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Search of human proteins with 226371613
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226371613 sex hormone-binding globulin isoform 4 precursor
[Homo sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226371613 sex hormone-binding globulin isoform 4 precursor [H... 593 e-170
gi|226371777 sex hormone-binding globulin isoform 3 precursor [H... 487 e-138
gi|7382460 sex hormone-binding globulin isoform 1 precursor [Hom... 487 e-138
gi|226371775 sex hormone-binding globulin isoform 2 precursor [H... 438 e-123
gi|221316735 growth arrest-specific 6 isoform 2 [Homo sapiens] 88 8e-18
gi|4557617 growth arrest-specific 6 isoform 1 precursor [Homo sa... 88 8e-18
gi|221316738 growth arrest-specific 6 isoform 3 [Homo sapiens] 85 6e-17
gi|192447438 protein S, alpha preproprotein [Homo sapiens] 80 3e-15
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 53 3e-07
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 48 9e-06
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 48 9e-06
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 47 1e-05
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 47 1e-05
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 47 1e-05
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2... 47 3e-05
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1... 47 3e-05
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens] 47 3e-05
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap... 45 6e-05
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap... 45 6e-05
gi|21264602 laminin alpha 5 [Homo sapiens] 44 2e-04
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 43 4e-04
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 43 4e-04
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 43 4e-04
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 43 4e-04
gi|54873613 agrin [Homo sapiens] 42 5e-04
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 42 5e-04
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 42 5e-04
gi|18640734 contactin associated protein-like 5 [Homo sapiens] 40 0.002
gi|33469935 EGF-like, fibronectin type III and laminin G domains... 39 0.007
gi|33469931 EGF-like, fibronectin type III and laminin G domains... 39 0.007
>gi|226371613 sex hormone-binding globulin isoform 4 precursor [Homo
sapiens]
Length = 287
Score = 593 bits (1529), Expect = e-170
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT
Sbjct: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
Query: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA
Sbjct: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
Query: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS
Sbjct: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
Query: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLRGE 240
NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLRGE
Sbjct: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLRGE 240
Query: 241 DSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH 287
DSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH
Sbjct: 241 DSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH 287
>gi|226371777 sex hormone-binding globulin isoform 3 precursor [Homo
sapiens]
Length = 293
Score = 487 bits (1254), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT
Sbjct: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
Query: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA
Sbjct: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
Query: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS
Sbjct: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
Query: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR 238
NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR
Sbjct: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR 238
>gi|7382460 sex hormone-binding globulin isoform 1 precursor [Homo
sapiens]
Length = 402
Score = 487 bits (1254), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT
Sbjct: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
Query: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA
Sbjct: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
Query: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS
Sbjct: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
Query: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR 238
NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR
Sbjct: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR 238
Score = 111 bits (277), Expect = 8e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Query: 237 LRGEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH 287
L GEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH
Sbjct: 352 LPGEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH 402
>gi|226371775 sex hormone-binding globulin isoform 2 precursor [Homo
sapiens]
Length = 384
Score = 438 bits (1126), Expect = e-123
Identities = 220/238 (92%), Positives = 220/238 (92%), Gaps = 18/238 (7%)
Query: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT
Sbjct: 1 MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMT 60
Query: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA
Sbjct: 61 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 120
Query: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS
Sbjct: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPAS 180
Query: 181 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR 238
NLRLP AEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR
Sbjct: 181 NLRLP------------------AEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLR 220
Score = 111 bits (277), Expect = 8e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Query: 237 LRGEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH 287
L GEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH
Sbjct: 334 LPGEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH 384
>gi|221316735 growth arrest-specific 6 isoform 2 [Homo sapiens]
Length = 405
Score = 88.2 bits (217), Expect = 8e-18
Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 5/210 (2%)
Query: 32 PVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNP 91
P +P A +++L P+ + F + T+ + F+ RT+DPEG++ + +
Sbjct: 9 PCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQ 68
Query: 92 KDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVL 151
W +L LR GR E+QL + +GP ++ G W + V+ +++++V+ + V+
Sbjct: 69 DSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVM 128
Query: 152 RLRQVSGPLTSKRHPI--MRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD-KQAEISA 208
++ V+G L + + + +GG+ F +L P+ P LDGC+R +WL+ + I
Sbjct: 129 KI-AVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 187
Query: 209 SAPTSLR-SCDVESNPGIFLPPGTQAEFNL 237
+ + R C + G F P A ++L
Sbjct: 188 TVKVNTRMQCFSVTERGSFYPGSGFAFYSL 217
>gi|4557617 growth arrest-specific 6 isoform 1 precursor [Homo
sapiens]
Length = 678
Score = 88.2 bits (217), Expect = 8e-18
Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 5/210 (2%)
Query: 32 PVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNP 91
P +P A +++L P+ + F + T+ + F+ RT+DPEG++ + +
Sbjct: 282 PCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQ 341
Query: 92 KDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVL 151
W +L LR GR E+QL + +GP ++ G W + V+ +++++V+ + V+
Sbjct: 342 DSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVM 401
Query: 152 RLRQVSGPLTSKRHPI--MRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD-KQAEISA 208
++ V+G L + + + +GG+ F +L P+ P LDGC+R +WL+ + I
