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Search of human proteins with 223972636
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens] 829 0.0
gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 773 0.0
gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 773 0.0
gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens] 707 0.0
gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens] 608 e-174
gi|239746922 PREDICTED: similar to cancer/testis antigen family ... 35 0.093
gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens] 33 0.35
gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens] 33 0.35
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 32 0.79
gi|239752405 PREDICTED: similar to cancer/testis antigen family ... 32 1.0
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 31 2.3
gi|4506773 S100 calcium-binding protein A9 [Homo sapiens] 30 5.1
gi|118498364 dapper 1 isoform 2 [Homo sapiens] 29 6.7
gi|24158478 dapper 1 isoform 1 [Homo sapiens] 29 6.7
gi|49472835 bridging integrator 2 [Homo sapiens] 29 6.7
gi|91208420 bassoon protein [Homo sapiens] 29 8.7
gi|89179321 smooth muscle cell associated protein-1 isoform 3 [H... 29 8.7
gi|29725607 smooth muscle cell associated protein-1 isoform 2 [H... 29 8.7
>gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens]
Length = 406
Score = 829 bits (2142), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVRGLHHEDG 180
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVRGLHHEDG
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVRGLHHEDG 180
Query: 181 SQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQL 240
SQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQL
Sbjct: 181 SQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQL 240
Query: 241 SLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVG 300
SLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVG
Sbjct: 241 SLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVG 300
Query: 301 LKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELM 360
LKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELM
Sbjct: 301 LKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELM 360
Query: 361 LCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 406
LCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL
Sbjct: 361 LCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 406
>gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 773 bits (1997), Expect = 0.0
Identities = 396/465 (85%), Positives = 399/465 (85%), Gaps = 59/465 (12%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG---------------MVSNMEGTA 165
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG +V+ G +
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 166 GG---------------------------------ERPSV-----------RGLHHEDGS 181
GG P V RGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 182 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 241
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 300
Query: 242 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 301
LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 301 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 360
Query: 302 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML 361
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML
Sbjct: 361 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML 420
Query: 362 CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 406
CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL
Sbjct: 421 CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 465
>gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 773 bits (1997), Expect = 0.0
Identities = 396/465 (85%), Positives = 399/465 (85%), Gaps = 59/465 (12%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG---------------MVSNMEGTA 165
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG +V+ G +
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 166 GG---------------------------------ERPSV-----------RGLHHEDGS 181
GG P V RGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 182 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 241
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 300
Query: 242 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 301
LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 301 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 360
Query: 302 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML 361
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML
Sbjct: 361 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML 420
Query: 362 CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 406
CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL
Sbjct: 421 CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 465
>gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens]
Length = 439
Score = 707 bits (1826), Expect = 0.0
Identities = 370/465 (79%), Positives = 373/465 (80%), Gaps = 85/465 (18%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG---------------MVSNMEGTA 165
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG +V+ G +
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 166 GG---------------------------------ERPSV-----------RGLHHEDGS 181
GG P V RGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 182 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 241
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEE
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEE----------------------- 277
Query: 242 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 301
AFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 278 ---AFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 334
Query: 302 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML 361
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML
Sbjct: 335 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML 394
Query: 362 CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 406
CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL
Sbjct: 395 CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL 439
>gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens]
Length = 402
Score = 608 bits (1567), Expect = e-174
Identities = 326/424 (76%), Positives = 329/424 (77%), Gaps = 87/424 (20%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSV-------- 172
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSV
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 173 ----------------RGLH----------HEDGS--QHI------------GLLH---- 188
G H ED S H+ GL H
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 189 -------PGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 241
PGDRGPDHEYVLVEEAECAMSEREAAPN
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPN------------------------- 275
Query: 242 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 301
EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 276 -EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 334
Query: 302 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK--EL 359
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK +
Sbjct: 335 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQH 394
Query: 360 MLCY 363
LC+
Sbjct: 395 QLCH 398
>gi|239746922 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 2 [Homo sapiens]
Length = 294
Score = 35.4 bits (80), Expect = 0.093
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 141 VKRNEEAQVHDK-LNSGMVSNMEG---------TAGGERPSVRGLHHEDGSQHIGLLHP- 189
++ ++EA V+ + + V + EG T G +RGL E+G Q GL
Sbjct: 10 IQEDQEAPVNQEGAQAEAVGDREGGDSGPDSGNTVAGVAGPMRGLGEEEGEQAAGLAAAP 69
Query: 190 --GDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEEAFF 247
G+ D E +VEE E ER A N +LV RR P R F L + +
Sbjct: 70 GGGNAEEDSEIRIVEEEEEEEEERNEADNFDLV----AAARRYPIRGFRMEFLDMVHSLL 125
Query: 248 L 248
L
Sbjct: 126 L 126
>gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 0.35
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 277 QPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSL 336
+P Y Y +G+ K+G D L+Y P +HA Y +D
Sbjct: 214 RPAHELRYSIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAPED------ 267
Query: 337 RRPLSWKSLAALSRVSVNVSKELMLC 362
+ + L A R+ +V K L+LC
Sbjct: 268 --TIPLQDLVAAGRLGTSVRKTLLLC 291
>gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 0.35
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 277 QPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSL 336
+P Y Y +G+ K+G D L+Y P +HA Y +D
Sbjct: 214 RPAHELRYSIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAPED------ 267
Query: 337 RRPLSWKSLAALSRVSVNVSKELMLC 362
+ + L A R+ +V K L+LC
Sbjct: 268 --TIPLQDLVAAGRLGTSVRKTLLLC 291
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.79
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 141 VKRNEEAQVHDK-LNSGMVSNMEG---------TAGGERPSVRGLHHEDGSQHIGLLHP- 189
++ ++EA V+ + + V + EG T G +RGL E+G Q GL
Sbjct: 10 IQEDQEAPVNQEGAQAEAVGDREGGDSGPDSGNTVAGVAGPMRGLGEEEGEQAAGLAAAP 69
Query: 190 --GDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEEAFF 247
G+ D E +VEE E ER A N +LV RR P R F L + +
Sbjct: 70 GGGNAEEDSEIRIVEEEE-EEEERNEADNFDLV----AAARRYPIRGFRMEFLDMVHSLL 124
Query: 248 L 248
L
Sbjct: 125 L 125
>gi|239752405 PREDICTED: similar to cancer/testis antigen family
147, member B1 [Homo sapiens]
Length = 290
Score = 32.0 bits (71), Expect = 1.0
