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Search of human proteins with 219879828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219879828 rcRPE protein [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219879828 rcRPE protein [Homo sapiens] 466 e-132
gi|40385883 ribulose-5-phosphate-3-epimerase isoform 1 [Homo sap... 448 e-126
gi|24307923 ribulose-5-phosphate-3-epimerase isoform 2 [Homo sap... 300 7e-82
gi|61744483 solute carrier family 3, member 2 isoform f [Homo sa... 32 0.34
gi|61744481 solute carrier family 3, member 2 isoform e [Homo sa... 32 0.34
gi|61744479 solute carrier family 3, member 2 isoform d [Homo sa... 32 0.34
gi|65506891 solute carrier family 3, member 2 isoform c [Homo sa... 32 0.34
gi|61744477 solute carrier family 3, member 2 isoform b [Homo sa... 32 0.34
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa... 32 0.34
gi|155030194 RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [... 30 1.3
gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor... 28 5.0
gi|23238214 angiotensin I converting enzyme 1 isoform 2 precurso... 28 5.0
gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens] 28 6.5
gi|155030202 RAP1, GTP-GDP dissociation stimulator 1 isoform 6 [... 28 6.5
gi|155030200 RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [... 28 6.5
gi|155030198 RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [... 28 6.5
gi|155030196 RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [... 28 6.5
gi|155030192 RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [... 28 6.5
gi|167900452 phospholipase C-like 1 isoform a [Homo sapiens] 28 8.5
gi|167900450 phospholipase C-like 1 isoform b [Homo sapiens] 28 8.5
>gi|219879828 rcRPE protein [Homo sapiens]
Length = 228
Score = 466 bits (1200), Expect = e-132
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MASGCKIGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ 60
MASGCKIGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
Sbjct: 1 MASGCKIGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ 60
Query: 61 LGQDPFFDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIK 120
LGQDPFFDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIK
Sbjct: 61 LGQDPFFDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIK 120
Query: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGGVGS 180
PGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGGVGS
Sbjct: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGGVGS 180
Query: 181 DTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR 228
DTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR
Sbjct: 181 DTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR 228
>gi|40385883 ribulose-5-phosphate-3-epimerase isoform 1 [Homo
sapiens]
Length = 228
Score = 448 bits (1152), Expect = e-126
Identities = 219/228 (96%), Positives = 222/228 (97%)
Query: 1 MASGCKIGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ 60
MASGCKIGPSILNSDLANLGA+CL+MLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
Sbjct: 1 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ 60
Query: 61 LGQDPFFDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIK 120
LGQDPFFDMHMMVSKPEQWVKPMAVA ANQYTFHLEATENPG LIKDIRENGMKVGLAIK
Sbjct: 61 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK 120
Query: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGGVGS 180
PGTSVEYLAPWANQIDMALVMTVEPGFG QKFMEDMMPKVHWLRTQFPSLDIE DGGVG
Sbjct: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP 180
Query: 181 DTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR 228
DTVHKCAEAGANM VSGSAIMRSEDPRSVINLLRN+CSEAAQKRSLDR
Sbjct: 181 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 228
>gi|24307923 ribulose-5-phosphate-3-epimerase isoform 2 [Homo
sapiens]
Length = 178
Score = 300 bits (768), Expect = 7e-82
