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Search of human proteins with 217272833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217272833 nuclear transcription factor Y, gamma isoform 4
[Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217272833 nuclear transcription factor Y, gamma isoform 4 [Ho... 580 e-166
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom... 561 e-160
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho... 555 e-158
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho... 550 e-157
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho... 472 e-133
gi|4505389 nuclear transcription factor Y, alpha isoform 1 [Homo... 56 3e-08
gi|11496974 nuclear transcription factor Y, alpha isoform 2 [Hom... 52 6e-07
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 52 6e-07
gi|221139761 zinc finger protein 853 [Homo sapiens] 51 1e-06
gi|44890059 involucrin [Homo sapiens] 49 5e-06
gi|38788260 bromodomain PHD finger transcription factor isoform ... 47 2e-05
gi|38788274 bromodomain PHD finger transcription factor isoform ... 47 2e-05
gi|56549696 E1A binding protein p400 [Homo sapiens] 44 1e-04
gi|110347429 mediator complex subunit 12 [Homo sapiens] 44 2e-04
gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens] 44 2e-04
gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens] 44 2e-04
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 43 3e-04
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 43 3e-04
gi|148277037 AP2 associated kinase 1 [Homo sapiens] 43 3e-04
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 41 0.001
gi|4758010 clock [Homo sapiens] 40 0.002
gi|33286444 mastermind-like 2 [Homo sapiens] 40 0.002
gi|149999352 forkhead box P2 isoform II [Homo sapiens] 40 0.002
gi|93141033 PAX interacting protein 1 [Homo sapiens] 39 0.004
gi|38570099 glutamine-rich 1 [Homo sapiens] 39 0.004
gi|38570097 glutamine-rich 1 [Homo sapiens] 39 0.004
gi|22538413 forkhead box P2 isoform III [Homo sapiens] 39 0.007
gi|4507379 TATA box binding protein [Homo sapiens] 38 0.009
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 38 0.009
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 38 0.009
>gi|217272833 nuclear transcription factor Y, gamma isoform 4 [Homo
sapiens]
Length = 297
Score = 580 bits (1496), Expect = e-166
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKR 60
MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKR
Sbjct: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKR 60
Query: 61 NDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQ 120
NDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQ
Sbjct: 61 NDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQ 120
Query: 121 GQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSG 180
GQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSG
Sbjct: 121 GQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSG 180
Query: 181 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQIT 240
TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQIT
Sbjct: 181 TGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQIT 240
Query: 241 QTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 297
QTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
Sbjct: 241 QTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 297
>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
sapiens]
Length = 335
Score = 561 bits (1447), Expect = e-160
Identities = 297/335 (88%), Positives = 297/335 (88%), Gaps = 38/335 (11%)
Query: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK- 59
MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK
Sbjct: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM 60
Query: 60 -------------------------------------RNDIAMAITKFDQFDFLIDIVPR 82
RNDIAMAITKFDQFDFLIDIVPR
Sbjct: 61 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR 120
Query: 83 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 142
DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
Sbjct: 121 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 180
Query: 143 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 202
AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
Sbjct: 181 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 240
Query: 203 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ 262
VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
Sbjct: 241 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ 300
Query: 263 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 297
IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
Sbjct: 301 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 335
>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
sapiens]
Length = 334
Score = 555 bits (1430), Expect = e-158
Identities = 296/335 (88%), Positives = 296/335 (88%), Gaps = 39/335 (11%)
Query: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK- 59
MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK
Sbjct: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM 60
Query: 60 -------------------------------------RNDIAMAITKFDQFDFLIDIVPR 82
RNDIAMAITKFDQFDFLIDIVPR
Sbjct: 61 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR 120
Query: 83 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 142
DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
Sbjct: 121 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 180
Query: 143 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 202
AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
Sbjct: 181 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 240
Query: 203 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ 262
VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDG QLYQ
Sbjct: 241 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDG-QLYQ 299
Query: 263 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 297
IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
Sbjct: 300 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 334
>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
sapiens]
Length = 354
Score = 550 bits (1417), Expect = e-157
Identities = 297/354 (83%), Positives = 297/354 (83%), Gaps = 57/354 (16%)
Query: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK- 59
MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK
