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Search of human proteins with 224496106
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224496106 small fragment nuclease [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224496106 small fragment nuclease [Homo sapiens] 481 e-136
gi|93352549 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo s... 36 0.025
gi|40254908 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo s... 36 0.025
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ... 33 0.22
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ... 33 0.22
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ... 33 0.22
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ... 33 0.22
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti... 33 0.22
gi|126273519 exonuclease GOR [Homo sapiens] 33 0.22
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 33 0.28
gi|38569477 metaxin 1 isoform 2 [Homo sapiens] 30 2.4
gi|209413754 synapsin III isoform IIIc [Homo sapiens] 30 2.4
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 30 2.4
gi|154091028 sorting nexin 29 [Homo sapiens] 30 2.4
gi|170650672 Leber congenital amaurosis 5 [Homo sapiens] 29 3.1
gi|170650670 Leber congenital amaurosis 5 [Homo sapiens] 29 3.1
gi|8923477 transmembrane protein 160 [Homo sapiens] 29 3.1
gi|134254455 N-acetyltransferase 15 [Homo sapiens] 28 5.3
gi|134254440 N-acetyltransferase 15 [Homo sapiens] 28 5.3
gi|13376261 N-acetyltransferase 15 [Homo sapiens] 28 5.3
gi|13376429 hypothetical protein LOC80011 [Homo sapiens] 28 5.3
gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens] 28 6.9
gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens] 28 6.9
gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens] 28 6.9
gi|6005920 thyrotropin-releasing hormone [Homo sapiens] 28 9.0
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 28 9.0
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 28 9.0
gi|4557303 aldehyde dehydrogenase 3A2 isoform 2 [Homo sapiens] 28 9.0
gi|73466520 aldehyde dehydrogenase 3A2 isoform 1 [Homo sapiens] 28 9.0
>gi|224496106 small fragment nuclease [Homo sapiens]
Length = 237
Score = 481 bits (1237), Expect = e-136
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI 60
MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI
Sbjct: 1 MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI 60
Query: 61 IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQA 120
IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQA
Sbjct: 61 IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQA 120
Query: 121 EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY 180
EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY
Sbjct: 121 EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY 180
Query: 181 PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS 237
PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS
Sbjct: 181 PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS 237
>gi|93352549 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo
sapiens]
Length = 388
Score = 36.2 bits (82), Expect = 0.025
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 87 DELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHE 146
DE+ +S K++H SG A + I +++A + LS V +QT A S E
Sbjct: 65 DEVRESFHKLAKQYHPDSGSNTADSATFIRIEKAYRKVLSHVIEQTN------ASQSKGE 118
Query: 147 DKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIK- 205
+++ ++K+ + +H HY E P + E ++ + RA + + E K
Sbjct: 119 EEEDVEKFKYKTPQHRHYLSF------EGIGFGTPTQREKHYRQFRADRAAEQVMEYQKQ 172
Query: 206 --ELQFYRNNIFKKKIDEKKRKII 227
+ Q++ +++ K I + K++ I
Sbjct: 173 KLQSQYFPDSVIVKNIRQSKQQKI 196
>gi|40254908 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo
sapiens]