Identities = 153/178 (85%), Positives = 154/178 (86%), Gaps = 18/178 (10%)
Query: 69 MHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMK-------------- 114
MHMMVSKPEQWVKPMAVA ANQYTFHLEATENPG LIKDIRENGMK
Sbjct: 1 MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQ 60
Query: 115 ----VGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSL 170
VGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFG QKFMEDMMPKVHWLRTQFPSL
Sbjct: 61 GPLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL 120
Query: 171 DIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR 228
DIE DGGVG DTVHKCAEAGANM VSGSAIMRSEDPRSVINLLRN+CSEAAQKRSLDR
Sbjct: 121 DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 178
>gi|61744483 solute carrier family 3, member 2 isoform f [Homo
sapiens]
Length = 529
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 158 PKVHWLRTQFPSLDIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNIC 217
P + W + FP DI G ANMTV G +SEDP S+++L R +
Sbjct: 386 PVMLWDESSFP--DIPG-------------AVSANMTVKG----QSEDPGSLLSLFRRLS 426
Query: 218 SEAAQKRSL 226
+ +++RSL
Sbjct: 427 DQRSKERSL 435
>gi|61744481 solute carrier family 3, member 2 isoform e [Homo
sapiens]
Length = 568
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 158 PKVHWLRTQFPSLDIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNIC 217
P + W + FP DI G ANMTV G +SEDP S+++L R +
Sbjct: 425 PVMLWDESSFP--DIPG-------------AVSANMTVKG----QSEDPGSLLSLFRRLS 465
Query: 218 SEAAQKRSL 226
+ +++RSL
Sbjct: 466 DQRSKERSL 474
>gi|61744479 solute carrier family 3, member 2 isoform d [Homo
sapiens]
Length = 599
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 158 PKVHWLRTQFPSLDIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNIC 217
P + W + FP DI G ANMTV G +SEDP S+++L R +
Sbjct: 456 PVMLWDESSFP--DIPG-------------AVSANMTVKG----QSEDPGSLLSLFRRLS 496
Query: 218 SEAAQKRSL 226
+ +++RSL
Sbjct: 497 DQRSKERSL 505
>gi|65506891 solute carrier family 3, member 2 isoform c [Homo
sapiens]
Length = 630
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 158 PKVHWLRTQFPSLDIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNIC 217
P + W + FP DI G ANMTV G +SEDP S+++L R +
Sbjct: 487 PVMLWDESSFP--DIPG-------------AVSANMTVKG----QSEDPGSLLSLFRRLS 527
Query: 218 SEAAQKRSL 226
+ +++RSL
Sbjct: 528 DQRSKERSL 536
>gi|61744477 solute carrier family 3, member 2 isoform b [Homo
sapiens]
Length = 631
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 158 PKVHWLRTQFPSLDIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNIC 217
P + W + FP DI G ANMTV G +SEDP S+++L R +
Sbjct: 488 PVMLWDESSFP--DIPG-------------AVSANMTVKG----QSEDPGSLLSLFRRLS 528
Query: 218 SEAAQKRSL 226
+ +++RSL
Sbjct: 529 DQRSKERSL 537
>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
sapiens]
Length = 661
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 158 PKVHWLRTQFPSLDIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNIC 217
P + W + FP DI G ANMTV G +SEDP S+++L R +
Sbjct: 518 PVMLWDESSFP--DIPG-------------AVSANMTVKG----QSEDPGSLLSLFRRLS 558
Query: 218 SEAAQKRSL 226
+ +++RSL
Sbjct: 559 DQRSKERSL 567
>gi|155030194 RAP1, GTP-GDP dissociation stimulator 1 isoform 2
[Homo sapiens]
Length = 607
Score = 30.4 bits (67), Expect = 1.3
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 14 SDLANLGAKCLQMLDSGADYLHLDVMDGHFVP-NITFGHPVVESLRKQLGQDPFFDMHMM 72
++ A A C+ M+D+G +D++D H N+T H + +LR L M+
Sbjct: 342 ANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALR-NLAIPVINKAKML 400
Query: 73 VSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIKPGTSVEYLAPWA 132
+ + V +E F L T ++ D +E ++G +K VE L W
Sbjct: 401 SAGVTEAVLKFLKSEMPPVQFKLLGTLR---MLIDAQEAAEQLGKNVK---LVERLVEWC 454
Query: 133 NQIDMALVM 141
D A VM
Sbjct: 455 EAKDHAGVM 463
>gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor
[Homo sapiens]
