Search of human proteins with 222144303

Search of human proteins with 222144303

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo
sapiens]
         (114 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sa...   245   5e-66
gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sap...   227   2e-60
gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sa...   210   2e-55
gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo sa...   142   4e-35
gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens]                  29   0.92 
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]        28   2.0  
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]        28   2.0  
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]         28   2.0  
gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]        28   2.0  
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]        28   2.0  
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]        28   2.0  
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ...    27   3.5  
gi|4506875 selectin L precursor [Homo sapiens]                         27   4.6  
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    27   4.6  
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    27   4.6  
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    27   4.6  
gi|224465238 hypothetical protein LOC283999 [Homo sapiens]             26   5.9  
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu...    26   7.8  
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu...    26   7.8  

>gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo
           sapiens]
          Length = 114

 Score =  245 bits (626), Expect = 5e-66
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
           MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1   MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61  GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGRWGAGVEDPLG 114
           GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGRWGAGVEDPLG
Sbjct: 61  GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGRWGAGVEDPLG 114


>gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo
           sapiens]
          Length = 202

 Score =  227 bits (578), Expect = 2e-60
 Identities = 105/106 (99%), Positives = 105/106 (99%)

Query: 1   MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
           MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1   MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61  GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGRWG 106
           GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSG WG
Sbjct: 61  GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWG 106



 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 31  GYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGN 90
           G T V+E  SG  WG+W+ P  C  G +   FSL+VE P  + GD+TA N +R  C+ G 
Sbjct: 93  GNTHVVESQSGS-WGEWSEPLWCRGGAYLVAFSLRVEAPTTL-GDNTAANNVRFRCSDGE 150

Query: 91  VLGNTHVVESQSGRW 105
            L    +     G W
Sbjct: 151 ELQGPGLSWGDFGDW 165



 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 41  GGPWGDWA-WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCAR 88
           G  WGD+  W + CP G  A G   K++ P+G+ GDDTALN  RL C R
Sbjct: 156 GLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGL-GDDTALNDARLFCCR 201


>gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo
          sapiens]
          Length = 102

 Score =  210 bits (535), Expect = 2e-55
 Identities = 97/98 (98%), Positives = 98/98 (100%)

Query: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
          MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVV 98
          GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHV+
Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVL 98


>gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo
          sapiens]
          Length = 70

 Score =  142 bits (359), Expect = 4e-35
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
          MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1  MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60

Query: 61 GFSLKV 66
          GFSLK+
Sbjct: 61 GFSLKL 66


>gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens]
          Length = 317

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 40  SGGPWGDWAWP---EMCPDGFFASGFSLKVEPPQGIP 73
           S GPW D ++P      P  F+ S +   V PP G P
Sbjct: 125 SSGPWRDCSFPMSQRSFPASFWNSAYQAPVPPPLGSP 161


>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
          Length = 254

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
           WP +   G    G +  +    G+PGD   ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173


>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
          Length = 216

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
           WP +   G    G +  +    G+PGD   ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173


>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
          Length = 204

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
           WP +   G    G +  +    G+PGD   ++G+R HC
Sbjct: 88  WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 124


>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
          Length = 253

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
           WP +   G    G +  +    G+PGD   ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173


>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
          Length = 253

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
           WP +   G    G +  +    G+PGD   ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173


>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
          Length = 255

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
           WP +   G    G +  +    G+PGD   ++G+R HC
Sbjct: 139 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 175


>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
           sapiens]
          Length = 977

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 17  RATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPD 55
           R++  +C Q    +GY A +  T   P  + +WPE  PD
Sbjct: 602 RSSCTSCRQCSWYSGYLARLYRTQERPLAEVSWPEGQPD 640


>gi|4506875 selectin L precursor [Homo sapiens]
          Length = 372

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 21  FTCAQTDGRNGYTAVIEVTSGGPWGDWAWPE 51
           F+C++     G    IE T+ GP+G+W+ PE
Sbjct: 225 FSCSEGTNLTG----IEETTCGPFGNWSSPE 251


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 69   PQGIPGDDTALNGIRLHCARGNVLGNTHVV 98
            P G PG   A +G+RL   R  +LG  H V
Sbjct: 1429 PPGPPGTMGASSGVRLWATRQAMLGQVHEV 1458


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
            sapiens]
          Length = 1336

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 69   PQGIPGDDTALNGIRLHCARGNVLGNTHVV 98
            P G PG   A +G+RL   R  +LG  H V
Sbjct: 1014 PPGPPGTMGASSGVRLWATRQAMLGQVHEV 1043


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1516

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 69   PQGIPGDDTALNGIRLHCARGNVLGNTHVV 98
            P G PG   A +G+RL   R  +LG  H V
Sbjct: 1194 PPGPPGTMGASSGVRLWATRQAMLGQVHEV 1223


>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
          Length = 394

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 7   AKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKV 66
           A+ + L+ LLR+ GF   +   +             PWG W W    P   FA+  S   
Sbjct: 59  ARQVHLVWLLRSRGFREIKERAQG--------PGASPWGRWDW---SPSPRFAARLSTSS 107

Query: 67  EPPQG 71
             PQG
Sbjct: 108 PFPQG 112


>gi|33598931 scavenger receptor class F, member 1 isoform 3
           precursor [Homo sapiens]
          Length = 569

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 38  VTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGI 72
           V S G WG  +    CP GF  +  S+  E P+G+
Sbjct: 371 VCSAGYWGP-SCNASCPAGFHGNNCSVPCECPEGL 404


>gi|33598929 scavenger receptor class F, member 1 isoform 1
           precursor [Homo sapiens]
          Length = 830

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 38  VTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGI 72
           V S G WG  +    CP GF  +  S+  E P+G+
Sbjct: 371 VCSAGYWGP-SCNASCPAGFHGNNCSVPCECPEGL 404


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,227,514
Number of Sequences: 37866
Number of extensions: 253266
Number of successful extensions: 450
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 21
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.