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 164 TAGGERPSVRGLHHEDGSQHIGLLHP---GDRGPDHEYVLVEEAECAMSEREAAPNEELV 220
T G +RGL E+G Q GL G+ D E +VEE E ER A N +LV
Sbjct: 43 TVAGVAGPMRGLGEEEGEQAAGLAAAPGGGNAEEDSEIRIVEEEE-EEEERNEADNFDLV 101
Query: 221 QRNRLICRRNPYRIFEYLQLSLEEAFFL 248
RR P R F L + + L
Sbjct: 102 ----AAARRYPIRGFRMEFLDMVHSLLL 125
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 30.8 bits (68), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 359 LMLCYLIKPSTMTDKEMESPECMKRIKVQEVIL 391
L +C I+P T ++KE+ES C+ + Q V+L
Sbjct: 59 LQVCLRIRPFTQSEKELESEGCVHILDSQTVVL 91
>gi|4506773 S100 calcium-binding protein A9 [Homo sapiens]
Length = 114
Score = 29.6 bits (65), Expect = 5.1
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 19/119 (15%)
Query: 85 LVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRN 144
+ K ++ N+ I + +Q+SV+ QG+ + VR+ L+++ K K N
Sbjct: 1 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLK-------KEN 53
Query: 145 EEAQVHDKLNSGMVSNMEGTAGGER-----PSVRGLHHEDGSQHIGLLHPGDRGPDHEY 198
+ +V + + + +N + E + HE +H GD GP H +
Sbjct: 54 KNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWASHEK-------MHEGDEGPGHHH 105
>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
Length = 799
Score = 29.3 bits (64), Expect = 6.7
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 3 EAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRA--EMINNNVIVRNAEDIEQL 60
EA+ A + +R Y +P+P+P+ + + + A E + ++ +V +ED +
Sbjct: 652 EALRRARRGRRENVGLYPAPVPLPYASPYAYVASDSEYSAECESLFHSTVVDTSEDEQSN 711
Query: 61 YGKGYFGKGILSRSRPSF-----TISDPKLVAK--WKDMKTNMPIIT 100
Y FG S S F T SD + W +PI T
Sbjct: 712 YTTNCFGDSESSVSEGEFVGESTTTSDSEESGGLIWSQFVQTLPIQT 758
>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
Length = 836
Score = 29.3 bits (64), Expect = 6.7
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 3 EAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRA--EMINNNVIVRNAEDIEQL 60
EA+ A + +R Y +P+P+P+ + + + A E + ++ +V +ED +
Sbjct: 689 EALRRARRGRRENVGLYPAPVPLPYASPYAYVASDSEYSAECESLFHSTVVDTSEDEQSN 748
Query: 61 YGKGYFGKGILSRSRPSF-----TISDPKLVAK--WKDMKTNMPIIT 100
Y FG S S F T SD + W +PI T
Sbjct: 749 YTTNCFGDSESSVSEGEFVGESTTTSDSEESGGLIWSQFVQTLPIQT 795
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 29.3 bits (64), Expect = 6.7
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 39 IFRAEM--INNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISDP---KLVAKWKDMK 93
+F EM +N+N+ ++ +Q K + KG+ S SR S IS P V+
Sbjct: 219 VFYREMSKLNHNLYEVMSKLEKQHSNKVFVVKGLSSSSRRSLVISPPVRTATVSSPLTSP 278
Query: 94 TNMPIITSKRYQHSVEWAAELM--RRQGQDESTVRRILKDYTKPLEHPPVKRNEE 146
T+ ++ K SV +L QG+D S ++ +L++ E +EE
Sbjct: 279 TSPSTLSLKSESESVSATEDLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEE 333
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 28.9 bits (63), Expect = 8.7
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 133 TKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVRGLHHEDGSQHIGLLHPGDR 192
T P P+K EEA + ++ +G A G R G G + +G D
Sbjct: 1173 TTPSSGRPLKSAEEAYEEMMRKAELLQRQQGQAAGARGPHGGPSQPTGPRGLGSFEYQDT 1232
Query: 193 GPDHEYVLVEE--AECAMSEREAAPNEELVQRNRLICR 228
D EY + AE + AA EE++Q ++ I R
Sbjct: 1233 -TDREYGQAAQPAAEGTPASLGAAVYEEILQTSQSIVR 1269
>gi|89179321 smooth muscle cell associated protein-1 isoform 3 [Homo
sapiens]
Length = 929
Score = 28.9 bits (63), Expect = 8.7
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 49 VIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQH-- 106
+++ + ED E L G +L+ RP+ P++ W ++ + + +++ QH
Sbjct: 808 LVLYSGEDDELLQRAAAGGLAMLTSMRPTLCSRIPQVTTHWLEILQALLLSSNQELQHRG 867
Query: 107 ----------SVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG 156
S E A+ LM ES + IL K +H PV R A + + G
Sbjct: 868 AVVVLNMVEASREIASTLM------ESEMMEILSVLAKG-DHSPVTRAAAACLDKAVEYG 920
Query: 157 MVS-NMEG 163
++ N +G
Sbjct: 921 LIQPNQDG 928
>gi|29725607 smooth muscle cell associated protein-1 isoform 2 [Homo
sapiens]
Length = 944
Score = 28.9 bits (63), Expect = 8.7
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 49 VIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQH-- 106
+++ + ED E L G +L+ RP+ P++ W ++ + + +++ QH
Sbjct: 823 LVLYSGEDDELLQRAAAGGLAMLTSMRPTLCSRIPQVTTHWLEILQALLLSSNQELQHRG 882
Query: 107 ----------SVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSG 156
S E A+ LM ES + IL K +H PV R A + + G
Sbjct: 883 AVVVLNMVEASREIASTLM------ESEMMEILSVLAKG-DHSPVTRAAAACLDKAVEYG 935
Query: 157 MVS-NMEG 163
++ N +G
Sbjct: 936 LIQPNQDG 943
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,652,934
Number of Sequences: 37866
Number of extensions: 753266
Number of successful extensions: 1632
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 25
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.