Sbjct: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM 60
Query: 60 -------------------------------------RNDIAMAITKFDQFDFLIDIVPR 82
RNDIAMAITKFDQFDFLIDIVPR
Sbjct: 61 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR 120
Query: 83 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 142
DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
Sbjct: 121 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 180
Query: 143 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 202
AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
Sbjct: 181 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 240
Query: 203 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQ-------------------QITQTE 243
VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQ QITQTE
Sbjct: 241 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQGQRNASQGKPRRCLKETLQITQTE 300
Query: 244 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 297
VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
Sbjct: 301 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 354
>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
sapiens]
Length = 301
Score = 472 bits (1215), Expect = e-133
Identities = 262/335 (78%), Positives = 262/335 (78%), Gaps = 72/335 (21%)
Query: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK- 59
MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVK
Sbjct: 1 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM 60
Query: 60 -------------------------------------RNDIAMAITKFDQFDFLIDIVPR 82
RNDIAMAITKFDQFDFLIDIVPR
Sbjct: 61 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR 120
Query: 83 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 142
DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
Sbjct: 121 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII 180
Query: 143 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 202
A QPQ GQTMQVMQQIITNTGEIQQIP
Sbjct: 181 A-------------------------QPQ---------QGQTMQVMQQIITNTGEIQQIP 206
Query: 203 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ 262
VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
Sbjct: 207 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ 266
Query: 263 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 297
IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
Sbjct: 267 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD 301
>gi|4505389 nuclear transcription factor Y, alpha isoform 1 [Homo
sapiens]
Length = 347
Score = 56.2 bits (134), Expect = 3e-08
Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 112 QQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQ 171
QQ VQ Q + Q ++S +Q Q++ QP Q + + GQ + +VQA P
Sbjct: 26 QQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPLMVQVSGGQLITSTGQPI-MVQAVPG 84
Query: 172 GQAQQAQSGTGQTMQVMQQI-ITNTGEIQ-----QIPVQLNAGQLQYIRLAQPVSGTQVV 225
GQ Q Q +QQI + G+IQ + VQ GQ Q I + QP
Sbjct: 85 GQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQP------- 137
Query: 226 QGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQL-YQ--------IQQVTMPAGQDLAQ 276
QT T Q TQ ++ QQ +Q +GQ + YQ +QQVT+P +
Sbjct: 138 ----QTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITI 193
Query: 277 P 277
P
Sbjct: 194 P 194
Score = 47.4 bits (111), Expect = 2e-05
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 109 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 168
T+ Q P + QG QQ Q IQ GQ + Q QQGQT QI+
Sbjct: 89 TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ------------QIIIQ 135
Query: 169 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI---PVQLNAGQLQYIRL---------A 216
QPQ Q+ T Q + V Q + T E Q I PV + LQ + + A
Sbjct: 136 QPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPA 195
Query: 217 QPVSGTQVVQGQIQTLATNAQQITQT 242
++G Q+VQ T T++ Q T T
Sbjct: 196 ASLAGAQIVQTGANTNTTSSGQGTVT 221
>gi|11496974 nuclear transcription factor Y, alpha isoform 2 [Homo
sapiens]
Length = 318
Score = 52.0 bits (123), Expect = 6e-07
Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 38/179 (21%)
Query: 122 QQQGQQTTSSTTTI--QPGQIIIAQPQQGQTTPVTMQVGEGQQVQ------IVQAQPQGQ 173
+Q + SST I Q GQI QQ Q P+ +QV GQ + +VQA P GQ
Sbjct: 2 EQYTANSNSSTEQIVVQAGQI----QQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQ 57
Query: 174 AQQAQSGTGQTMQVMQQI-ITNTGEIQ-----QIPVQLNAGQLQYIRLAQPVSGTQVVQG 227
Q Q +QQI + G+IQ + VQ GQ Q I + QP
Sbjct: 58 GQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQP--------- 108
Query: 228 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQQL-YQ--------IQQVTMPAGQDLAQP 277
QT T Q TQ ++ QQ +Q +GQ + YQ +QQVT+P + P
Sbjct: 109 --QTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIP 165
Score = 47.4 bits (111), Expect = 2e-05
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 109 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 168
T+ Q P + QG QQ Q IQ GQ + Q QQGQT QI+
Sbjct: 60 TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ------------QIIIQ 106
Query: 169 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI---PVQLNAGQLQYIRL---------A 216
QPQ Q+ T Q + V Q + T E Q I PV + LQ + + A
Sbjct: 107 QPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPA 166
Query: 217 QPVSGTQVVQGQIQTLATNAQQITQT 242
++G Q+VQ T T++ Q T T
Sbjct: 167 ASLAGAQIVQTGANTNTTSSGQGTVT 192
Score = 45.4 bits (106), Expect = 6e-05
Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 35/186 (18%)
Query: 118 QVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQ--VGEGQQVQIVQAQPQGQAQ 175
QVQGQ Q + GQ I+ Q G MQ V Q +Q +Q P GQ
Sbjct: 25 QVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQI- 83
Query: 176 QAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQT---L 232
Q Q G Q + VQ GQ Q I + QP T V GQ QT +
Sbjct: 84 QIQGG------------------QAVQVQGQQGQTQQIIIQQP--QTAVTAGQTQTQQQI 123
Query: 233 ATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQ-----QVTMPAGQDLAQPMFIQ---SAN 284
A QQ+ QT Q DG L Q+ +T+PA LA +Q + N
Sbjct: 124 AVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAA-SLAGAQIVQTGANTN 182
Query: 285 QPSDGQ 290
S GQ
Sbjct: 183 TTSSGQ 188
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 52.0 bits (123), Expect = 6e-07
Identities = 55/218 (25%), Positives = 82/218 (37%), Gaps = 23/218 (10%)
Query: 81 PRDELKPPKRQEEVRQSVTPAEP---------VQYYFTLAQQPTAVQVQGQQQGQQTTSS 131
P+ + P Q + Q ++P P Q Q P A+ QG + T S
