: 138 RELYVDDSPLE--LMVRALDAEGNT 160
+L + + LE V A DAEG T
Sbjct: 957 NQLTMAEYFLENGANVEASDAEGRT 981
>gi|116534898 desmoglein 2 preproprotein [Homo sapiens]
Length = 1118
Score = 31.2 bits (69), Expect = 9.2
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 1122 TVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAAT 1181
TV + G+VT K V A V I VN++ V +++V +V+ V +
Sbjct: 238 TVEARDGNGEVTDKPVKQAQVQIRILDVNDNIPVV----ENKVLEGMVEENQVNVEVTRI 293
Query: 1182 RLITATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEH 1241
++ A ++ G + F+F++ N G FH + +V EV +
Sbjct: 294 KVFDADEI-----GSDNWLANFTFASGNEGGYFHIETDAQTNEGIVTLIKEVDYEEMKNL 348
Query: 1242 NFAMVVHTKAAGRTSIK 1258
+F+++V KAA SI+
Sbjct: 349 DFSVIVANKAAFHKSIR 365
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,814,921
Number of Sequences: 37866
Number of extensions: 2696424
Number of successful extensions: 5934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5908
Number of HSP's gapped (non-prelim): 15
length of query: 1736
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1620
effective length of database: 13,855,062
effective search space: 22445200440
effective search space used: 22445200440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.