Search of human proteins with 224593271

Search of human proteins with 224593271

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224593271 intermediate filament tail domain containing 1
isoform 3 [Homo sapiens]
         (325 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224593271 intermediate filament tail domain containing 1 isof...   667   0.0  
gi|224593273 intermediate filament tail domain containing 1 isof...   631   0.0  
gi|224593268 intermediate filament tail domain containing 1 isof...   631   0.0  
gi|224593275 intermediate filament tail domain containing 1 isof...   525   e-149
gi|27436951 lamin B2 [Homo sapiens]                                    75   6e-14
gi|5031875 lamin A/C isoform 2 [Homo sapiens]                          68   1e-11
gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]               68   1e-11
gi|5031877 lamin B1 [Homo sapiens]                                     65   6e-11
gi|27436948 lamin A/C isoform 3 [Homo sapiens]                         65   6e-11
gi|27734829 hypothetical protein LOC256329 [Homo sapiens]              49   8e-06
gi|218505835 membrane-associated guanylate kinase-related  3 iso...    32   0.59 
gi|155969695 membrane-associated guanylate kinase-related  3 iso...    32   0.59 
gi|111955326 MLX interacting protein [Homo sapiens]                    31   1.3  
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom...    31   1.7  
gi|190014591 vestigial like 4 isoform b [Homo sapiens]                 30   2.2  
gi|38505220 acyl-CoA synthetase medium-chain family member 5 [Ho...    29   6.5  
gi|5453830 origin recognition complex, subunit 2 [Homo sapiens]        29   6.5  
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi...    29   6.5  
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi...    28   8.5  
gi|190014593 vestigial like 4 isoform a [Homo sapiens]                 28   8.5  

>gi|224593271 intermediate filament tail domain containing 1 isoform
           3 [Homo sapiens]
          Length = 325

 Score =  667 bits (1721), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MQQPVRAGDIGVSRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYT 60
           MQQPVRAGDIGVSRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYT
Sbjct: 1   MQQPVRAGDIGVSRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYT 60

Query: 61  QKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVN 120
           QKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVN
Sbjct: 61  QKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVN 120

Query: 121 GQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPN 180
           GQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPN
Sbjct: 121 GQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPN 180

Query: 181 GQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKD 240
           GQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKD
Sbjct: 181 GQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKD 240

Query: 241 ISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQ 300
           ISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQ
Sbjct: 241 ISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQ 300

Query: 301 PRTRSTRPNRASGSKKKKTSESQKQ 325
           PRTRSTRPNRASGSKKKKTSESQKQ
Sbjct: 301 PRTRSTRPNRASGSKKKKTSESQKQ 325


>gi|224593273 intermediate filament tail domain containing 1 isoform
           1 [Homo sapiens]
          Length = 409

 Score =  631 bits (1627), Expect = 0.0
 Identities = 308/313 (98%), Positives = 310/313 (99%)

Query: 13  SRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 72
           SRV+   +ASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE
Sbjct: 97  SRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 156

Query: 73  EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 132
           EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN
Sbjct: 157 EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 216

Query: 133 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 192
           IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW
Sbjct: 217 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 276

Query: 193 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 252
           KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL
Sbjct: 277 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 336

Query: 253 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 312
           LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS
Sbjct: 337 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 396

Query: 313 GSKKKKTSESQKQ 325
           GSKKKKTSESQKQ
Sbjct: 397 GSKKKKTSESQKQ 409


>gi|224593268 intermediate filament tail domain containing 1 isoform
           2 [Homo sapiens]
          Length = 388

 Score =  631 bits (1627), Expect = 0.0
 Identities = 308/313 (98%), Positives = 310/313 (99%)

Query: 13  SRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 72
           SRV+   +ASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE
Sbjct: 76  SRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 135

Query: 73  EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 132
           EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN
Sbjct: 136 EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 195

Query: 133 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 192
           IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW
Sbjct: 196 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 255

Query: 193 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 252
           KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL
Sbjct: 256 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 315

Query: 253 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 312
           LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS
Sbjct: 316 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 375

Query: 313 GSKKKKTSESQKQ 325
           GSKKKKTSESQKQ
Sbjct: 376 GSKKKKTSESQKQ 388


>gi|224593275 intermediate filament tail domain containing 1 isoform
           4 [Homo sapiens]
          Length = 369