Sbjct: 3773 PQGLMPPSSHQGLLVQQLSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQS 3832
Query: 132 TTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQI 191
P +AQ QG G ++ Q Q Q Q Q Q + Q +
Sbjct: 3833 RVLSSPQ---LAQQGQGLM---------GHRLVTAQQQQQQQQHQQQGSMAGLSHLQQSL 3880
Query: 192 ITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQF 251
++++G+ + + G LQ ++ Q + Q +Q Q Q QQ+ Q ++QQ QQQ
Sbjct: 3881 MSHSGQPKLSAQPM--GSLQQLQQQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQQ 3938
Query: 252 SQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDG 289
QQ Q QQ + Q Q F Q Q G
Sbjct: 3939 QLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQQQQQQMG 3976
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/187 (31%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQP---------TAVQVQGQQQGQQTTSSTTTIQPG 138
P RQ + QS + P LAQQ TA Q Q QQQ QQ S
Sbjct: 3823 PHRQVLMTQSRVLSSP-----QLAQQGQGLMGHRLVTAQQQQQQQQHQQQGSMAGLSHLQ 3877
Query: 139 QIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEI 198
Q +++ Q + + AQP G QQ Q Q Q+ QQ +
Sbjct: 3878 QSLMSHSGQPK----------------LSAQPMGSLQQLQ----QQQQLQQQQQLQQQQQ 3917
Query: 199 QQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ 258
QQ+ Q QLQ +L Q Q+ Q Q Q L QQ+ Q + QQ QQQF Q Q
Sbjct: 3918 QQLQQQQ---QLQQQQLQQQQQQQQLQQQQQQQLQQQQQQLQQQQQQQ-QQQFQQQQQQQ 3973
Query: 259 QLYQIQQ 265
Q+ + Q
Sbjct: 3974 QMGLLNQ 3980
Score = 35.4 bits (80), Expect = 0.061
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 112 QQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQ 171
QQ Q Q QQQ QQ +Q Q+ Q QQ +Q + QQ+Q Q Q Q
Sbjct: 3903 QQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQQ------QLQQQQQQQLQQQQQQLQ 3956
Query: 172 GQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQL 210
Q QQ Q Q Q Q + N P Q Q+
Sbjct: 3957 QQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQQQQQQQV 3995
Score = 33.1 bits (74), Expect = 0.30
Identities = 55/208 (26%), Positives = 77/208 (37%), Gaps = 19/208 (9%)
Query: 77 IDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQ 136
+ +V + K K+ ++VR+ + + QQ Q Q QQQ QQ S+ +
Sbjct: 3564 LKLVTEQQSKIQKQLDQVRKQQKEHTNLMAEYRNKQQQ---QQQQQQQQQQQHSAVLALS 3620
Query: 137 PGQ---IIIAQPQQGQTTP----VTMQVGEGQQVQIVQAQPQGQAQQAQSG-----TGQT 184
P Q ++ P GQ P Q G Q ++ P G A Q G T
Sbjct: 3621 PSQSPRLLTKLP--GQLLPGHGLQPPQGPPGGQAGGLRLTPGGMALPGQPGGPFLNTALA 3678
Query: 185 MQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEV 244
Q QQ G + G L +R P S + + Q+Q Q + +
Sbjct: 3679 QQQQQQHSGGAGSLAGPSGGFFPGNLA-LRSLGPDSRL-LQERQLQLQQQRMQLAQKLQQ 3736
Query: 245 QQGQQQFSQFTDGQQLYQIQQVTMPAGQ 272
QQ QQQ Q GQ Q QQ P Q
Sbjct: 3737 QQQQQQQQQHLLGQVAIQQQQQQGPGVQ 3764
Score = 31.2 bits (69), Expect = 1.1
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 81 PRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTT-IQPGQ 139
P L+ ++Q++++Q + Q QQ Q+Q QQQ QQ +Q Q
Sbjct: 3893 PMGSLQQLQQQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQ 3952
Query: 140 IIIAQPQQGQTTPVTMQVGEGQ-----QVQIVQAQPQGQAQQAQSGTGQTMQVMQ 189
+ Q QQ Q Q + Q Q + + + Q Q QQ G G + +Q
Sbjct: 3953 QQLQQQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQQQQQQQVALGPGMPAKPLQ 4007
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 51.2 bits (121), Expect = 1e-06
Identities = 68/230 (29%), Positives = 95/230 (41%), Gaps = 24/230 (10%)
Query: 83 DELKPPKRQEEVRQSVTPAEPVQY-YFTLAQQPTA---VQVQGQQQGQQTTSSTTT---- 134
+E +P +R+ +++Q EP Q QQP +Q Q QQ GQQ S
Sbjct: 80 EETRPGQRELQLQQLEQQPEPQQQPQHEQLQQPQPHLELQQQPQQDGQQQLSQLQQEKHQ 139
Query: 135 ------IQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVM 188
++P ++ Q QQ Q QV E Q++Q Q Q Q Q Q Q Q Q+
Sbjct: 140 SVHHQELKPELQLMHQQQQLQP----QQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQLQ 195
Query: 189 QQIITNTGEIQQIPVQLNAGQL----QYIRLAQPVSGTQVVQGQIQTLATNAQ-QITQTE 243
QQ+ +QQ QL QL + ++ Q + +Q Q Q L Q Q+ Q
Sbjct: 196 QQV-QEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQL 254
Query: 244 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQ 293
+QQ Q Q Q QQ Q+QQ + Q+ Q Q Q Q Q
Sbjct: 255 LQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQQ 304
Score = 49.3 bits (116), Expect = 4e-06
Identities = 61/199 (30%), Positives = 81/199 (40%), Gaps = 22/199 (11%)
Query: 84 ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIA 143
+L+ K Q Q + P + + QP VQ Q + Q QQ T Q Q++
Sbjct: 132 QLQQEKHQSVHHQELKPELQLMHQ-QQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQ 190
Query: 144 QPQQGQTTP----VTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQ 199
Q Q Q + Q + QQ Q++Q Q Q Q QQ Q Q Q+ QQ Q
Sbjct: 191 QEQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQ---QQEQLQQQ--------Q 239
Query: 200 QIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQ 259
Q+ + GQLQ L Q Q Q Q Q L Q+ Q + Q Q+Q Q QQ
Sbjct: 240 QLLLLQQQGQLQQQLLQQ-----QQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQ-QQQQQ 293
Query: 260 LYQIQQVTMPAGQDLAQPM 278
L Q QQ + Q P+
Sbjct: 294 LLQQQQEQLQQQQLQPPPL 312
>gi|44890059 involucrin [Homo sapiens]
Length = 585
Score = 48.9 bits (115), Expect = 5e-06
Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 84 ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIA 143
+L+ P++QE Q P + QQ +++ QQ+GQ Q GQ+ +
Sbjct: 222 QLELPEQQEG--QLELPQQQEGQLELSEQQEGQLELSEQQEGQLKHLEH---QEGQLEVP 276
Query: 144 QPQQGQTTPVTMQVGEGQQVQIVQAQPQ------GQAQQAQSGTGQTMQVMQQIITNTGE 197
+ Q GQ + Q G+ + + + QP+ GQ + + GQ + QQ G+
Sbjct: 277 EEQMGQLKYLEQQEGQLKHLDQQEKQPELPEQQMGQLKHLEQQEGQPKHLEQQ----EGQ 332
Query: 198 IQQIPVQLNAGQLQYIRLAQ-PVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTD 256
++Q+ Q GQL+++ + + + +GQ+ Q+ Q E QQGQ + + +
Sbjct: 333 LEQLEEQ--EGQLKHLEQQEGQLEHLEHQEGQLGLPEQQVLQLKQLEKQQGQPKHLEEEE 390
Query: 257 GQQLYQIQQ 265
GQ + +QQ
Sbjct: 391 GQLKHLVQQ 399
Score = 46.6 bits (109), Expect = 3e-05
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 84 ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIA 143
+L+ P++QE Q P + QQ +++ QQ+GQ S Q GQ+ ++
Sbjct: 202 QLELPEQQEG--QLELPEQQEGQLELPEQQEGQLELPQQQEGQLELSEQ---QEGQLELS 256
Query: 144 QPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPV 203
+ Q+GQ + Q G Q+++ + Q GQ + + GQ + QQ E Q
Sbjct: 257 EQQEGQLKHLEHQEG---QLEVPEEQ-MGQLKYLEQQEGQLKHLDQQ------EKQPELP 306
Query: 204 QLNAGQLQYIRL--AQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDG---- 257
+ GQL+++ QP Q +GQ++ L Q+ E Q+GQ + + +G
