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Search of human proteins with 22035700
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens] 397 e-111
gi|22035698 synaptogyrin 1 isoform 1b [Homo sapiens] 322 2e-88
gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens] 272 1e-73
gi|4759202 synaptogyrin 2 [Homo sapiens] 166 9e-42
gi|6631112 synaptogyrin 3 [Homo sapiens] 162 1e-40
gi|22035702 synaptogyrin 4 [Homo sapiens] 125 3e-29
gi|194018518 synaptoporin isoform 1 [Homo sapiens] 32 0.33
gi|21389481 synaptoporin isoform 2 [Homo sapiens] 32 0.33
gi|61635915 membrane-associated transporter protein isoform a [H... 30 1.3
gi|61636000 membrane-associated transporter protein isoform b [H... 30 1.3
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 30 1.3
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 30 1.3
gi|122937337 fat storage-inducing transmembrane protein 2 [Homo ... 30 1.6
gi|21729876 ATP-binding cassette, sub-family C, member 11 isofor... 28 4.8
gi|21729873 ATP-binding cassette, sub-family C, member 11 isofor... 28 4.8
gi|15149474 ATP-binding cassette, sub-family C, member 11 isofor... 28 4.8
gi|53828683 olfactory receptor, family 52, subfamily B, member 2... 28 4.8
gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo sap... 28 6.3
>gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]
Length = 192
Score = 397 bits (1020), Expect = e-111
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MLTLEFGILEFDPSWIGSWTQRSWVSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFC 60
MLTLEFGILEFDPSWIGSWTQRSWVSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFC
Sbjct: 1 MLTLEFGILEFDPSWIGSWTQRSWVSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFC 60
Query: 61 IYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLW 120
IYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLW
Sbjct: 61 IYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLW 120
Query: 121 FVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQE 180
FVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQE
Sbjct: 121 FVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQE 180
Query: 181 EYSTLFPASAQP 192
EYSTLFPASAQP
Sbjct: 181 EYSTLFPASAQP 192
>gi|22035698 synaptogyrin 1 isoform 1b [Homo sapiens]
Length = 191
Score = 322 bits (824), Expect = 2e-88
Identities = 161/168 (95%), Positives = 161/168 (95%), Gaps = 7/168 (4%)
Query: 25 VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84
VSW LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL
Sbjct: 31 VSW-------LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 83
Query: 85 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG 144
LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG
Sbjct: 84 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG 143
Query: 145 TDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQEEYSTLFPASAQP 192
TDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQEEYSTLFPASAQP
Sbjct: 144 TDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQEEYSTLFPASAQP 191
>gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens]
Length = 233
Score = 272 bits (696), Expect = 1e-73
Identities = 139/172 (80%), Positives = 146/172 (84%), Gaps = 11/172 (6%)
Query: 25 VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84
VSW LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL
Sbjct: 31 VSW-------LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 83
Query: 85 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG 144
LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG
Sbjct: 84 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG 143
Query: 145 TDAARAAIAFSFFSIFTWSLTAALAVRRFK----DLSFQEEYSTLFPASAQP 192
TDAARAAIAFSFFSIFTW+ A LA +R++ F ++Y S+ P
Sbjct: 144 TDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMP 195