Length = 388
Score = 36.2 bits (82), Expect = 0.025
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 87 DELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHE 146
DE+ +S K++H SG A + I +++A + LS V +QT A S E
Sbjct: 65 DEVRESFHKLAKQYHPDSGSNTADSATFIRIEKAYRKVLSHVIEQTN------ASQSKGE 118
Query: 147 DKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIK- 205
+++ ++K+ + +H HY E P + E ++ + RA + + E K
Sbjct: 119 EEEDVEKFKYKTPQHRHYLSF------EGIGFGTPTQREKHYRQFRADRAAEQVMEYQKQ 172
Query: 206 --ELQFYRNNIFKKKIDEKKRKII 227
+ Q++ +++ K I + K++ I
Sbjct: 173 KLQSQYFPDSVIVKNIRQSKQQKI 196
>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
sapiens]
Length = 675
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 67 ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125
+ D+D+ ++ + +K +E++D + + SG+T+A V +++ITL Q + L
Sbjct: 522 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 571
Query: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185
SF QT L G+S+ D L K +H ++D + + +P
Sbjct: 572 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 611
Query: 186 FAPKKAASHRALDDISESIKELQFYRNN 213
F K++ + A D +++ I++ Q N+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNS 639
>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
sapiens]
Length = 675
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 67 ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125
+ D+D+ ++ + +K +E++D + + SG+T+A V +++ITL Q + L
Sbjct: 522 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 571
Query: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185
SF QT L G+S+ D L K +H ++D + + +P
Sbjct: 572 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 611
Query: 186 FAPKKAASHRALDDISESIKELQFYRNN 213
F K++ + A D +++ I++ Q N+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNS 639
>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
sapiens]
Length = 675
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 67 ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125
+ D+D+ ++ + +K +E++D + + SG+T+A V +++ITL Q + L
Sbjct: 522 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 571
Query: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185
SF QT L G+S+ D L K +H ++D + + +P
Sbjct: 572 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 611
Query: 186 FAPKKAASHRALDDISESIKELQFYRNN 213
F K++ + A D +++ I++ Q N+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNS 639
>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
sapiens]
Length = 675
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 67 ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125
+ D+D+ ++ + +K +E++D + + SG+T+A V +++ITL Q + L
Sbjct: 522 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 571
Query: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185
SF QT L G+S+ D L K +H ++D + + +P
Sbjct: 572 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 611
Query: 186 FAPKKAASHRALDDISESIKELQFYRNN 213
F K++ + A D +++ I++ Q N+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNS 639
>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
[Homo sapiens]
Length = 552
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 67 ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125
+ D+D+ ++ + +K +E++D + + SG+T+A V +++ITL Q + L
Sbjct: 399 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 448
Query: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185
SF QT L G+S+ D L K +H ++D + + +P
Sbjct: 449 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 488
Query: 186 FAPKKAASHRALDDISESIKELQFYRNN 213
F K++ + A D +++ I++ Q N+
Sbjct: 489 FPYKRSLRNLAADYLAQIIQDSQDGHNS 516
>gi|126273519 exonuclease GOR [Homo sapiens]
Length = 675