Sbjct: 307 EQQMGQLKHLEQQEGQPKHLEQQ-EGQLEQLEEQEGQLKHLEQQEGQLEHLEHQEGQLGL 365
Query: 258 --QQLYQIQQVTMPAGQ 272
QQ+ Q++Q+ GQ
Sbjct: 366 PEQQVLQLKQLEKQQGQ 382
Score = 39.3 bits (90), Expect = 0.004
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 84 ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIA 143
+LK +QE +Q P + + L QQ + QQ+GQ Q GQ+
Sbjct: 292 QLKHLDQQE--KQPELPEQQMGQLKHLEQQEGQPKHLEQQEGQLEQLEE---QEGQLKHL 346
Query: 144 QPQQGQTTPVTMQVG-----EGQQVQIVQAQPQ-GQAQQAQSGTGQTMQVMQQIITNTGE 197
+ Q+GQ + Q G E Q +Q+ Q + Q GQ + + GQ ++QQ
Sbjct: 347 EQQEGQLEHLEHQEGQLGLPEQQVLQLKQLEKQQGQPKHLEEEEGQLKHLVQQ------- 399
Query: 198 IQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDG 257
GQL++ L Q + + Q++ L Q+ E Q+GQ + + G
Sbjct: 400 ---------EGQLKH--LVQQEGQLEQQERQVEHLEQQVGQLKHLEEQEGQLKHLEQQQG 448
Query: 258 QQLYQIQQVTMP 269
Q QQV P
Sbjct: 449 QLEVPEQQVGQP 460
Score = 35.0 bits (79), Expect = 0.079
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 117 VQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGE--------GQQVQIVQA 168
VQ +GQ + Q+ Q GQ+ + Q+GQ + Q G+ GQ + Q
Sbjct: 407 VQQEGQLEQQERQVEHLEQQVGQLKHLEEQEGQLKHLEQQQGQLEVPEQQVGQPKNLEQE 466
Query: 169 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQP-VSGTQVVQG 227
+ Q + + Q G + ++ + + ++P Q GQ +++ + + + G
Sbjct: 467 EKQLELPEQQEGQVKHLEKQEAQL-------ELPEQ-QVGQPKHLEQQEKHLEHPEQQDG 518
Query: 228 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQ 285
Q++ L Q+ E Q+GQ + F Q Q +P ++ P+ Q Q
Sbjct: 519 QLKHLEQQEGQLKDLEQQKGQLEQPVFAPAPGQVQDIQPALPTKGEVLLPVEHQQQKQ 576
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 47.0 bits (110), Expect = 2e-05
Identities = 56/219 (25%), Positives = 85/219 (38%), Gaps = 31/219 (14%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQ 147
P ++V + +PV T P V Q+ + +ST+ IQ +PQQ
Sbjct: 2212 PGAPQQVMTQIIRGQPVS---TAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRPQQ 2268
Query: 148 GQTTPVTMQVGE------GQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI 201
GQ Q+ + G Q V Q QGQ TGQ + Q + G QQ+
Sbjct: 2269 GQVKLTMAQLTQLTQGHGGNQGLTVVIQGQGQT------TGQLQLIPQGVTVLPGPGQQL 2322
Query: 202 -PVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQL 260
+ G +Q L P++ T T +T ++ T G+Q+ S+ + Q+
Sbjct: 2323 MQAAMPNGTVQRF-LFTPLATTAT------TASTTTTTVSTTAAGTGEQRQSKLSPQMQV 2375
Query: 261 YQIQQVTMPAGQDL------AQPMFIQSANQPSDGQAPQ 293
+ Q T+P Q AQP Q + QP PQ
Sbjct: 2376 H--QDKTLPPAQSSSVGPAEAQPQTAQPSAQPQPQTQPQ 2412
Score = 32.7 bits (73), Expect = 0.39
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 112 QQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTP-----VTMQVGEGQQVQIV 166
Q+PT + T+S+T+TI P Q ++ P G T +T +VG V
Sbjct: 2049 QKPTVIATSTTSP---TSSTTSTISPAQKVMVAPISGSVTTGTKMVLTTKVGSPATVTFQ 2105
Query: 167 QAQPQGQ-----AQQAQSGTGQTMQVMQQII----TNTGEIQQ 200
Q + Q +Q QS +G +QV Q+++ ++TG QQ
Sbjct: 2106 QNKNFHQTFATWVKQGQSNSG-VVQVQQKVLGIIPSSTGTSQQ 2147
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 47.0 bits (110), Expect = 2e-05
Identities = 56/219 (25%), Positives = 85/219 (38%), Gaps = 31/219 (14%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQ 147
P ++V + +PV T P V Q+ + +ST+ IQ +PQQ
Sbjct: 2086 PGAPQQVMTQIIRGQPVS---TAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRPQQ 2142
Query: 148 GQTTPVTMQVGE------GQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI 201
GQ Q+ + G Q V Q QGQ TGQ + Q + G QQ+
Sbjct: 2143 GQVKLTMAQLTQLTQGHGGNQGLTVVIQGQGQT------TGQLQLIPQGVTVLPGPGQQL 2196
Query: 202 -PVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQL 260
+ G +Q L P++ T T +T ++ T G+Q+ S+ + Q+
Sbjct: 2197 MQAAMPNGTVQRF-LFTPLATTAT------TASTTTTTVSTTAAGTGEQRQSKLSPQMQV 2249
Query: 261 YQIQQVTMPAGQDL------AQPMFIQSANQPSDGQAPQ 293
+ Q T+P Q AQP Q + QP PQ
Sbjct: 2250 H--QDKTLPPAQSSSVGPAEAQPQTAQPSAQPQPQTQPQ 2286
Score = 46.2 bits (108), Expect = 3e-05
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 26/193 (13%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQ-QTTSSTTTIQPGQ----III 142
P +Q +V+ + + P+Q + +L + QGQ Q Q Q SST T+ GQ + +
Sbjct: 2361 PGQQSQVQTTTSQPIPIQPHTSLQ-----IPSQGQPQSQPQVQSSTQTLSSGQTLNQVTV 2415
Query: 143 AQP-----QQGQTTPVTMQVGE-GQQVQI---VQAQPQGQAQQAQSGTGQTMQVMQQIIT 193
+ P Q Q P + V + QQVQ+ +Q+Q Q Q QSG Q +++ I
Sbjct: 2416 SSPSRPQLQIQQPQPQVIAVPQLQQQVQVLSQIQSQVVAQIQAQQSGVPQQIKLQLPI-- 2473
Query: 194 NTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQ 253
+IQQ + Q+Q + Q S + +Q ++Q L Q+ Q +++ ++ Q
Sbjct: 2474 ---QIQQSSA-VQTHQIQNVVTVQAASVQEQLQ-RVQQLRDQQQKKKQQQIEIKREHTLQ 2528
Query: 254 FTDGQQLYQIQQV 266
++ ++ Q Q V
Sbjct: 2529 ASNQSEIIQKQVV 2541
Score = 32.7 bits (73), Expect = 0.39
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 112 QQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTP-----VTMQVGEGQQVQIV 166
Q+PT + T+S+T+TI P Q ++ P G T +T +VG V
Sbjct: 1923 QKPTVIATSTTSP---TSSTTSTISPAQKVMVAPISGSVTTGTKMVLTTKVGSPATVTFQ 1979
Query: 167 QAQPQGQ-----AQQAQSGTGQTMQVMQQII----TNTGEIQQ 200
Q + Q +Q QS +G +QV Q+++ ++TG QQ
Sbjct: 1980 QNKNFHQTFATWVKQGQSNSG-VVQVQQKVLGIIPSSTGTSQQ 2021
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 44.3 bits (103), Expect = 1e-04
Identities = 62/226 (27%), Positives = 86/226 (38%), Gaps = 27/226 (11%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQ 147
P Q + + + P LA+ P T+ + + I QPQ+
Sbjct: 2854 PTSQLQAQGQMQTQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAGISVAIGQPQK 2913
Query: 148 --GQTT---PVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP 202
GQT PV MQ + Q VQ Q Q Q AQ ++ Q IT G Q++
Sbjct: 2914 AAGQTVVAQPVHMQQLLKLKQQAVQQQKAIQPQAAQGPAAVQQKITAQQITTPGAQQKVA 2973
Query: 203 VQLN-AGQLQY----IRLAQPVSGTQVVQGQI-----------QTLATNAQQITQTEVQQ 246
A + Q+ I AQ ++G Q VQ QI QT + QQ+ Q
Sbjct: 2974 YAAQPALKTQFLTTPISQAQKLAGAQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQA 3033
Query: 247 GQQ--QFSQFT-DGQQLYQIQQVTMPA---GQDLAQPMFIQSANQP 286
Q +Q T GQQ+ I VT A Q L Q + +A+ P
Sbjct: 3034 SPQTVALTQATAAGQQVQMIPAVTATAQVVQQKLIQQQVVTTASAP 3079
Score = 43.9 bits (102), Expect = 2e-04
Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 33/202 (16%)
Query: 90 RQEEVRQSVTPAEPVQYYFTLAQQPTA-VQVQGQQQGQQTTSSTTTI---QPGQIIIAQP 145
+ ++ + + P P + QPTA VQVQ Q QQ + TT+ +PG ++
Sbjct: 2782 KMQKQKLQMPPQPPPPQAQSAPPQPTAQVQVQTSQPPQQQSPQLTTVTAPRPGALLTG-- 2839
Query: 146 QQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQL 205
TT +QV +V Q Q QGQ Q Q +++ + P
