Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF438 Sequence: fasta or formatted (828aa) NCBI GI: 219555729
Description:

zinc finger protein 438 isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [828aa] zinc finger protein 438 isoform a
alt mRNA [828aa] zinc finger protein 438 isoform a
alt prot [779aa] zinc finger protein 438 isoform c
alt prot [818aa] zinc finger protein 438 isoform b
alt prot [818aa] zinc finger protein 438 isoform b
alt mRNA [828aa] zinc finger protein 438 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         45           2
 C cysteine            2.8         23           2
 D aspartate           3.0         25           1
 E glutamate           6.2         51           2
 F phenylalanine       2.9         24           1
 G glycine             6.0         50           2
 H histidine           4.2         35           2
 I isoleucine          4.1         34           2
 K lysine              8.7         72           2
 L leucine             8.9         74           2
 M methionine          2.5         21           1
 N asparagine          4.6         38           2
 P proline             8.9         74           2
 Q glutamine           5.3         44           2
 R arginine            5.1         42           2
 S serine              9.9         82           3
 T threonine           4.7         39           2
 V valine              4.7         39           2
 W tryptophan          0.6          5           1
 Y tyrosine            1.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 438 isoform a 
ZNF438                1.000   zinc finger protein 438 isoform a 
ZNF438                1.000   zinc finger protein 438 isoform a 
ZNF438                1.000   zinc finger protein 438 isoform a 
ZNF438                0.985   zinc finger protein 438 isoform b 
ZNF438                0.985   zinc finger protein 438 isoform b 
ZNF438                0.944   zinc finger protein 438 isoform c 
ZNF451                0.028   zinc finger protein 451 isoform 1 
ZNF451                0.027   zinc finger protein 451 isoform 2 
BCL6                  0.027   B-cell lymphoma 6 protein isoform 1 
BCL6                  0.027   B-cell lymphoma 6 protein isoform 1 
ZBTB20                0.027   zinc finger and BTB domain containing 20 
ZNF582                0.026   zinc finger protein 582 
ZFAT                  0.026   zinc finger protein 406 isoform ZFAT-1 
ZFAT                  0.026   zinc finger protein 406 isoform TR-ZFAT 
ZSCAN5B               0.026   zinc finger and SCAN domain containing 5B 
ZNF766                0.026   zinc finger protein 766 
ZNF234                0.025   zinc finger protein 234 
ZNF234                0.025   zinc finger protein 234 
ZEB1                  0.025   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.025   zinc finger E-box binding homeobox 1 isoform b [Hom...
PRDM4                 0.025   PR domain containing 4 
ZNF57                 0.024   zinc finger protein 57 
ZNF776                0.024   zinc finger protein 776 
ZNF189                0.024   zinc finger protein 189 isoform 2 
ZNF189                0.024   zinc finger protein 189 isoform 1 
LOC729747             0.024   similar to zinc finger protein 709 
ZNF642                0.024   zinc finger protein 642 
CTCF                  0.024   CCCTC-binding factor 
ZNF852                0.024   PREDICTED: zinc finger protein 852 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press