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 67 ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125
+ D+D+ ++ + +K +E++D + + SG+T+A V +++ITL Q + L
Sbjct: 522 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 571
Query: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185
SF QT L G+S+ D L K +H ++D + + +P
Sbjct: 572 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 611
Query: 186 FAPKKAASHRALDDISESIKELQFYRNN 213
F K++ + A D +++ I++ Q N+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNS 639
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 32.7 bits (73), Expect = 0.28
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 78 GPNL-IIKQPDELL---DSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTP 133
GP+ I+++P LL D+ +DW K HGK K E I ++QAE+ L+ T
Sbjct: 82 GPSTPIVQRPRILLVIDDAHTDWSKYFHGK----KVNGEIEIRVEQAEFSELNLAAYVT- 136
Query: 134 PGLCPLAGNSVHEDKKFLDKYMPQFM 159
G C + V K + + P F+
Sbjct: 137 -GGCMVDMQVVRNGTKVVRSFKPDFI 161
>gi|38569477 metaxin 1 isoform 2 [Homo sapiens]
Length = 435
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 131 QTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEF 186
Q+P G P S E K + K +H ID E+ R+WY E F
Sbjct: 196 QSPSGTLPALRTSHGEVISVPHKIITHLRKEVHTFWIDTKNYVEVTRKWYAEAMPF 251
>gi|209413754 synapsin III isoform IIIc [Homo sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 2.4
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 78 GPNL-IIKQPDELL---DSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTP 133
GP+ I+++P LL D+ +DW K HGK K E I ++QAE+ L+ T
Sbjct: 82 GPSTPIVQRPRILLVIDDAHTDWSKYFHGK----KVNGEIEIRVEQAEFSELNLAAYVT- 136
Query: 134 PGLCPLAGNSVHEDKKFLDK-YMPQFM 159
G C + V K + + + P F+
Sbjct: 137 -GGCMVDMQVVRNGTKVVSRSFKPDFI 162
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 29.6 bits (65), Expect = 2.4
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 78 GPNL-IIKQPDELL---DSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTP 133
GP+ I+++P LL D+ +DW K HGK K E I ++QAE+ L+ T
Sbjct: 82 GPSTPIVQRPRILLVIDDAHTDWSKYFHGK----KVNGEIEIRVEQAEFSELNLAAYVT- 136
Query: 134 PGLCPLAGNSVHEDKKFLDK-YMPQFM 159
G C + V K + + + P F+
Sbjct: 137 -GGCMVDMQVVRNGTKVVSRSFKPDFI 162
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 161 HLHYRIIDVSTVKELCRRWYPE--EYEFAPKKAASHRALDDISESIKELQFYRNNIFKKK 218
+++ R + ++ + YP+ Y F PKKA ++ + E K+LQ Y ++ K
Sbjct: 305 NIYRRYTEFRSLHHKLQNKYPQVRAYNFPPKKAIGNKDAKFVEERRKQLQNYLRSVMNKV 364
Query: 219 I 219
I
Sbjct: 365 I 365
>gi|170650672 Leber congenital amaurosis 5 [Homo sapiens]
Length = 697
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 146 EDKKFLDKYMPQFMKHLHYRIIDVSTVKELCR-RWYPEEYEFAPKKAASHRALDDISESI 204
E ++ +K + L + +KE+ R PE + A K ++ LDD I
Sbjct: 180 EKERATEKRVKDTESELFRTKFSLQKLKEISEARHLPERDDLAKKLVSAELKLDDTERRI 239
Query: 205 KE----LQFYRNNIFKKKIDEKKRKIIENGENE 233
KE L+ N+ ++ + E+KR + EN+
Sbjct: 240 KELSKNLELSTNSFQRQLLAERKRAYEAHDENK 272
>gi|170650670 Leber congenital amaurosis 5 [Homo sapiens]
Length = 697
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 146 EDKKFLDKYMPQFMKHLHYRIIDVSTVKELCR-RWYPEEYEFAPKKAASHRALDDISESI 204
E ++ +K + L + +KE+ R PE + A K ++ LDD I
Sbjct: 180 EKERATEKRVKDTESELFRTKFSLQKLKEISEARHLPERDDLAKKLVSAELKLDDTERRI 239
Query: 205 KE----LQFYRNNIFKKKIDEKKRKIIENGENE 233
KE L+ N+ ++ + E+KR + EN+
Sbjct: 240 KELSKNLELSTNSFQRQLLAERKRAYEAHDENK 272
>gi|8923477 transmembrane protein 160 [Homo sapiens]
Length = 188
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 29 GGAAMAAGESMAQRMVW---VDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQ 85
GGAA+ AG +A ++W V L M L+++ + L+ + D AEGP+ +
Sbjct: 133 GGAAVGAGAVLAASLLWACAVGLYMGQLELDVE-------LVPEDDGTASAEGPDEAGRP 185
Query: 86 PDE 88
P E
Sbjct: 186 PPE 188
>gi|134254455 N-acetyltransferase 15 [Homo sapiens]
Length = 242
