Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 11496273
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11496273 thymosin-like 8 [Homo sapiens]
(45 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|167555119 thymosin beta15b [Homo sapiens] 92 7e-20
gi|11496273 thymosin-like 8 [Homo sapiens] 92 7e-20
gi|11056061 thymosin, beta 4 [Homo sapiens] 70 3e-13
gi|34013530 thymosin-like 3 [Homo sapiens] 69 1e-12
gi|10863895 thymosin, beta 10 [Homo sapiens] 64 3e-11
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 64 3e-11
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 63 4e-11
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 63 4e-11
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 63 4e-11
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 55 9e-09
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 55 9e-09
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 54 4e-08
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 39 7e-04
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 39 7e-04
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 39 7e-04
gi|38570109 CAP-binding protein complex interacting protein 1 is... 27 2.7
gi|38570107 CAP-binding protein complex interacting protein 1 is... 27 2.7
gi|221219020 NYD-SP11 protein [Homo sapiens] 27 3.5
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 27 4.6
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 27 4.6
gi|24430183 outer dense fiber of sperm tails 2 isoform 2 [Homo s... 26 7.8
gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo s... 26 7.8
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 70.5 bits (171), Expect = 3e-13
Identities = 31/40 (77%), Positives = 38/40 (95%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
MSDKPD++E+EKFD+SKLKKT T+EKN LPSKETI+QEK+
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/40 (75%), Positives = 37/40 (92%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
MSDKPD++E+EKFD+ KLKKT T+EKN LPSKETI+QEK+
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 63.9 bits (154), Expect = 3e-11
Identities = 27/39 (69%), Positives = 35/39 (89%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
M+DKPD+ E+ FD++KLKKT T+EKNTLP+KETI+QEK
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 63.5 bits (153), Expect = 3e-11
Identities = 28/40 (70%), Positives = 36/40 (90%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
MSDKP ++E+EKFD+SKLKKT T+EKN L SKETI+QE++
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 63.2 bits (152), Expect = 4e-11
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
MS KPD+S+V KFDR KLKK N +EKNTL +ETIQQEKE +QT
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 63.2 bits (152), Expect = 4e-11
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
MS KPD+S+V KFDR KLKK N +EKNTL +ETIQQEKE +QT
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 63.2 bits (152), Expect = 4e-11
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
MS KPD+S+V KFDR KLKK N +EKNTL +ETIQQEKE +QT
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 55.5 bits (132), Expect = 9e-09
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
MSDK ++ E+EKF +SKLKKT +EKN PSKE I+QEK+
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 40
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 55.5 bits (132), Expect = 9e-09
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
MSDK ++ E+EKF +SKLKKT +EKN PSKE I+QEK+
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 40
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 53.5 bits (127), Expect = 4e-08
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 2 SDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
SDK ++ E+EKF +SKLKKT +EKN PSKE I+QEK+
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 163
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
M+ K DL E+ D++KLK T + KNTL +KET +QEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
M+ K DL E+ D++KLK T + KNTL +KET +QEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
M+ K DL E+ D++KLK T + KNTL +KET +QEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|38570109 CAP-binding protein complex interacting protein 1
isoform b [Homo sapiens]
Length = 1349
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 4 KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQ 43
+PDLSE R+KL + T + ++E I++ K+C+Q
Sbjct: 447 QPDLSE-----RTKLTEDKTTLTKKMTTEEVIEKFKKCIQ 481
>gi|38570107 CAP-binding protein complex interacting protein 1
isoform a [Homo sapiens]
Length = 1501
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 4 KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQ 43
+PDLSE R+KL + T + ++E I++ K+C+Q
Sbjct: 599 QPDLSE-----RTKLTEDKTTLTKKMTTEEVIEKFKKCIQ 633
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 9 EVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
+VEK + K KK ++K + KE + +EKE
Sbjct: 2279 QVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKE 2310
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
Length = 585
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 4 KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
K + E ++ + +K + +K+++ + + Q+E++C++TS
Sbjct: 161 KTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTS 202
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
[Homo sapiens]
Length = 851
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 4 KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
K + E ++ + +K + +K+++ + + Q+E++C++TS
Sbjct: 161 KTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTS 202
>gi|24430183 outer dense fiber of sperm tails 2 isoform 2 [Homo
sapiens]
Length = 638
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 15 RSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
R +++ E+ T+ K+ +QQEKEC+ +
Sbjct: 161 RHNIERMKEEKDFTILQKKHLQQEKECLMS 190
>gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo
sapiens]
Length = 805
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 15 RSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
R +++ E+ T+ K+ +QQEKEC+ +
Sbjct: 156 RHNIERMKEEKDFTILQKKHLQQEKECLMS 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.297 0.115 0.292
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,665,052
Number of Sequences: 37866
Number of extensions: 46943
Number of successful extensions: 169
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 22
length of query: 45
length of database: 18,247,518
effective HSP length: 19
effective length of query: 26
effective length of database: 17,528,064
effective search space: 455729664
effective search space used: 455729664
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.