Sbjct: 402 KI-AVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 460
Query: 209 SAPTSLR-SCDVESNPGIFLPPGTQAEFNL 237
+ + R C + G F P A ++L
Sbjct: 461 TVKVNTRMQCFSVTERGSFYPGSGFAFYSL 490
>gi|221316738 growth arrest-specific 6 isoform 3 [Homo sapiens]
Length = 379
Score = 85.1 bits (209), Expect = 6e-17
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 55 PIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWA 114
P+ + F + T+ + F+ RT+DPEG++ + + W +L LR GR E+QL +
Sbjct: 6 PVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGV 65
Query: 115 QLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPI--MRIAL 172
+GP ++ G W + V+ +++++V+ + V+++ V+G L + + + +
Sbjct: 66 GRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKI-AVAGDLFQPERGLYHLNLTV 124
Query: 173 GGLLFPASNLRLPLVPALDGCLRRDSWLD-KQAEISASAPTSLR-SCDVESNPGIFLPPG 230
GG+ F +L P+ P LDGC+R +WL+ + I + + R C + G F P
Sbjct: 125 GGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGS 184
Query: 231 TQAEFNL 237
A ++L
Sbjct: 185 GFAFYSL 191
>gi|192447438 protein S, alpha preproprotein [Homo sapiens]
Length = 676
Score = 79.7 bits (195), Expect = 3e-15
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 12/190 (6%)
Query: 56 IAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN-HWA 114
+ + F L +I++ S+ F+ RT+D EGVI Y ++ W ++ LR G+ E+QL N H +
Sbjct: 310 VLYLKFRLPEISRFSAEFDFRTYDSEGVILYAESIDHSAWLLIALRGGKIEVQLKNEHTS 369
Query: 115 QLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGG 174
++T G G +++G W+ V V+ S+ +++ E V+ + + GPL + ++ +
Sbjct: 370 KITTG-GDVINNGLWNMVSVEELEHSISIKIAKEAVMDINK-PGPLFKPENGLLETKVYF 427
Query: 175 LLFP---ASNLRLPLVPALDGCLRRDSW-LDKQAEISAS---APTSLRSCDVESNPGIFL 227
FP S L P+ P LDGC+R SW L KQ + C V G +
Sbjct: 428 AGFPRKVESELIKPINPRLDGCIR--SWNLMKQGASGIKEIIQEKQNKHCLVTVEKGSYY 485
Query: 228 PPGTQAEFNL 237
P A+F++
Sbjct: 486 PGSGIAQFHI 495
Score = 29.3 bits (64), Expect = 4.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 255 GQRLDVDQALNRSHEIWTHSCP 276
G +LD+D+A+++ ++I HSCP
Sbjct: 646 GVQLDLDEAISKHNDIRAHSCP 667
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo
sapiens]
Length = 1331
Score = 53.1 bits (126), Expect = 3e-07
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 70 SSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLH---NHWAQLTVGAGPRLDD 126
S SF+ RTW+P G++ + + L + + + ++ +Q+ + +G L+D
Sbjct: 396 SVSFQFRTWNPNGLLVFSHFADNLGNVEIDLTESKVGVHINITQTKMSQIDISSGSGLND 455
Query: 127 GRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASN-LRLP 185
G+WH+V + + +L +DG+E +R + PL K + GG L +N
Sbjct: 456 GQWHEVRFLAKENFAILTIDGDEASAVR-TNSPLQVKTGE--KYFFGGFLNQMNNSSHSV 512
Query: 186 LVPALDGCLRR---DSWLDKQAEISASAPTSLRSCDVE 220
L P+ GC++ D L E++ P S + ++
Sbjct: 513 LQPSFQGCMQLIQVDDQLVNLYEVAQRKPGSFANVSID 550
Score = 37.7 bits (86), Expect = 0.012
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 65 KITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQL-------T 117
K K + +T + EGVI +G+ + D+ L L+ + + L+ QL +
Sbjct: 206 KTLKDVIALNFKTSESEGVILHGE-GQQGDYITLELKKAKLVLSLNLGSNQLGPIYGHTS 264
Query: 118 VGAGPRLDDGRWHQVEVKMEGDSVLLEVD 146
V G LDD WH V ++ +G S+ L +D
Sbjct: 265 VMTGSLLDDHHWHSVVIERQGRSINLTLD 293
Score = 28.9 bits (63), Expect = 5.4
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 67 TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRP---EIQLHNHWAQLTVGAGPR 123
T SF +T P GV + K+D+ L L+ + N ++ V +
Sbjct: 819 TSADISFYFKTLTPWGVFL--ENMGKEDFIKLELKSATEVSFSFDVGNGPVEIVVRSPTP 876
Query: 124 LDDGRWHQVEVKMEGDSVLLEVD 146
L+D +WH+V + L+VD
Sbjct: 877 LNDDQWHRVTAERNVKQASLQVD 899
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 48.1 bits (113), Expect = 9e-06
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 10/181 (5%)
Query: 38 SAHDPPAVHLSN---GPGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTNPKD 93