Sbjct: 2840 ----TTVANLQVARLTRVPTSQLQAQGQMQTQAPQPAQVALAKPPVVSVPAAVVSSP--- 2892
Query: 206 NAGQLQYIRLAQPVSGTQVVQGQIQTLA--------TNAQQITQTEVQQGQQQFS---QF 254
L V+G V GQ Q A + QQ+ + + Q QQQ + Q
Sbjct: 2893 -----GVTTLPMNVAGISVAIGQPQKAAGQTVVAQPVHMQQLLKLKQQAVQQQKAIQPQA 2947
Query: 255 TDG----QQLYQIQQVTMPAGQ 272
G QQ QQ+T P Q
Sbjct: 2948 AQGPAAVQQKITAQQITTPGAQ 2969
Score = 33.1 bits (74), Expect = 0.30
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 80 VPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQ 139
+ ++ P Q++V + PA Q+ T Q A ++ G QQ Q T IQ +
Sbjct: 2958 ITAQQITTPGAQQKVAYAAQPALKTQFLTTPISQ--AQKLAGAQQVQ------TQIQVAK 3009
Query: 140 IIIAQPQQGQTTPVT--MQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGE 197
+ QQ TPV QV Q QA PQ A + GQ +Q++ +
Sbjct: 3010 LPQVVQQQ---TPVASIQQVASASQ----QASPQTVALTQATAAGQQVQMIPAVTATAQV 3062
Query: 198 IQQIPVQ 204
+QQ +Q
Sbjct: 3063 VQQKLIQ 3069
Score = 31.2 bits (69), Expect = 1.1
Identities = 52/174 (29%), Positives = 64/174 (36%), Gaps = 14/174 (8%)
Query: 97 SVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQ 156
SVT + V T Q P V Q TI P + + QQ Q Q
Sbjct: 2671 SVTASAVVTTNLTPVQTPARSLVPQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQ 2730
Query: 157 VGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNA-GQLQYIRL 215
+ QQ Q Q Q QQ Q+ T +QV Q G+ Q P Q+ A G+L L
Sbjct: 2731 QQQQQQQQQQQ-----QQQQQQTTTTSQVQVPQ----IQGQAQS-PAQIKAVGKLTPEHL 2780
Query: 216 AQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMP 269
+ Q +Q Q AQ Q Q Q SQ QQ Q+ VT P
Sbjct: 2781 IK--MQKQKLQMPPQPPPPQAQSAPPQPTAQVQVQTSQ-PPQQQSPQLTTVTAP 2831
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 43.9 bits (102), Expect = 2e-04
Identities = 59/217 (27%), Positives = 78/217 (35%), Gaps = 34/217 (15%)
Query: 81 PRDELKPPKRQEEVRQSVTPA------EPVQYYFTLAQQPTA-VQVQGQQQGQQTTSSTT 133
P + PP + QS P+ +P ++ L Q+P+ V Q G TS+
Sbjct: 1959 PAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRH---LQQRPSGYVHQQAPTYGHGLTSTQR 2015
Query: 134 TIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIIT 193
Q + P TP++ Q G V+ P+ Q QQ Q Q Q QQ
Sbjct: 2016 FSH--QTLQQTPMISTMTPMSAQ-GVQAGVRSTAILPEQQQQQQQQQQQQQQQQQQQ--- 2069
Query: 194 NTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQ 253
Q Q +IR Q Q QI QQ Q + QQ QQQ Q
Sbjct: 2070 ----------QQQQQQQYHIRQQQ--------QQQILRQQQQQQQQQQQQQQQQQQQQQQ 2111
Query: 254 FTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQ 290
Q Q QQ P Q +QP F + Q + Q
Sbjct: 2112 QQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQ 2148
Score = 40.0 bits (92), Expect = 0.002
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 89 KRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQG 148
++Q++ +Q + QY+ QQ ++ Q QQQ QQ Q QQ
Sbjct: 2060 QQQQQQQQQQQQQQQQQYHIRQQQQQQILRQQQQQQQQQQQQQQ----------QQQQQQ 2109
Query: 149 QTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAG 208
Q Q + QQ Q QPQ Q Q + G QT Q Q ++Q+ QL+
Sbjct: 2110 QQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQ----TAALVRQLQQQLSNT 2165
Query: 209 QLQ 211
Q Q
Sbjct: 2166 QPQ 2168
Score = 37.7 bits (86), Expect = 0.012
Identities = 39/127 (30%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 118 QVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQA 177
Q Q QQQ QQ Q Q I Q QQ Q QQ Q Q Q Q Q QQ
Sbjct: 2055 QQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQILR--------QQQQQQQQQQQQQQQQQ 2106
Query: 178 QSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQ 237
Q Q Q QQ Q P Q Q ++ Q T + Q+Q +N Q
Sbjct: 2107 QQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQ 2166
Query: 238 QITQTEV 244
T +
Sbjct: 2167 PQPSTNI 2173
Score = 30.4 bits (67), Expect = 2.0
Identities = 35/128 (27%), Positives = 43/128 (33%), Gaps = 11/128 (8%)
Query: 166 VQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVV 225
+Q +P G Q G + Q+ T +QQ P+ I P+S V
Sbjct: 1991 LQQRPSGYVHQQAPTYGHGLTSTQRFSHQT--LQQTPM---------ISTMTPMSAQGVQ 2039
Query: 226 QGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQ 285
G T QQ Q + QQ QQQ Q QQ Q Q L Q Q Q
Sbjct: 2040 AGVRSTAILPEQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQILRQQQQQQQQQQ 2099
Query: 286 PSDGQAPQ 293
Q Q
Sbjct: 2100 QQQQQQQQ 2107
>gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens]
Length = 713
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 126 QQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQP---QGQAQQAQSGTG 182
QQ T+S TT GQ+ + Q + + Q +Q+ AQP Q Q++Q T
Sbjct: 282 QQNTNSLTT-SSGQVHSSDLQGNYIQSPVSEETQAQNIQVSTAQPVVQHLQLQESQQPTS 340
Query: 183 QTMQVMQQIITNT-GEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQ 241
Q Q++Q I T +Q ++ LQ ++L Q GT ++Q QT+ + Q Q
Sbjct: 341 QA-QIVQGITPQTIHGVQASGQNISQQALQNLQL-QLNPGTFLIQA--QTVTPSGQVTWQ 396
Query: 242 TEVQQGQQQFS----QFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQV 294
T QG Q Q T QQ+ T+ GQ A F + S GQ P +
Sbjct: 397 TFQVQGVQNLQNLQIQNTAAQQITLTPVQTLTLGQVAAGGAFTSTPVSLSTGQLPNL 453
>gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens]
Length = 781
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 126 QQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQP---QGQAQQAQSGTG 182
QQ T+S TT GQ+ + Q + + Q +Q+ AQP Q Q++Q T
Sbjct: 350 QQNTNSLTT-SSGQVHSSDLQGNYIQSPVSEETQAQNIQVSTAQPVVQHLQLQESQQPTS 408
Query: 183 QTMQVMQQIITNT-GEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQ 241
Q Q++Q I T +Q ++ LQ ++L Q GT ++Q QT+ + Q Q
Sbjct: 409 QA-QIVQGITPQTIHGVQASGQNISQQALQNLQL-QLNPGTFLIQA--QTVTPSGQVTWQ 464
Query: 242 TEVQQGQQQFS----QFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQV 294
T QG Q Q T QQ+ T+ GQ A F + S GQ P +
Sbjct: 465 TFQVQGVQNLQNLQIQNTAAQQITLTPVQTLTLGQVAAGGAFTSTPVSLSTGQLPNL 521
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 43.1 bits (100), Expect = 3e-04
Identities = 62/213 (29%), Positives = 80/213 (37%), Gaps = 14/213 (6%)
Query: 85 LKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQ 144
L+ ++Q++ +Q +Q F Q Q Q QQQ QQ Q I Q
Sbjct: 177 LQQQQQQQQQQQFQAQQSAMQQQFQAVVQQ---QQQLQQQQQQQQHLIKLHHQNQQQIQQ 233
Query: 145 PQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQ 204
QQ +Q+ + QQ Q Q Q Q QA QAQ Q MQQ Q +P Q
Sbjct: 234 QQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQPPIQQ--PPMQQ--PQPPPSQALPQQ 289
Query: 205 LNAGQLQYIRLAQPVSGTQ---VVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLY 261
L Q+ + + QP Q V Q Q L +Q TQ V Q Q Q Q