>gi|4759202 synaptogyrin 2 [Homo sapiens]
Length = 224
Score = 166 bits (421), Expect = 9e-42
Identities = 76/146 (52%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
Query: 29 SRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLA 88
+R C +F+++VF I EGY N+ + +C++NRN +AC YG A+GVLAFL +L
Sbjct: 28 ARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLV 87
Query: 89 LDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAA 148
+D YFPQIS+ DRK V+ D+ SA W FLWFVGFC+L NQW V+ PKD + G D+
Sbjct: 88 VDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKD--VLVGADSV 145
Query: 149 RAAIAFSFFSIFTWSLTAALAVRRFK 174
RAAI FSFFSIF+W + A+LA +R+K
Sbjct: 146 RAAITFSFFSIFSWGVLASLAYQRYK 171
>gi|6631112 synaptogyrin 3 [Homo sapiens]
Length = 229
Score = 162 bits (411), Expect = 1e-40
Identities = 80/140 (57%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 35 LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFP 94
+FSI VFG IVNEGY+N+ S E C++N N AC +GVA+G+ AFL C +L LDV F
Sbjct: 34 VFSIAVFGPIVNEGYVNTDSGPELRCVFNGNAGACRFGVALGLGAFLACAAFLLLDVRFQ 93
Query: 95 QISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAF 154
QISSV+DR++AVL D+G S W+FLWFVGFC+L NQWQ + P G DAARAAIAF
Sbjct: 94 QISSVRDRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRTAPGPATTQAG-DAARAAIAF 152
Query: 155 SFFSIFTWSLTAALAVRRFK 174
SFFSI +W A++RF+
Sbjct: 153 SFFSILSWVALTVKALQRFR 172
>gi|22035702 synaptogyrin 4 [Homo sapiens]
Length = 234
Score = 125 bits (313), Expect = 3e-29
Identities = 64/142 (45%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 35 LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFP 94
+FS++VF S++ +GY N + CI N N ACS+ V G LAFL+CL +L LD
Sbjct: 32 VFSLIVFSSLLTDGYQNKMESPQLHCILNSNSVACSFAVGAGFLAFLSCLAFLVLDTQET 91
Query: 95 QISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAF 154
+I+ + + L D ++ WA +WF+GFC+LANQWQ S PK+ L G+ +A+AAIAF
Sbjct: 92 RIAGTRFKTAFQLLDFILAVLWAVVWFMGFCFLANQWQHSPPKEFLL--GSSSAQAAIAF 149
Query: 155 SFFSIFTWSLTAALAVRRFKDL 176
+FFSI W A LA F+DL
Sbjct: 150 TFFSILVWIFQAYLA---FQDL 168
>gi|194018518 synaptoporin isoform 1 [Homo sapiens]
Length = 285
Score = 32.0 bits (71), Expect = 0.33
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 55 EGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSA 114
E ++ + + ++ + V V V AFL L + ++F + ++ + L D V+
Sbjct: 85 ERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQ--NKYRENNRGPLIDFIVTV 142
Query: 115 FWAFLWFVG 123
++FLW VG
Sbjct: 143 VFSFLWLVG 151
>gi|21389481 synaptoporin isoform 2 [Homo sapiens]
Length = 265
Score = 32.0 bits (71), Expect = 0.33
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 55 EGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSA 114
E ++ + + ++ + V V V AFL L + ++F + ++ + L D V+
Sbjct: 65 ERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQ--NKYRENNRGPLIDFIVTV 122
Query: 115 FWAFLWFVG 123
++FLW VG
Sbjct: 123 VFSFLWLVG 131
>gi|61635915 membrane-associated transporter protein isoform a [Homo
sapiens]
Length = 530
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 20/100 (20%)
Query: 25 VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84
+ W + LF G IV G SA EF IY R GV VG F
Sbjct: 326 IGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYER-------GVEVGCWGFCINS 378
Query: 85 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGF 124
++ +L YF +K ++S IG+ L+F G+
Sbjct: 379 VFSSLYSYF---------QKVLVSYIGLKG----LYFTGY 405
>gi|61636000 membrane-associated transporter protein isoform b [Homo
sapiens]
Length = 460
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 20/100 (20%)
Query: 25 VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84
+ W + LF G IV G SA EF IY R GV VG F
Sbjct: 326 IGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYER-------GVEVGCWGFCINS 378
Query: 85 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGF 124