Score = 28.5 bits (62), Expect = 5.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 168 DVSTVKELCRRWYPEEY 184
D+ TVK LC W+P EY
Sbjct: 22 DIDTVKHLCGDWFPIEY 38
>gi|134254440 N-acetyltransferase 15 [Homo sapiens]
Length = 242
Score = 28.5 bits (62), Expect = 5.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 168 DVSTVKELCRRWYPEEY 184
D+ TVK LC W+P EY
Sbjct: 22 DIDTVKHLCGDWFPIEY 38
>gi|13376261 N-acetyltransferase 15 [Homo sapiens]
Length = 242
Score = 28.5 bits (62), Expect = 5.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 168 DVSTVKELCRRWYPEEY 184
D+ TVK LC W+P EY
Sbjct: 22 DIDTVKHLCGDWFPIEY 38
>gi|13376429 hypothetical protein LOC80011 [Homo sapiens]
Length = 254
Score = 28.5 bits (62), Expect = 5.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 202 ESIKELQFYRNNIFKKKIDEKKRKIIE 228
E +KEL+ YRNN+ K I ++ +K +E
Sbjct: 107 EELKELKEYRNNLKKVGISQENKKEVE 133
>gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 193 SHRALDDISESIKELQFYRNNIFKKKIDEKK 223
SH D++ +S+ Q+ R F+KKIDEKK
Sbjct: 183 SHLLQDNLPKSVSTFQYDR--FFEKKIDEKK 211
>gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 193 SHRALDDISESIKELQFYRNNIFKKKIDEKK 223
SH D++ +S+ Q+ R F+KKIDEKK
Sbjct: 183 SHLLQDNLPKSVSTFQYDR--FFEKKIDEKK 211
>gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 2015
Score = 28.1 bits (61), Expect = 6.9
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 40 AQRMVWVDLEMTGLDIEKDQIIEMACLITDSDL--NILAEGPNLI 82
A R+ W L + +D+ D +I+++C IT+ DL N LA P++I
Sbjct: 255 ALRVKWSHLRLPWVDL--DWLIDISCQITELDLSANCLATLPSVI 297
>gi|6005920 thyrotropin-releasing hormone [Homo sapiens]
Length = 242
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 178 RWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDE 221
R PE + AA H LDD ++ L F R NI + + D+
Sbjct: 23 RAQPEAAQQEAVTAAEHPGLDDFLRQVERLLFLRENIQRLQGDQ 66
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 47 DLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSG 105
D+E T L IE + +A +IT++++ L + P K P +++W E + K+G
Sbjct: 692 DIENTVLTIEPETETALAEIITETEVPALNKCPT---KYPKTKKHLVNEWLSEKNEKTG 747
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 47 DLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSG 105
D+E T L IE + +A +IT++++ L + P K P +++W E + K+G
Sbjct: 692 DIENTVLTIEPETETALAEIITETEVPALNKCPT---KYPKTKKHLVNEWLSEKNEKTG 747
>gi|4557303 aldehyde dehydrogenase 3A2 isoform 2 [Homo sapiens]
Length = 485
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 56 EKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTI 115
EKD + +A + S+ N+ ++ ++ + D +L+++ +W K + + E+ I
Sbjct: 38 EKDILTAIAADLCKSEFNVYSQEVITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYI 97
Query: 116 TLQQAEYEFL------SFVRQQTPPGLCPLAGNSV--------HEDKKFLDKYMPQFMKH 161
Q + FV P AGN+V K L K +PQ++
Sbjct: 98 QPQPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQ 157
Query: 162 LHYRIID 168
Y +I+
Sbjct: 158 DLYIVIN 164
>gi|73466520 aldehyde dehydrogenase 3A2 isoform 1 [Homo sapiens]
Length = 508
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 56 EKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTI 115
EKD + +A + S+ N+ ++ ++ + D +L+++ +W K + + E+ I
Sbjct: 38 EKDILTAIAADLCKSEFNVYSQEVITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYI 97
Query: 116 TLQQAEYEFL------SFVRQQTPPGLCPLAGNSV--------HEDKKFLDKYMPQFMKH 161
Q + FV P AGN+V K L K +PQ++
Sbjct: 98 QPQPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQ 157
Query: 162 LHYRIID 168
Y +I+
Sbjct: 158 DLYIVIN 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,152,906
Number of Sequences: 37866
Number of extensions: 390618
Number of successful extensions: 1490
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 31
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.