+A PA+ + + G + + FD TK+ + + EVRT G++FY
Sbjct: 2748 AAESEPALLIGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHA 2807
Query: 94 DWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRL 153
D+ + LR+G P +++DG+WH++++ +L VDG
Sbjct: 2808 DFATVQLRNGLPYFSYDLGSGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGAS---N 2864
Query: 154 RQVSGPLTSKRHPIMRIALGGLLFPASNLRL-PLVPALDGCLRRDSWLDKQAEISASAPT 212
R +S + + +GGL + R+ P+ ++DGC+R + A++ PT
Sbjct: 2865 RTISPKKADILDVVGMLYVGGLPINYTTRRIGPVTYSIDGCVRNLHMAEAPADL--EQPT 2922
Query: 213 S 213
S
Sbjct: 2923 S 2923
Score = 32.3 bits (72), Expect = 0.49
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 73 FEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTV----GAGPRLDDGR 128
FE RT GV+ G ++ K D + + D + + N + T G L DG+
Sbjct: 2962 FEFRTTTTTGVLL-GISSQKMDGMGIEMIDEKLMFHVDNGAGRFTAVYDAGVPGHLCDGQ 3020
Query: 129 WHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVP 188
WH+V + L VDG +V Q P ++ + +GG L
Sbjct: 3021 WHKVTANKIKHRIELTVDGNQV--EAQSPNPASTSADTNDPVFVGGFPDDLKQFGLTTSI 3078
Query: 189 ALDGCLR 195
GC+R
Sbjct: 3079 PFRGCIR 3085
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 48.1 bits (113), Expect = 9e-06
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 10/181 (5%)
Query: 38 SAHDPPAVHLSN---GPGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTNPKD 93
+A PA+ + + G + + FD TK+ + + EVRT G++FY
Sbjct: 2752 AAESEPALLIGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHA 2811
Query: 94 DWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRL 153
D+ + LR+G P +++DG+WH++++ +L VDG
Sbjct: 2812 DFATVQLRNGLPYFSYDLGSGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGAS---N 2868
Query: 154 RQVSGPLTSKRHPIMRIALGGLLFPASNLRL-PLVPALDGCLRRDSWLDKQAEISASAPT 212
R +S + + +GGL + R+ P+ ++DGC+R + A++ PT
Sbjct: 2869 RTISPKKADILDVVGMLYVGGLPINYTTRRIGPVTYSIDGCVRNLHMAEAPADL--EQPT 2926
Query: 213 S 213
S
Sbjct: 2927 S 2927
Score = 32.3 bits (72), Expect = 0.49
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 73 FEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTV----GAGPRLDDGR 128
FE RT GV+ G ++ K D + + D + + N + T G L DG+
Sbjct: 2966 FEFRTTTTTGVLL-GISSQKMDGMGIEMIDEKLMFHVDNGAGRFTAVYDAGVPGHLCDGQ 3024
Query: 129 WHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVP 188
WH+V + L VDG +V Q P ++ + +GG L
Sbjct: 3025 WHKVTANKIKHRIELTVDGNQV--EAQSPNPASTSADTNDPVFVGGFPDDLKQFGLTTSI 3082
Query: 189 ALDGCLR 195
GC+R
Sbjct: 3083 PFRGCIR 3089
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 47.4 bits (111), Expect = 1e-05
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPR--LD 125
K +FEVR G + +G + ++ + +++G+ ++++N + P+ L
Sbjct: 1662 KFEIAFEVRPRSSSGTLVHGHS-VNGEYLNVHMKNGQVIVKVNNGIRDFSTSVTPKQSLC 1720
Query: 126 DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSK----RHPIMRIALGGLLFPASN 181
DGRWH++ V + + V L+VD E + V GPL K R P+ +GG+ P S
Sbjct: 1721 DGRWHRITVIRDSNVVQLDVDSE----VNHVVGPLNPKPIDHREPVF---VGGV--PESL 1771
Query: 182 LRLPLVPA--LDGCLR 195
L L P+ GC+R
Sbjct: 1772 LTPRLAPSKPFTGCIR 1787
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDG 127
K+ S +RT G+IFY ++D+ L L GR + +L + + + +DG
Sbjct: 1485 KSQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDG 1544
Query: 128 RWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIM-RIALGGLL--FPASNLRL 184
WH V E S L +DG LR+ + S P T I I LGG+ N+++
Sbjct: 1545 LWHDVIFIRERSSGRLVIDG---LRVLEESLPPTEATWKIKGPIYLGGVAPGKAVKNVQI 1601
Query: 185 PLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 217
+ + GCL + L+ + SAS S+ C
Sbjct: 1602 NSIYSFSGCL-SNLQLNGASITSASQTFSVTPC 1633
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 47.4 bits (111), Expect = 1e-05
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPR--LD 125
K +FEVR G + +G + ++ + +++G+ ++++N + P+ L
Sbjct: 1669 KFEIAFEVRPRSSSGTLVHGHS-VNGEYLNVHMKNGQVIVKVNNGIRDFSTSVTPKQSLC 1727
