BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sapiens] (102 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sa... 219 3e-58 gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sa... 210 2e-55 gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sap... 210 2e-55 gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo sa... 142 4e-35 gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens] 29 0.91 gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 28 2.0 gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 28 2.0 gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 28 2.0 gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 28 2.0 gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 28 2.0 gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 28 2.0 gi|58082081 phosphoinositide-3-kinase, regulatory subunit 6 [Hom... 27 2.7 gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ... 27 3.5 gi|4506875 selectin L precursor [Homo sapiens] 27 4.5 gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 26 5.9 gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 26 7.7 gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 26 7.7 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 26 7.7 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 26 7.7 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 26 7.7 >gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sapiens] Length = 102 Score = 219 bits (559), Expect = 3e-58 Identities = 102/102 (100%), Positives = 102/102 (100%) Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVLGRME 102 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVLGRME Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVLGRME 102 >gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sapiens] Length = 114 Score = 210 bits (535), Expect = 2e-55 Identities = 97/98 (98%), Positives = 98/98 (100%) Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVL 98 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHV+ Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVV 98 >gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sapiens] Length = 202 Score = 210 bits (535), Expect = 2e-55 Identities = 97/98 (98%), Positives = 98/98 (100%) Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVL 98 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHV+ Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVV 98 Score = 52.4 bits (124), Expect = 8e-08 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 31 GYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGN 90 G T V+E SG WG+W+ P C G + FSL+VE P + GD+TA N +R C+ G Sbjct: 93 GNTHVVESQSGS-WGEWSEPLWCRGGAYLVAFSLRVEAPTTL-GDNTAANNVRFRCSDGE 150 Query: 91 VL 92 L Sbjct: 151 EL 152 Score = 46.2 bits (108), Expect = 6e-06 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 41 GGPWGDWA-WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCAR 88 G WGD+ W + CP G A G K++ P+G+ GDDTALN RL C R Sbjct: 156 GLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGL-GDDTALNDARLFCCR 201 >gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo sapiens] Length = 70 Score = 142 bits (359), Expect = 4e-35 Identities = 65/66 (98%), Positives = 66/66 (100%) Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60 Query: 61 GFSLKV 66 GFSLK+ Sbjct: 61 GFSLKL 66 >gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens] Length = 317 Score = 28.9 bits (63), Expect = 0.91 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%) Query: 40 SGGPWGDWAWP---EMCPDGFFASGFSLKVEPPQGIP 73 S GPW D ++P P F+ S + V PP G P Sbjct: 125 SSGPWRDCSFPMSQRSFPASFWNSAYQAPVPPPLGSP 161 >gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] Length = 254 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86 WP + G G + + G+PGD ++G+R HC Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173 >gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] Length = 216 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86 WP + G G + + G+PGD ++G+R HC Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173 >gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] Length = 204 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86 WP + G G + + G+PGD ++G+R HC Sbjct: 88 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 124 >gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] Length = 253 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86 WP + G G + + G+PGD ++G+R HC Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173 >gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] Length = 253 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86 WP + G G + + G+PGD ++G+R HC Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173 >gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] Length = 255 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86 WP + G G + + G+PGD ++G+R HC Sbjct: 139 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 175 >gi|58082081 phosphoinositide-3-kinase, regulatory subunit 6 [Homo sapiens] Length = 754 Score = 27.3 bits (59), Expect = 2.7 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 74 GDDTALNGI-RLHCARGNVLGNTHVLGRM 101 GD L G+ RLH AR VLG+ +LGR+ Sbjct: 402 GDGEMLPGVSRLHTARVLVLGDDRMLGRL 430 >gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo sapiens] Length = 977 Score = 26.9 bits (58), Expect = 3.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 17 RATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPD 55 R++ +C Q +GY A + T P + +WPE PD Sbjct: 602 RSSCTSCRQCSWYSGYLARLYRTQERPLAEVSWPEGQPD 640 >gi|4506875 selectin L precursor [Homo sapiens] Length = 372 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%) Query: 21 FTCAQTDGRNGYTAVIEVTSGGPWGDWAWPE 51 F+C++ G IE T+ GP+G+W+ PE Sbjct: 225 FSCSEGTNLTG----IEETTCGPFGNWSSPE 251 >gi|224465238 hypothetical protein LOC283999 [Homo sapiens] Length = 394 Score = 26.2 bits (56), Expect = 5.9 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 7 AKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKV 66 A+ + L+ LLR+ GF + + PWG W W P FA+ S Sbjct: 59 ARQVHLVWLLRSRGFREIKERAQG--------PGASPWGRWDW---SPSPRFAARLSTSS 107 Query: 67 EPPQG 71 PQG Sbjct: 108 PFPQG 112 >gi|33598931 scavenger receptor class F, member 1 isoform 3 precursor [Homo sapiens] Length = 569 Score = 25.8 bits (55), Expect = 7.7 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 38 VTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGI 72 V S G WG + CP GF + S+ E P+G+ Sbjct: 371 VCSAGYWGP-SCNASCPAGFHGNNCSVPCECPEGL 404 >gi|33598929 scavenger receptor class F, member 1 isoform 1 precursor [Homo sapiens] Length = 830 Score = 25.8 bits (55), Expect = 7.7 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 38 VTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGI 72 V S G WG + CP GF + S+ E P+G+ Sbjct: 371 VCSAGYWGP-SCNASCPAGFHGNNCSVPCECPEGL 404 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 25.8 bits (55), Expect = 7.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 69 PQGIPGDDTALNGIRLHCARGNVLGNTH 96 P G PG A +G+RL R +LG H Sbjct: 1429 PPGPPGTMGASSGVRLWATRQAMLGQVH 1456 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 25.8 bits (55), Expect = 7.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 69 PQGIPGDDTALNGIRLHCARGNVLGNTH 96 P G PG A +G+RL R +LG H Sbjct: 1014 PPGPPGTMGASSGVRLWATRQAMLGQVH 1041 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 25.8 bits (55), Expect = 7.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 69 PQGIPGDDTALNGIRLHCARGNVLGNTH 96 P G PG A +G+RL R +LG H Sbjct: 1194 PPGPPGTMGASSGVRLWATRQAMLGQVH 1221 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.141 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,635,374 Number of Sequences: 37866 Number of extensions: 218413 Number of successful extensions: 387 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 377 Number of HSP's gapped (non-prelim): 22 length of query: 102 length of database: 18,247,518 effective HSP length: 73 effective length of query: 29 effective length of database: 15,483,300 effective search space: 449015700 effective search space used: 449015700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.