Sbjct: 290 LQ--QMHHTQHHQPPPQPQQPPVAQNQPSQLPPQSQ--TQPLVSQAQALPGQMLYTQPPL 345
Query: 262 QIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQV 294
+ + M Q QP Q QA Q+
Sbjct: 346 KFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQM 378
Score = 38.1 bits (87), Expect = 0.009
Identities = 44/154 (28%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 148 GQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNA 207
GQ P T + + A PQ Q Q Q Q Q Q +QQ Q
Sbjct: 127 GQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQ 186
Query: 208 GQLQYIRLAQPVSGTQVVQGQIQTLATNAQQ--------ITQTEVQQGQQQFSQFTDGQQ 259
Q Q + A VVQ Q Q QQ Q ++QQ QQQ + Q
Sbjct: 187 QQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQ-LQ 245
Query: 260 LYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQ 293
L Q QQ Q Q + Q Q Q PQ
Sbjct: 246 LQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQ 279
Score = 37.4 bits (85), Expect = 0.016
Identities = 55/210 (26%), Positives = 72/210 (34%), Gaps = 23/210 (10%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQ 147
P+ Q +++Q + Q F QQ Q Q QQQ QQ + + +Q QQ
Sbjct: 149 PQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQ---------QQ 199
Query: 148 GQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNA 207
Q V + QQ+Q Q Q Q + Q Q QQ+ Q QL
Sbjct: 200 FQAV-----VQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQL--------QRIAQLQL 246
Query: 208 GQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVT 267
Q Q + Q Q +Q Q QQ Q QQ Q Q Q
Sbjct: 247 QQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQ 306
Query: 268 M-PAGQDLAQPMFIQSANQPSDGQAPQVTG 296
P Q+ + QS QP QA + G
Sbjct: 307 QPPVAQNQPSQLPPQSQTQPLVSQAQALPG 336
Score = 35.0 bits (79), Expect = 0.079
Identities = 60/233 (25%), Positives = 83/233 (35%), Gaps = 41/233 (17%)
Query: 89 KRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQ--QGQQTTSSTTTIQPGQIIIAQ-- 144
++Q++ +Q++ P+Q QP Q QQ Q T QP Q +AQ
Sbjct: 255 QQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQNQ 314
Query: 145 ----PQQGQTTPVTMQVGE--GQQ---------------VQIVQAQPQGQAQQAQSGTGQ 183
P Q QT P+ Q GQ VQ QPQ Q QQ T Q
Sbjct: 315 PSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQ 374
Query: 184 TMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTE 243
Q++ +Q I L G + P + + ++ Q + Q
Sbjct: 375 AAQMV------APGVQMITEALAQGGMHIRARFPPTTAVSAIPS--SSIPLGRQPMAQVS 426
Query: 244 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQP----SDGQAP 292
Q S + GQQ+ Q Q P Q QP Q ++QP S G AP
Sbjct: 427 -QSSLPMLSSPSPGQQV-QTPQSMPPPPQPSPQPG--QPSSQPNSNVSSGPAP 475
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 87 PPKRQEEVRQSVTPAEPVQYYFT------------LAQQPTAVQVQGQQQGQQTTSSTTT 134
PP+ Q + S A P Q +T + Q P QVQ QQ QT +
Sbjct: 319 PPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQM 378
Query: 135 IQPGQIIIAQ 144
+ PG +I +
Sbjct: 379 VAPGVQMITE 388
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 43.1 bits (100), Expect = 3e-04
Identities = 62/213 (29%), Positives = 80/213 (37%), Gaps = 14/213 (6%)
Query: 85 LKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQ 144
L+ ++Q++ +Q +Q F Q Q Q QQQ QQ Q I Q
Sbjct: 177 LQQQQQQQQQQQFQAQQSAMQQQFQAVVQQ---QQQLQQQQQQQQHLIKLHHQNQQQIQQ 233
Query: 145 PQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQ 204
QQ +Q+ + QQ Q Q Q Q QA QAQ Q MQQ Q +P Q
Sbjct: 234 QQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQPPIQQ--PPMQQ--PQPPPSQALPQQ 289
Query: 205 LNAGQLQYIRLAQPVSGTQ---VVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLY 261
L Q+ + + QP Q V Q Q L +Q TQ V Q Q Q Q
Sbjct: 290 LQ--QMHHTQHHQPPPQPQQPPVAQNQPSQLPPQSQ--TQPLVSQAQALPGQMLYTQPPL 345
Query: 262 QIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQV 294
+ + M Q QP Q QA Q+
Sbjct: 346 KFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQM 378
Score = 38.1 bits (87), Expect = 0.009
Identities = 44/154 (28%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 148 GQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNA 207
GQ P T + + A PQ Q Q Q Q Q Q +QQ Q
Sbjct: 127 GQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQ 186
Query: 208 GQLQYIRLAQPVSGTQVVQGQIQTLATNAQQ--------ITQTEVQQGQQQFSQFTDGQQ 259
Q Q + A VVQ Q Q QQ Q ++QQ QQQ + Q
Sbjct: 187 QQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQ-LQ 245
Query: 260 LYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQ 293
L Q QQ Q Q + Q Q Q PQ
Sbjct: 246 LQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQ 279
Score = 37.4 bits (85), Expect = 0.016
Identities = 55/210 (26%), Positives = 72/210 (34%), Gaps = 23/210 (10%)
Query: 88 PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQ 147
P+ Q +++Q + Q F QQ Q Q QQQ QQ + + +Q QQ
Sbjct: 149 PQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQ---------QQ 199
Query: 148 GQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNA 207
Q V + QQ+Q Q Q Q + Q Q QQ+ Q QL
Sbjct: 200 FQAV-----VQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQL--------QRIAQLQL 246
Query: 208 GQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVT 267
Q Q + Q Q +Q Q QQ Q QQ Q Q Q
Sbjct: 247 QQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQ 306
Query: 268 M-PAGQDLAQPMFIQSANQPSDGQAPQVTG 296
P Q+ + QS QP QA + G
Sbjct: 307 QPPVAQNQPSQLPPQSQTQPLVSQAQALPG 336
Score = 36.2 bits (82), Expect = 0.036
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 87 PPKRQEEVRQSVTPAEPVQYYFT------------LAQQPTAVQVQGQQQGQQTTSSTTT 134
PP+ Q + S A P Q +T + Q P QVQ QQ QT +
Sbjct: 319 PPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQM 378
Query: 135 IQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSG 180
+ PG + ++Q + P+ GQQVQ Q+ P Q G
Sbjct: 379 VAPG-VQVSQ----SSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPG 419
Score = 30.0 bits (66), Expect = 2.6
Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 89 KRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQ--QGQQTTSSTTTIQPGQIIIAQ-- 144
++Q++ +Q++ P+Q QP Q QQ Q T QP Q +AQ
Sbjct: 255 QQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQNQ 314
Query: 145 ----PQQGQTTPVTMQVGE--GQQ---------------VQIVQAQPQGQAQQAQSGTGQ 183
P Q QT P+ Q GQ VQ QPQ Q QQ T Q
Sbjct: 315 PSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQ 374
Query: 184 TMQVM 188
Q++
Sbjct: 375 AAQMV 379
>gi|148277037 AP2 associated kinase 1 [Homo sapiens]
Length = 961
Score = 43.1 bits (100), Expect = 3e-04