Length = 1306
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 90 QYTFH---LEATENPGTLIK-DI---RENGMKVGLAIKPGTSVEYLAPWANQIDMALVMT 142
Q+ FH +A + G L K DI +E G ++ A+K G S PW + + +T
Sbjct: 1135 QFQFHEALCQAAGHTGPLHKCDIYQSKEAGQRLATAMKLGFS----RPWPEAMQL---IT 1187
Query: 143 VEPGFGEQKFMEDMMPKVHWLRTQ 166
+P + P + WLRT+
Sbjct: 1188 GQPNMSASAMLSYFKPLLDWLRTE 1211
>gi|23238214 angiotensin I converting enzyme 1 isoform 2 precursor
[Homo sapiens]
Length = 732
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 90 QYTFH---LEATENPGTLIK-DI---RENGMKVGLAIKPGTSVEYLAPWANQIDMALVMT 142
Q+ FH +A + G L K DI +E G ++ A+K G S PW + + +T
Sbjct: 561 QFQFHEALCQAAGHTGPLHKCDIYQSKEAGQRLATAMKLGFS----RPWPEAMQL---IT 613
Query: 143 VEPGFGEQKFMEDMMPKVHWLRTQ 166
+P + P + WLRT+
Sbjct: 614 GQPNMSASAMLSYFKPLLDWLRTE 637
>gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]
Length = 297
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 154 EDMMPKVHWLRTQFPSLDIEGDGGVGSDTV 183
E++ P L+ QFPS+ +E GG+ D +
Sbjct: 227 EELHPTATVLKAQFPSVAVEASGGITLDNL 256
>gi|155030202 RAP1, GTP-GDP dissociation stimulator 1 isoform 6
[Homo sapiens]
Length = 516
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 SDLANLGAKCLQMLDSGADYLHLDVMDGHFVP-NITFGHPVVESLR 58
++ A A C+ M+D+G +D++D H N+T H + +LR
Sbjct: 250 ANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALR 295
>gi|155030200 RAP1, GTP-GDP dissociation stimulator 1 isoform 5
[Homo sapiens]
Length = 558
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 SDLANLGAKCLQMLDSGADYLHLDVMDGHFVP-NITFGHPVVESLR 58
++ A A C+ M+D+G +D++D H N+T H + +LR
Sbjct: 292 ANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALR 337
>gi|155030198 RAP1, GTP-GDP dissociation stimulator 1 isoform 4
[Homo sapiens]
Length = 559
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 SDLANLGAKCLQMLDSGADYLHLDVMDGHFVP-NITFGHPVVESLR 58
++ A A C+ M+D+G +D++D H N+T H + +LR
Sbjct: 293 ANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALR 338
>gi|155030196 RAP1, GTP-GDP dissociation stimulator 1 isoform 3
[Homo sapiens]
Length = 607
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 SDLANLGAKCLQMLDSGADYLHLDVMDGHFVP-NITFGHPVVESLR 58
++ A A C+ M+D+G +D++D H N+T H + +LR
Sbjct: 341 ANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALR 386
>gi|155030192 RAP1, GTP-GDP dissociation stimulator 1 isoform 1
[Homo sapiens]
Length = 608
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 SDLANLGAKCLQMLDSGADYLHLDVMDGHFVP-NITFGHPVVESLR 58
++ A A C+ M+D+G +D++D H N+T H + +LR
Sbjct: 342 ANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALR 387
>gi|167900452 phospholipase C-like 1 isoform a [Homo sapiens]
Length = 1095
Score = 27.7 bits (60), Expect = 8.5
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 102 GTLIKDIRENGMK------VGLAIKPGTSVEYLAPWANQIDMALVMT------VEPGFGE 149
G + R NG+ +I G + E L AN D+A + V
Sbjct: 169 GKNTETFRNNGLADQICEDCAFSILHGENYESLDLVANSADVANIWVSGLRYLVSRSKQP 228
Query: 150 QKFMEDMM--PKVHWLRTQFPSLDIEGDGGVGSDT 182
FME P+ WL+T F + D++G+G + DT
Sbjct: 229 LDFMEGNQNTPRFMWLKTVFEAADVDGNGIMLEDT 263
>gi|167900450 phospholipase C-like 1 isoform b [Homo sapiens]
Length = 997
Score = 27.7 bits (60), Expect = 8.5
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 102 GTLIKDIRENGMK------VGLAIKPGTSVEYLAPWANQIDMALVMT------VEPGFGE 149
G + R NG+ +I G + E L AN D+A + V
Sbjct: 71 GKNTETFRNNGLADQICEDCAFSILHGENYESLDLVANSADVANIWVSGLRYLVSRSKQP 130
Query: 150 QKFMEDMM--PKVHWLRTQFPSLDIEGDGGVGSDT 182
FME P+ WL+T F + D++G+G + DT
Sbjct: 131 LDFMEGNQNTPRFMWLKTVFEAADVDGNGIMLEDT 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,713,326
Number of Sequences: 37866
Number of extensions: 370104
Number of successful extensions: 766
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 20
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.