 Score =  525 bits (1351), Expect = e-149
 Identities = 268/313 (85%), Positives = 270/313 (86%), Gaps = 40/313 (12%)

Query: 13  SRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 72
           SRV+   +ASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE
Sbjct: 97  SRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 156

Query: 73  EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 132
           EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN
Sbjct: 157 EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 216

Query: 133 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 192
           IVMQANSTVT                                        AIAWYTPIHW
Sbjct: 217 IVMQANSTVT----------------------------------------AIAWYTPIHW 236

Query: 193 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 252
           KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL
Sbjct: 237 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 296

Query: 253 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 312
           LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS
Sbjct: 297 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 356

Query: 313 GSKKKKTSESQKQ 325
           GSKKKKTSESQKQ
Sbjct: 357 GSKKKKTSESQKQ 369


>gi|27436951 lamin B2 [Homo sapiens]
          Length = 600

 Score = 75.5 bits (184), Expect = 6e-14
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)

Query: 79  SSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGD-HILQQNVNGQTISLYRFLPNIVMQA 137
           +S+ G V I E++++G FV+L N+S DK+ ++G+  I +Q + G+ I+ Y+F P  +++A
Sbjct: 448 ASASGSVSIEEIDLEGKFVQLKNNS-DKDQSLGNWRIKRQVLEGEEIA-YKFTPKYILRA 505

Query: 138 NSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYT 188
              VTVWAA +   H PPS  +WK Q  +       T+L   +G+ +A  T
Sbjct: 506 GQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRT 556


>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
          Length = 572

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 83  GDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVT 142
           G V + EV+ +G FV+L N S +++ ++G+  +++      +  YRF P   ++A   VT
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKS-NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 496

Query: 143 VWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 185
           +WAA + A H PP+D +WK Q+ +       T L    G+ +A
Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539


>gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]
          Length = 664

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 83  GDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVT 142
           G V + EV+ +G FV+L N S +++ ++G+  +++      +  YRF P   ++A   VT
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKS-NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 496

Query: 143 VWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 185
           +WAA + A H PP+D +WK Q+ +       T L    G+ +A
Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539


>gi|5031877 lamin B1 [Homo sapiens]
          Length = 586

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 78  TSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQA 137
           ++S+ G+V I E++V G F++L N+S +++  +G   + + +   ++S Y++    V++A
Sbjct: 435 SASATGNVCIEEIDVDGKFIRLKNTS-EQDQPMGGWEMIRKIGDTSVS-YKYTSRYVLKA 492

Query: 138 NSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 185
             TVT+WAA +     PP+D +WK Q+ +    D   IL    G+ +A
Sbjct: 493 GQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVA 540


>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
          Length = 634

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 83  GDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVT 142
           G V + EV+ +G FV+L N S +++ ++G+  +++      +  YRF P   ++A   VT
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKS-NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 496

Query: 143 VWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQ 182
           +WAA + A H PP+D +WK Q+ +       T L    G+
Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGE 536


>gi|27734829 hypothetical protein LOC256329 [Homo sapiens]
          Length = 634

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 27/101 (26%), Positives = 48/101 (47%)

Query: 85  VEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVTVW 144
           ++I  V+ +  FV++ N S +    +   +L+Q V G    LYRF P  ++     VTVW
Sbjct: 362 LKIVAVSCREKFVRIFNPSQESTADLSGMVLKQLVRGFPERLYRFPPGTLLAPRHHVTVW 421

Query: 145 AAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 185
             A+ +  +P      +E     +   C T+L  P G+ ++
Sbjct: 422 GEATRSAKKPLRASSSREPVPLLSIRGCATLLLSPKGEVLS 462


>gi|218505835 membrane-associated guanylate kinase-related  3
           isoform 1 [Homo sapiens]
          Length = 1481

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 107 EMAIGDHILQQNVNGQTIS--LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQD 164
           ++ +GDHI    VNGQ+I    +  +  ++  A  TVT+   A E  H PPS       +
Sbjct: 896 KLKVGDHI--SAVNGQSIVELSHDNIVQLIKDAGVTVTLTVIAEEEHHGPPSG-----TN 948

Query: 165 KFRASPDCITILCKPNGQAIAWYTP 189
             R SP    +  +P GQ+ A + P
Sbjct: 949 SARQSP---ALQHRPMGQSQANHIP 970


>gi|155969695 membrane-associated guanylate kinase-related  3
           isoform 2 [Homo sapiens]
          Length = 1125