Query: 126 DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSK----RHPIMRIALGGLLFPASN 181
DGRWH++ V + + V L+VD E + V GPL K R P+ +GG+ P S
Sbjct: 1728 DGRWHRITVIRDSNVVQLDVDSE----VNHVVGPLNPKPIDHREPVF---VGGV--PESL 1778
Query: 182 LRLPLVPA--LDGCLR 195
L L P+ GC+R
Sbjct: 1779 LTPRLAPSKPFTGCIR 1794
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDG 127
K+ S +RT G+IFY ++D+ L L GR + +L + + + +DG
Sbjct: 1492 KSQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDG 1551
Query: 128 RWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIM-RIALGGLL--FPASNLRL 184
WH V E S L +DG LR+ + S P T I I LGG+ N+++
Sbjct: 1552 LWHDVIFIRERSSGRLVIDG---LRVLEESLPPTEATWKIKGPIYLGGVAPGKAVKNVQI 1608
Query: 185 PLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 217
+ + GCL + L+ + SAS S+ C
Sbjct: 1609 NSIYSFSGCL-SNLQLNGASITSASQTFSVTPC 1640
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 47.4 bits (111), Expect = 1e-05
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPR--LD 125
K +FEVR G + +G + ++ + +++G+ ++++N + P+ L
Sbjct: 1662 KFEIAFEVRPRSSSGTLVHGHS-VNGEYLNVHMKNGQVIVKVNNGIRDFSTSVTPKQSLC 1720
Query: 126 DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSK----RHPIMRIALGGLLFPASN 181
DGRWH++ V + + V L+VD E + V GPL K R P+ +GG+ P S
Sbjct: 1721 DGRWHRITVIRDSNVVQLDVDSE----VNHVVGPLNPKPIDHREPVF---VGGV--PESL 1771
Query: 182 LRLPLVPA--LDGCLR 195
L L P+ GC+R
Sbjct: 1772 LTPRLAPSKPFTGCIR 1787
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDG 127
K+ S +RT G+IFY ++D+ L L GR + +L + + + +DG
Sbjct: 1485 KSQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDG 1544
Query: 128 RWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIM-RIALGGLL--FPASNLRL 184
WH V E S L +DG LR+ + S P T I I LGG+ N+++
Sbjct: 1545 LWHDVIFIRERSSGRLVIDG---LRVLEESLPPTEATWKIKGPIYLGGVAPGKAVKNVQI 1601
Query: 185 PLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 217
+ + GCL + L+ + SAS S+ C
Sbjct: 1602 NSIYSFSGCL-SNLQLNGASITSASQTFSVTPC 1633
>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
[Homo sapiens]
Length = 1207
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN-HWAQLTVGAGPRLDD 126
K S +F+ RTW+ G + +G+ F+L L+DG+ ++ L + V AG L+D
Sbjct: 391 KVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAGLND 450
Query: 127 GRWHQVEVKMEGDSVLLEVDGEEVLR 152
G+WH V + + + VD + ++
Sbjct: 451 GQWHSVSFSAKWSHMNVVVDDDTAVQ 476
>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
[Homo sapiens]
Length = 1288
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN-HWAQLTVGAGPRLDD 126
K S +F+ RTW+ G + +G+ F+L L+DG+ ++ L + V AG L+D
Sbjct: 391 KVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAGLND 450
Query: 127 GRWHQVEVKMEGDSVLLEVDGEEVLR 152
G+WH V + + + VD + ++
Sbjct: 451 GQWHSVSFSAKWSHMNVVVDDDTAVQ 476
>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
Length = 1288
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 68 KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN-HWAQLTVGAGPRLDD 126
K S +F+ RTW+ G + +G+ F+L L+DG+ ++ L + V AG L+D
Sbjct: 391 KVSVTFQFRTWNRAGHLLFGELRRGSGSFVLFLKDGKLKLSLFQPGQSPRNVTAGAGLND 450
Query: 127 GRWHQVEVKMEGDSVLLEVDGEEVLR 152
G+WH V + + + VD + ++
Sbjct: 451 GQWHSVSFSAKWSHMNVVVDDDTAVQ 476
>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo
sapiens]
Length = 1235
Score = 45.4 bits (106), Expect = 6e-05
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 62 DLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLT-VGA 120
D + + S++F+ RTW+ G++ + + +L L DG+ + L+ + + A
Sbjct: 312 DFSGEEEVSATFQFRTWNKAGLLLFSELQLISGGILLFLSDGKLKSNLYQPGKLPSDITA 371
Query: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGE 148
G L+DG+WH V + + + + + VDG+
Sbjct: 372 GVELNDGQWHSVSLSAKKNHLSVAVDGQ 399
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 72 SFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQL-------TVGAGPRL 124