Identities = 63/221 (28%), Positives = 77/221 (34%), Gaps = 52/221 (23%)
Query: 81 PRDELKP--PKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPG 138
P+ + P P Q + +Q P P Q T AQ A Q Q Q QQ
Sbjct: 418 PKPQAPPSQPLPQTQAKQPQAPPTPQQTPSTQAQGLPA-QAQATPQHQQ----------- 465
Query: 139 QIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEI 198
Q+ + Q QQ Q P Q QP G Q Q Q Q + T I
Sbjct: 466 QLFLKQQQQQQQPPPAQQ------------QPAGTFYQQQQAQTQQFQAVHP-ATQQPAI 512
Query: 199 QQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ 258
Q PV G Q Q + QQ Q + QQ QQQ + Q
Sbjct: 513 AQFPVVSQGGSQQ------------------QLMQNFYQQQQQQQQQQQQQQLATALHQQ 554
Query: 259 QLYQ-----IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQV 294
QL Q+ TM AGQ QP +A QP+ Q P +
Sbjct: 555 QLMTQQAALQQKPTMAAGQQ-PQPQ-PAAAPQPAPAQEPAI 593
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 41.2 bits (95), Expect = 0.001
Identities = 56/191 (29%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 85 LKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQ 144
LK PK ++ R P V P +Q QQQ +Q Q ++ Q
Sbjct: 73 LKSPKSSDKQRPLQVPVS-VAMMTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQ 131
Query: 145 PQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQ 204
QQ Q Q E +Q++Q Q Q Q QQ Q Q Q QQ QQ Q
Sbjct: 132 QQQLQEFYKKQQ--EQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQ-------QQQQQQ 182
Query: 205 LNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQ 264
Q Q + Q Q Q Q LA AQQ+ QQ Q Q Q L +Q
Sbjct: 183 QQQQQQQQQHPGKQAKEQQQQQQQQQQLA--AQQLV---FQQQLLQMQQLQQQQHLLSLQ 237
Query: 265 Q---VTMPAGQ 272
+ +++P GQ
Sbjct: 238 RQGLISIPPGQ 248
Score = 38.1 bits (87), Expect = 0.009
Identities = 52/178 (29%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 112 QQPTAVQ------VQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQI 165
QQ A+Q +Q Q G ++ S+ +P Q+ ++ +T QV QQ+Q
Sbjct: 53 QQQQALQAARQLLLQQQTSGLKSPKSSDKQRPLQVPVS------VAMMTPQVITPQQMQQ 106
Query: 166 VQAQPQGQAQQAQSGTGQTMQVM--QQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQ 223
+ Q QQ Q+ Q VM QQ + + QQ + L Q Q + Q Q
Sbjct: 107 ILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQQQQQQQQQQQQ 166
Query: 224 VVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQ 281
Q Q Q QQ Q + QQ QQQ Q G+Q + QQ Q AQ + Q
Sbjct: 167 QQQQQQQ------QQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAAQQLVFQ 218
Score = 37.7 bits (86), Expect = 0.012
Identities = 46/185 (24%), Positives = 68/185 (36%), Gaps = 7/185 (3%)
Query: 109 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 168
TL+ Q A G+ G T+S +T++ + QQ Q Q+ QQ +++
Sbjct: 22 TLSSQLDAGSRDGRSSGD-TSSEVSTVE-----LLHLQQQQALQAARQLLLQQQTSGLKS 75
Query: 169 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQ 228
Q+ + Q+IT ++QQI Q Q L Q + Q Q
Sbjct: 76 PKSSDKQRPLQVPVSVAMMTPQVITPQ-QMQQILQQQVLSPQQLQALLQQQQAVMLQQQQ 134
Query: 229 IQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSD 288
+Q Q+ ++ Q QQQ Q QQ Q QQ Q Q Q Q
Sbjct: 135 LQEFYKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPG 194
Query: 289 GQAPQ 293
QA +
Sbjct: 195 KQAKE 199
>gi|4758010 clock [Homo sapiens]
Length = 846
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/179 (30%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 126 QQTTSSTTTIQPGQIIIAQPQQ----GQT----------TPVTMQVGEGQQVQIVQAQPQ 171
QQT ST+T ++ QQ QT T V Q G VQI + PQ
Sbjct: 625 QQTLQSTSTQSQQNVLSGHSQQTSLPSQTQSTLTAPLYNTMVISQPAAGSMVQIPSSMPQ 684
Query: 172 GQAQQAQSGT-GQTMQVM----QQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQ 226
Q A T Q Q+ QQ++T ++ PV A + + + QVV
Sbjct: 685 NSTQSAAVTTFTQDRQIRFSQGQQLVT---KLVTAPVACGA-----VMVPSTMLMGQVVT 736
Query: 227 GQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQP--MFIQSA 283
T AT QQ V Q QQQ Q + QQL +QQ P+ L QP F+Q++
Sbjct: 737 A-YPTFATQQQQSQTLSVTQQQQQ--QSSQEQQLTSVQQ---PSQAQLTQPPQQFLQTS 789
Score = 29.3 bits (64), Expect = 4.4
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 113 QPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQ-PQQGQTTPVTMQVGEGQQVQIVQAQPQ 171
Q +V Q QQQ Q T+ QP Q + Q PQQ T + Q+ + A P
Sbjct: 749 QTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPPQQFLQTSRLLHGNPSTQLILSAAFPL 808
Query: 172 GQAQQAQSGTGQTMQVMQQ 190
Q+ QS Q QQ
Sbjct: 809 QQSTFPQSHHQQHQSQQQQ 827
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 17/164 (10%)
Query: 144 QPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPV 203
+P+QG T P+ + Q+ P T Q Q QQ + QQ
Sbjct: 550 EPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQ----QQQQQQQQQ 605
Query: 204 QLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQI 263
Q Q Q + Q S Q Q Q + +AQQ Q + QQ QQQ Q QQ Q
Sbjct: 606 QQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQ-QQQQQQQQQQQQQQQQQQQQQQQQ 664
Query: 264 QQVTMPAGQDLAQP------------MFIQSANQPSDGQAPQVT 295
Q + PA +QP + Q NQP G QV+
Sbjct: 665 QPSSQPAQSLPSQPLLRSPLPLQQKLLLQQMQNQPIAGMGYQVS 708
Score = 38.1 bits (87), Expect = 0.009
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 112 QQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQ 171
QQ Q Q QQQ QQ++ I AQ QQ Q + ++ Q + QQ Q Q Q Q
Sbjct: 606 QQQQQQQQQQQQQQQQSS-----------ISAQQQQQQQSSISAQQQQQQQQQQQQQQQQ 654
Query: 172 GQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGT--QVVQGQI 229
Q QQ Q + Q Q + + + + P+ L L QP++G QV Q Q
Sbjct: 655 QQQQQQQQQQQPSSQPAQSLPSQ--PLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQR 712
Query: 230 Q 230
Q
Sbjct: 713 Q 713
Score = 35.0 bits (79), Expect = 0.079
Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 25/178 (14%)
Query: 89 KRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQP--- 145
++Q++ + S++ + Q QQ Q Q QQQ QQ +S P Q ++ P
Sbjct: 627 QQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQSLPSQPLLRSPLPL 686
Query: 146 ------QQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQ 199
QQ Q P+ G G QV Q Q Q +G + T +G +
Sbjct: 687 QQKLLLQQMQNQPI---AGMGYQVSQQQRQDQHSVVGQNTGPSPSPNPCSNPNTGSGYMN 743
Query: 200 QIPVQLNAGQLQYIRLAQPVSGTQVVQGQI----QTLATNAQQITQTEVQQGQQQFSQ 253
LN Q + Q +Q QI Q L Q + E Q Q ++
Sbjct: 744 SQQSLLN---------QQLMGKKQTLQRQIMEQKQQLLLQQQMLADAEKIAPQDQINR 792
>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
Length = 740
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/179 (30%), Positives = 69/179 (38%), Gaps = 19/179 (10%)
Query: 99 TPAEPVQYYFTLAQQPTAVQVQG--QQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQ 156