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 107 EMAIGDHILQQNVNGQTIS--LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQD 164
           ++ +GDHI    VNGQ+I    +  +  ++  A  TVT+   A E  H PPS       +
Sbjct: 896 KLKVGDHI--SAVNGQSIVELSHDNIVQLIKDAGVTVTLTVIAEEEHHGPPSG-----TN 948

Query: 165 KFRASPDCITILCKPNGQAIAWYTP 189
             R SP    +  +P GQ+ A + P
Sbjct: 949 SARQSP---ALQHRPMGQSQANHIP 970


>gi|111955326 MLX interacting protein [Homo sapiens]
          Length = 919

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 41  DYFLSLFGDSKKLTAHSNYTQKTLKYFSMILEEVGQ 76
           D   SL  ++ KLT+H+   QKT++Y + + +E GQ
Sbjct: 740 DMLNSLISNNSKLTSHAITLQKTVEYITKLQQERGQ 775


>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
           sapiens]
          Length = 507

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 5   VRAGDIGVSRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTL 64
           V++G+I  +++Q  H A+   +   + +   +GDG    + L G+   +  H    Q   
Sbjct: 22  VQSGNINAAKIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHP 81

Query: 65  KYFSMILEEVGQFTSSSLGDVEI-AEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQT 123
                   +      S+L  + I  +++   + + +INSS+  +       L  N+    
Sbjct: 82  TVVISAYRKALDDMISTLKKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDA 141

Query: 124 ISLYRFLPN 132
           + + +F  N
Sbjct: 142 VKMVQFEEN 150


>gi|190014591 vestigial like 4 isoform b [Homo sapiens]
          Length = 290

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 219 VFQWTASTATITKEKQDQPKKDISNYQVEQAQVLLKREKEIPPTVFPNRSPW-------- 270
           V    AS      EK++   +     Q       L   +  PP + P++  +        
Sbjct: 7   VLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDED 66

Query: 271 --CQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRP 308
             C N +VS      +  PH   TA G   R PR RS  P
Sbjct: 67  LDCDNDHVSK--MSRIFNPHLNKTANGDCRRDPRERSRSP 104


>gi|38505220 acyl-CoA synthetase medium-chain family member 5 [Homo
           sapiens]
          Length = 579

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 122 QTISLYRFL-PNIVMQANSTVTVWAAASEAKHQPPSDFLW 160
           + ISL R L P     A+  + VW+   EA H+PP+   W
Sbjct: 40  EAISLGRQLVPEYFNFAHDVLDVWSRLEEAGHRPPNPAFW 79


>gi|5453830 origin recognition complex, subunit 2 [Homo sapiens]
          Length = 577

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 54  TAHSNYTQKTLKYFSMILEEVGQFTSSSLGDV-EIAEVNVKGLFVKLINSSLDKE 107
           T +S YT++T    S+++++ G    SSL  V      N +G+F  LI   LD +
Sbjct: 449 TTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQ 503


>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
           sapiens]
          Length = 783

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 200 DADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVLLKREKEI 259
           DA +E +       T RK+         T  KEK+++PK D +    E+ + +  + K++
Sbjct: 8   DAGLESDTAMKKGETLRKQ---------TEEKEKKEKPKSDKTEEIAEEEETVFPKAKQV 58

Query: 260 PPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRASGSKKKKT 319
                P+                P  +         + D  P+T+S R  +    KK  +
Sbjct: 59  KKKAEPS----------EVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVS 108

Query: 320 SESQK 324
           S+++K
Sbjct: 109 SKTKK 113


>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 490

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 7/27 (25%)

Query: 268 SPWCQNPYVSAH-----PYCPLIEPHN 289
           SP+C  P VS H     P+CPL+ PH+
Sbjct: 4   SPYC--PVVSTHYSVVSPHCPLVPPHH 28


>gi|190014593 vestigial like 4 isoform a [Homo sapiens]
          Length = 296

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 260 PPTVFPNRSPW----------CQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRP 308
           PP + P++  +          C N +VS      +  PH   TA G   R PR RS  P
Sbjct: 54  PPPISPSKRKFSMEPGDEDLDCDNDHVSK--MSRIFNPHLNKTANGDCRRDPRERSRSP 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,874,338
Number of Sequences: 37866
Number of extensions: 577029
Number of successful extensions: 1695
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 26
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.