S + +T +G++ + + P D L LR R + +++ A+L + G L
Sbjct: 184 SLKFKTMQSDGILLHRE-GPNGDHITLQLRRARLFLLINSGEAKLPSTSTLVNLTLGSLL 242
Query: 125 DDGRWHQVEVKMEGDSVLLEVD 146
DD WH V ++ G V VD
Sbjct: 243 DDQHWHSVLIQRLGKQVNFTVD 264
>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo
sapiens]
Length = 1308
Score = 45.4 bits (106), Expect = 6e-05
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 62 DLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLT-VGA 120
D + + S++F+ RTW+ G++ + + +L L DG+ + L+ + + A
Sbjct: 385 DFSGEEEVSATFQFRTWNKAGLLLFSELQLISGGILLFLSDGKLKSNLYQPGKLPSDITA 444
Query: 121 GPRLDDGRWHQVEVKMEGDSVLLEVDGE 148
G L+DG+WH V + + + + + VDG+
Sbjct: 445 GVELNDGQWHSVSLSAKKNHLSVAVDGQ 472
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 72 SFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQL-------TVGAGPRL 124
S + +T +G++ + + P D L LR R + +++ A+L + G L
Sbjct: 209 SLKFKTMQSDGILLHRE-GPNGDHITLQLRRARLFLLINSGEAKLPSTSTLVNLTLGSLL 267
Query: 125 DDGRWHQVEVKMEGDSVLLEVD 146
DD WH V ++ G V VD
Sbjct: 268 DDQHWHSVLIQRLGKQVNFTVD 289
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 96 FMLGLRDGRPEIQL---HNHWAQLTVGAGPRLD--------DGRWHQVEVKMEGDSVLLE 144
F LR G P + L + H+ G G RL GRWH+V V+ E + +LL
Sbjct: 3381 FTARLRPGSPSLALFLSNGHFVAQMEGLGTRLRAQSRQRSRPGRWHKVSVRWEKNRILLV 3440
Query: 145 VDGEEVLRLRQVSGPLTSKRHPIMR-IALGGLLFPASNLRLPLVPALDGCLRR 196
DG HP + +GGL + + +LP+ GC++R
Sbjct: 3441 TDGARAWSQEGPHRQHQGAEHPQPHTLFVGGLPASSHSSKLPVTVGFSGCVKR 3493
Score = 35.4 bits (80), Expect = 0.058
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 124 LDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGP-LTSKRHPIMRIALGGLLFPASNL 182
L DG+WH++ V G+ + LEVD + GP L + + LGGL P
Sbjct: 3600 LCDGQWHRLAVMKSGNVLRLEVDAQS----NHTVGPLLAAAAGAPAPLYLGGL--PEPMA 3653
Query: 183 RLPLVPALDGCLRR 196
P PA GC+RR
Sbjct: 3654 VQPWPPAYCGCMRR 3667
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 42.7 bits (99), Expect = 4e-04
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 31 RPVLPTQSAHDP-PAVHLSNGP---GQEPIAVMTFDLTK-ITKTSSSFEV--RTWDPEGV 83
R V Q A P P ++G G P + + F L + + K S F V +T G+
Sbjct: 2965 RSVKVWQDACSPLPKTQANHGALQFGDIPTSHLLFKLPQELLKPRSQFAVDMQTTSSRGL 3024
Query: 84 IFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLL 143
+F+ T K+ + L L GR L +L + + + +DG+WH V +G+ L
Sbjct: 3025 VFH--TGTKNSFMALYLSKGRLVFALGTDGKKLRIKSKEKCNDGKWHTVVFGHDGEKGRL 3082
Query: 144 EVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQ 203
VDG LR R+ S P S + LG P+ + + GCL ++ LD +
Sbjct: 3083 VVDG---LRAREGSLPGNSTISIRAPVYLGSP--PSGKPKSLPTNSFVGCL-KNFQLDSK 3136
Query: 204 AEISASAPTSLRSC 217
+ S+ + SC
Sbjct: 3137 PLYTPSSSFGVSSC 3150
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 124 LDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLR 183
L DG+WH V V ++ + LE+D + Q+ P S + P + LGG + LR
Sbjct: 3236 LCDGQWHSVAVTIKQHILHLELDTDSSYTAGQIPFPPASTQEP---LHLGGAPANLTTLR 3292
Query: 184 LPLVPALDGCLR 195
+P+ + GCLR
Sbjct: 3293 IPVWKSFFGCLR 3304
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 42.7 bits (99), Expect = 4e-04
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 31 RPVLPTQSAHDP-PAVHLSNGP---GQEPIAVMTFDLTK-ITKTSSSFEV--RTWDPEGV 83
R V Q A P P ++G G P + + F L + + K S F V +T G+
Sbjct: 1300 RSVKVWQDACSPLPKTQANHGALQFGDIPTSHLLFKLPQELLKPRSQFAVDMQTTSSRGL 1359
Query: 84 IFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLL 143
+F+ T K+ + L L GR L +L + + + +DG+WH V +G+ L
Sbjct: 1360 VFH--TGTKNSFMALYLSKGRLVFALGTDGKKLRIKSKEKCNDGKWHTVVFGHDGEKGRL 1417
Query: 144 EVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQ 203
VDG LR R+ S P S + LG P+ + + GCL ++ LD +
Sbjct: 1418 VVDG---LRAREGSLPGNSTISIRAPVYLGSP--PSGKPKSLPTNSFVGCL-KNFQLDSK 1471
Query: 204 AEISASAPTSLRSC 217
+ S+ + SC
Sbjct: 1472 PLYTPSSSFGVSSC 1485