++ +L YF +K ++S IG+ L+F G+
Sbjct: 379 VFSSLYSYF---------QKVLVSYIGLKG----LYFTGY 405
>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
sapiens]
Length = 208
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 68 ACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYL 127
+CS V GVL + L L + PQI+ L+D+ + AFL+F+ L
Sbjct: 91 SCSAFVVTGVLLIM---FSLNLHMRIPQINWN-------LTDLVNTGLSAFLFFIASIVL 140
Query: 128 ANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK 174
A LN A AA+ F F + +++ LAV++++
Sbjct: 141 A-----------ALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWR 176
>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
sapiens]
Length = 234
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 68 ACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYL 127
+CS V GVL + L L + PQI+ L+D+ + AFL+F+ L
Sbjct: 91 SCSAFVVTGVLLIM---FSLNLHMRIPQINWN-------LTDLVNTGLSAFLFFIASIVL 140
Query: 128 ANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK 174
A LN A AA+ F F + +++ LAV++++
Sbjct: 141 A-----------ALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWR 176
>gi|122937337 fat storage-inducing transmembrane protein 2 [Homo
sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 73 VAVGVLAFLTCLLYLALDVYFPQIS-SVKDRKKAVLSDIGVSAFW 116
VA+G+L F+ L++L VYF +S V +LS G FW
Sbjct: 193 VALGILTFIWVLMFLCTAVYFHNLSQKVFGTLFGLLSWYGTYGFW 237
>gi|21729876 ATP-binding cassette, sub-family C, member 11 isoform b
[Homo sapiens]
Length = 1344
Score = 28.1 bits (61), Expect = 4.8
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 9 LEFDPSWIGSWTQRSWVSWRSRPGCELFS-IVVFGSIVNEGYLNSASEGEEFCIYNRNPN 67
L F SWI + QR+ + +R+ F ++ F S+++ + GE + + N
Sbjct: 218 LSFSSSWIIN--QRTAIRFRAAVSSFAFEKLIQFKSVIH------ITSGEAISFFTGDVN 269
Query: 68 ACSYGVAVGVLAFLTC--LLYLALDVYF 93
GV G L +TC L+ ++ YF
Sbjct: 270 YLFEGVCYGPLVLITCASLVICSISSYF 297
>gi|21729873 ATP-binding cassette, sub-family C, member 11 isoform a
[Homo sapiens]
Length = 1382
Score = 28.1 bits (61), Expect = 4.8
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 9 LEFDPSWIGSWTQRSWVSWRSRPGCELFS-IVVFGSIVNEGYLNSASEGEEFCIYNRNPN 67
L F SWI + QR+ + +R+ F ++ F S+++ + GE + + N
Sbjct: 218 LSFSSSWIIN--QRTAIRFRAAVSSFAFEKLIQFKSVIH------ITSGEAISFFTGDVN 269
Query: 68 ACSYGVAVGVLAFLTC--LLYLALDVYF 93
GV G L +TC L+ ++ YF
Sbjct: 270 YLFEGVCYGPLVLITCASLVICSISSYF 297
>gi|15149474 ATP-binding cassette, sub-family C, member 11 isoform a
[Homo sapiens]
Length = 1382
Score = 28.1 bits (61), Expect = 4.8
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 9 LEFDPSWIGSWTQRSWVSWRSRPGCELFS-IVVFGSIVNEGYLNSASEGEEFCIYNRNPN 67
L F SWI + QR+ + +R+ F ++ F S+++ + GE + + N
Sbjct: 218 LSFSSSWIIN--QRTAIRFRAAVSSFAFEKLIQFKSVIH------ITSGEAISFFTGDVN 269
Query: 68 ACSYGVAVGVLAFLTC--LLYLALDVYF 93
GV G L +TC L+ ++ YF
Sbjct: 270 YLFEGVCYGPLVLITCASLVICSISSYF 297
>gi|53828683 olfactory receptor, family 52, subfamily B, member 2
[Homo sapiens]
Length = 323
Score = 28.1 bits (61), Expect = 4.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 127 LANQWQVSKPKDNPLNEG--TDAARAAIAFSFFSIFTWSLTAAL 168
LAN + P NP+ G T R +A FF I TW T+ L
Sbjct: 278 LANLYVAVPPMLNPIVYGVKTKQIREGVAHRFFDIKTWCCTSPL 321
>gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo
sapiens]
Length = 1581
Score = 27.7 bits (60), Expect = 6.3
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 78 LAFLTCLLYLALDVYFPQISSVKDRK--KAVLSDIGV--SAFWAF--LWFVGFCYL 127
L +C++ + +Y+ ++ ++RK KA+++ +G+ SAFW L + GF ++
Sbjct: 224 LYLFSCIISFSSFIYYASVNVTRERKRMKALMTMMGLRDSAFWLSWGLLYAGFIFI 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,211,435
Number of Sequences: 37866
Number of extensions: 271757
Number of successful extensions: 681
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 20
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.