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 124 LDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLR 183
L DG+WH V V ++ + LE+D + Q+ P S + P + LGG + LR
Sbjct: 1571 LCDGQWHSVAVTIKQHILHLELDTDSSYTAGQIPFPPASTQEP---LHLGGAPANLTTLR 1627
Query: 184 LPLVPALDGCLR 195
+P+ + GCLR
Sbjct: 1628 IPVWKSFFGCLR 1639
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 42.7 bits (99), Expect = 4e-04
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 31 RPVLPTQSAHDP-PAVHLSNGP---GQEPIAVMTFDLTK-ITKTSSSFEV--RTWDPEGV 83
R V Q A P P ++G G P + + F L + + K S F V +T G+
Sbjct: 2909 RSVKVWQDACSPLPKTQANHGALQFGDIPTSHLLFKLPQELLKPRSQFAVDMQTTSSRGL 2968
Query: 84 IFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLL 143
+F+ T K+ + L L GR L +L + + + +DG+WH V +G+ L
Sbjct: 2969 VFH--TGTKNSFMALYLSKGRLVFALGTDGKKLRIKSKEKCNDGKWHTVVFGHDGEKGRL 3026
Query: 144 EVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQ 203
VDG LR R+ S P S + LG P+ + + GCL ++ LD +
Sbjct: 3027 VVDG---LRAREGSLPGNSTISIRAPVYLGSP--PSGKPKSLPTNSFVGCL-KNFQLDSK 3080
Query: 204 AEISASAPTSLRSC 217
+ S+ + SC
Sbjct: 3081 PLYTPSSSFGVSSC 3094
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 124 LDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLR 183
L DG+WH V V ++ + LE+D + Q+ P S + P + LGG + LR
Sbjct: 3180 LCDGQWHSVAVTIKQHILHLELDTDSSYTAGQIPFPPASTQEP---LHLGGAPANLTTLR 3236
Query: 184 LPLVPALDGCLR 195
+P+ + GCLR
Sbjct: 3237 IPVWKSFFGCLR 3248
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 42.7 bits (99), Expect = 4e-04
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 31 RPVLPTQSAHDP-PAVHLSNGP---GQEPIAVMTFDLTK-ITKTSSSFEV--RTWDPEGV 83
R V Q A P P ++G G P + + F L + + K S F V +T G+
Sbjct: 1356 RSVKVWQDACSPLPKTQANHGALQFGDIPTSHLLFKLPQELLKPRSQFAVDMQTTSSRGL 1415
Query: 84 IFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLL 143
+F+ T K+ + L L GR L +L + + + +DG+WH V +G+ L
Sbjct: 1416 VFH--TGTKNSFMALYLSKGRLVFALGTDGKKLRIKSKEKCNDGKWHTVVFGHDGEKGRL 1473
Query: 144 EVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQ 203
VDG LR R+ S P S + LG P+ + + GCL ++ LD +
Sbjct: 1474 VVDG---LRAREGSLPGNSTISIRAPVYLGSP--PSGKPKSLPTNSFVGCL-KNFQLDSK 1527
Query: 204 AEISASAPTSLRSC 217
+ S+ + SC
Sbjct: 1528 PLYTPSSSFGVSSC 1541
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 124 LDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLR 183
L DG+WH V V ++ + LE+D + Q+ P S + P + LGG + LR
Sbjct: 1627 LCDGQWHSVAVTIKQHILHLELDTDSSYTAGQIPFPPASTQEP---LHLGGAPANLTTLR 1683
Query: 184 LPLVPALDGCLR 195
+P+ + GCLR
Sbjct: 1684 IPVWKSFFGCLR 1695
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 42.4 bits (98), Expect = 5e-04
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 72 SFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQ 131
+ E R +P+G++ Y D+ L L DGR +++ + + ++ G+WH+
Sbjct: 1397 ALEFRALEPQGLLLYNGNARGKDFLALALLDGRVQLRFDTGSGPAVLTSAVPVEPGQWHR 1456
Query: 132 VEVKMEGDSVLLEVDGE 148
+E+ L VDGE
Sbjct: 1457 LELSRHWRRGTLSVDGE 1473
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 42.4 bits (98), Expect = 5e-04
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 55 PIAVMTFDLTKITKTSSSFEVRTWDPEGVIFY-----GDTNPKDDWFMLGLRDGRPEIQL 109
P V + L ++ +T EVRT G++ + G+ D+ LGL+DG +
Sbjct: 4215 PGHVFSRSLPEVPETIE-LEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRY 4273
Query: 110 HNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVL 151
+ + + ++DG WH+V EG ++VDGEE++
Sbjct: 4274 QLGSGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELV 4315
Score = 30.8 bits (68), Expect = 1.4
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 74 EVRTWDPEGVIFY--GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQ 131
E + P+GV+ + G + P +D+ L + G E + + + L GRWH+
Sbjct: 3956 EFKPLAPDGVLLFSGGKSGPVEDFVSLAMVGGHLEFRYELGSGLAVLRSAEPLALGRWHR 4015
Query: 132 VEV-KMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPAL 190
V ++ D L G VLR S P S+ + + G + P+ +PL PA
Sbjct: 4016 VSAERLNKDGSLRVNGGRPVLR----SSPGKSQGLNLHTLLYLGGVEPS----VPLSPAT 4067
Query: 191 D------GCLRRDSWLDKQAEISAS 209
+ GC+ S K+ +++ S
Sbjct: 4068 NMSAHFRGCVGEVSVNGKRLDLTYS 4092
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 42.4 bits (98), Expect = 5e-04
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 72 SFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQL-HNHWAQLTVGAGPRLDDGRWH 130
SF RTWD G++ + L L +G+ + + + +L AG RL+DG WH
Sbjct: 386 SFRFRTWDLTGLLLFSRLGDGLGHVELTLSEGQVNVSIAQSGRKKLQFAAGYRLNDGFWH 445
Query: 131 QVEVKMEGDSVLLEVDGEEVLRLRQVSGPL 160
+V + + ++ +D E +R VS PL
Sbjct: 446 EVNFVAQENHAVISIDDVEGAEVR-VSYPL 474
Score = 28.1 bits (61), Expect = 9.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 117 TVGAGPRLDDGRWHQVEVKMEGDSVLLEVDG 147
TV AG L+D WH V V G V +DG
Sbjct: 251 TVSAGGVLNDQHWHYVRVDRFGRDVNFTLDG 281
>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
Length = 1306
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 65 KITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLT-VGAGPR 123
+I S SF+ RTW+ +G++ + + +L L G + + ++ + G
Sbjct: 385 QIDGLSVSFQFRTWNKDGLLLSTELSEGSGTLLLSLEGGILRLVIQKMTERVAEILTGSN 444
Query: 124 LDDGRWHQVEVKMEGDSVLLEVDGE 148
L+DG WH V + + + L +D E
Sbjct: 445 LNDGLWHSVSINARRNRITLTLDDE 469
Score = 33.1 bits (74), Expect = 0.29
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 63 LTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA-- 120
L K S + ++ +GV+F+G+ + D L L+ GR + L+ ++ + +
Sbjct: 197 LMSTLKDVISLKFKSMQGDGVLFHGE-GQRGDHITLELQKGRLALHLNLGDSKARLSSSL 255
Query: 121 -----GPRLDDGRWHQVEVKMEGDSVLLEVD 146
G LDD WH V ++ G V VD
Sbjct: 256 PSATLGSLLDDQHWHSVLIERVGKQVNFTVD 286
>gi|33469935 EGF-like, fibronectin type III and laminin G domains
isoform 3 [Homo sapiens]
Length = 375
Score = 38.5 bits (88), Expect = 0.007
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 59 MTFDLTKITKTSSS------FEVRTWDPEGVIFY-GDT--NPKDDWFMLGLRDGRPEIQL 109
+T+D I K S +T +G++ + GD+ P D+ LGLRDG
Sbjct: 204 LTYDNPDILKRVSGSRSNVFMRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSY 263
Query: 110 HNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVD 146
+ ++ +DGRWH+V+ +G S + VD
Sbjct: 264 NLGSGVASIMVNGSFNDGRWHRVKAVRDGQSGKITVD 300
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 81 EGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDS 140
+GV+ Y D+ + L G E + + + L G WH++ V +
Sbjct: 13 DGVLLYSYDTGSKDFLSINLAGGHVEFRFDCGSGTGVLRSEDPLTLGNWHELRVSRTAKN 72
Query: 141 VLLEVDGEEVL 151
+L+VD ++++
Sbjct: 73 GILQVDKQKIV 83
>gi|33469931 EGF-like, fibronectin type III and laminin G domains
isoform 2 [Homo sapiens]
Length = 775
Score = 38.5 bits (88), Expect = 0.007
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 59 MTFDLTKITKTSSS------FEVRTWDPEGVIFY-GDT--NPKDDWFMLGLRDGRPEIQL 109
+T+D I K S +T +G++ + GD+ P D+ LGLRDG
Sbjct: 604 LTYDNPDILKRVSGSRSNVFMRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSY 663
Query: 110 HNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVD 146
+ ++ +DGRWH+V+ +G S + VD
Sbjct: 664 NLGSGVASIMVNGSFNDGRWHRVKAVRDGQSGKITVD 700
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 81 EGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDS 140
+GV+ Y D+ + L G E + + + L G WH++ V +
Sbjct: 413 DGVLLYSYDTGSKDFLSINLAGGHVEFRFDCGSGTGVLRSEDPLTLGNWHELRVSRTAKN 472
Query: 141 VLLEVDGEEVL 151
+L+VD ++++
Sbjct: 473 GILQVDKQKIV 483
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,767,475
Number of Sequences: 37866
Number of extensions: 604573
Number of successful extensions: 1550
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1380
Number of HSP's gapped (non-prelim): 166
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.