T A PV Q T Q+Q QQQ +Q Q ++ Q QQ Q Q
Sbjct: 109 TFAVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQ 168
Query: 157 VGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLA 216
E +Q++Q Q Q Q QQ Q Q Q QQ QQ Q Q Q
Sbjct: 169 --EQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQ-------QQQQQQQQQQQQQQQHPG 219
Query: 217 QPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQ---VTMPAGQ 272
+ Q Q Q Q LA AQQ+ QQ Q Q Q L +Q+ +++P GQ
Sbjct: 220 KQAKEQQQQQQQQQQLA--AQQLV---FQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQ 273
Score = 38.1 bits (87), Expect = 0.009
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 85 LKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQ-----QGQQTTSSTTTIQPGQ 139
+ P + Q+ ++Q V + +Q L QQ AV +Q QQ + QQ +Q Q
Sbjct: 124 ITPQQMQQILQQQVLSPQQLQ---ALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQ 180
Query: 140 IIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQ 199
Q QQ Q Q + QQ Q Q Q Q Q QQ G Q QQ Q
Sbjct: 181 Q--QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAAQ 238
Query: 200 QIPVQLNAGQLQYIRLAQPVSGTQ 223
Q+ Q Q+Q ++ Q + Q
Sbjct: 239 QLVFQQQLLQMQQLQQQQHLLSLQ 262
Score = 35.0 bits (79), Expect = 0.079
Identities = 42/131 (32%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 153 VTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVM--QQIITNTGEIQQIPVQLNAGQL 210
+T QV QQ+Q + Q QQ Q+ Q VM QQ + + QQ + L Q
Sbjct: 119 MTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQ 178
Query: 211 QYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPA 270
Q + Q Q Q Q Q QQ Q + QQ QQQ Q G+Q + QQ
Sbjct: 179 QQQQQQQQQQQQQQQQQQQQ------QQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQ 232
Query: 271 GQDLAQPMFIQ 281
Q AQ + Q
Sbjct: 233 QQLAAQQLVFQ 243
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 184 TMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTE 243
T Q MQQI+ QQ+ L+ QLQ L Q + Q Q+Q Q+ +
Sbjct: 125 TPQQMQQILQ-----QQV---LSPQQLQ--ALLQQQQAVMLQQQQLQEFYKKQQEQLHLQ 174
Query: 244 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQ 293
+ Q QQQ Q QQ Q QQ Q Q Q Q QA +
Sbjct: 175 LLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKE 224
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 39.3 bits (90), Expect = 0.004
Identities = 71/292 (24%), Positives = 102/292 (34%), Gaps = 17/292 (5%)
Query: 8 GGTSSSDAQQSLQSFWPRVMEEIRNLTVK-DFRVQELPLARIKKIMKLDEDVKRNDIAMA 66
G S + + + W + +RN+T D + P + L K ++
Sbjct: 316 GQNLQSSERSEMIATWSPAVRTLRNITNNADIQQMNRPSNVAHILQTLSAPTK--NLEQQ 373
Query: 67 ITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQ 126
+ Q + V ++K ++Q + Q + L QP + QQQ Q
Sbjct: 374 VNHSQQGHTNANAVLFSQVKVTPETHMLQQQQQAQQQQQQHPVLHLQPQQIMQLQQQQQQ 433
Query: 127 QTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQ--PQGQAQQAQSGTGQT 184
Q + QP +Q QQ Q Q + QQ+Q Q Q P Q + Q Q
Sbjct: 434 QISQQPYPQQPPHPF-SQQQQQQQQAHPHQFSQ-QQLQFPQQQLHPPQQLHRPQ----QQ 487
Query: 185 MQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEV 244
+Q QQ +QQ QL QLQ +LAQ ++Q Q Q Q +
Sbjct: 488 LQPFQQ----QHALQQQFHQLQQHQLQQQQLAQLQQQHSLLQQQQQQQIQQQQLQRMHQQ 543
Query: 245 QQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTG 296
QQ QQ SQ L Q Q P Q P Q Q+ G
Sbjct: 544 QQQQQMQSQ--TAPHLSQTSQALQHQVPPQQPPQQQQQQQPPPSPQQHQLFG 593
>gi|38570099 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 113 QPTAVQVQGQQQGQQTTSSTTTIQPGQII-IAQPQQGQTTPVTMQVGEGQQVQIVQAQPQ 171
Q TA QQG + +T G ++ +A P P T Q + Q Q Q Q Q
Sbjct: 46 QQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSVQPQTQQEQQIQVQQPQQVQVQ 105
Query: 172 GQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLN-------AGQLQYIRLAQP-VSGTQ 223
Q QQ+ + + T + Q+ VQ+ A +Q L P S Q
Sbjct: 106 VQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQGQAPQSAAPSIQTPSLQSPSPSQLQ 165
Query: 224 VVQGQIQTLATNAQQITQTEVQQ----GQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMF 279
Q Q+Q + AQQI E+ + QQ +Q GQ L QQ+ + L+ P
Sbjct: 166 AAQIQVQHVQA-AQQIQAAEIPEEHIPHQQIQAQLVAGQSLAGGQQIQIQTVGALSPPPS 224
Query: 280 IQSANQPSDGQ 290
Q + P +G+
Sbjct: 225 QQGS--PREGE 233
Score = 34.3 bits (77), Expect = 0.14
Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 55/234 (23%)
Query: 103 PVQYYFTLAQQPTAVQV---QGQQQGQQTTSSTTTIQPGQIIIAQPQ-QGQTTPVTMQVG 158
P+ + ++ QP A + QGQQQ S +++P + + T +T G
Sbjct: 253 PITVSYAISGQPVATVLAIPQGQQQ------SYVSLRPDLLTVDSAHLYSATGTITSPTG 306
Query: 159 EGQQVQIVQAQPQGQAQQ-----------------------------------AQSGTGQ 183
E + + AQP+G QQ GT
Sbjct: 307 ETWTIPVYSAQPRGDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVKLEDDKEKMVGTTS 366
Query: 184 TMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTL-----ATNAQQ 238
++ + + T P Q G + Q V+GT Q QT+ QQ
Sbjct: 367 VVKNSHEEVVQTLANSLFPAQFMNGNIHIPVAVQAVAGT--YQNTAQTVHIWDPQQQPQQ 424
Query: 239 IT---QTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDG 289
T QT Q QQQ Q T Q Q+ +V + + + + ++ +P +G
Sbjct: 425 QTPQEQTPPPQQQQQQLQVTCSAQTVQVAEVEPQSQPQPSPELLLPNSLKPEEG 478
>gi|38570097 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 113 QPTAVQVQGQQQGQQTTSSTTTIQPGQII-IAQPQQGQTTPVTMQVGEGQQVQIVQAQPQ 171
Q TA QQG + +T G ++ +A P P T Q + Q Q Q Q Q
Sbjct: 46 QQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSVQPQTQQEQQIQVQQPQQVQVQ 105
Query: 172 GQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLN-------AGQLQYIRLAQP-VSGTQ 223
Q QQ+ + + T + Q+ VQ+ A +Q L P S Q
Sbjct: 106 VQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQGQAPQSAAPSIQTPSLQSPSPSQLQ 165
Query: 224 VVQGQIQTLATNAQQITQTEVQQ----GQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMF 279
Q Q+Q + AQQI E+ + QQ +Q GQ L QQ+ + L+ P
Sbjct: 166 AAQIQVQHVQA-AQQIQAAEIPEEHIPHQQIQAQLVAGQSLAGGQQIQIQTVGALSPPPS 224
Query: 280 IQSANQPSDGQ 290
Q + P +G+
Sbjct: 225 QQGS--PREGE 233
Score = 34.3 bits (77), Expect = 0.14
Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 55/234 (23%)
Query: 103 PVQYYFTLAQQPTAVQV---QGQQQGQQTTSSTTTIQPGQIIIAQPQ-QGQTTPVTMQVG 158
P+ + ++ QP A + QGQQQ S +++P + + T +T G
Sbjct: 253 PITVSYAISGQPVATVLAIPQGQQQ------SYVSLRPDLLTVDSAHLYSATGTITSPTG 306
Query: 159 EGQQVQIVQAQPQGQAQQ-----------------------------------AQSGTGQ 183
E + + AQP+G QQ GT
Sbjct: 307 ETWTIPVYSAQPRGDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVKLEDDKEKMVGTTS 366
Query: 184 TMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTL-----ATNAQQ 238
++ + + T P Q G + Q V+GT Q QT+ QQ
Sbjct: 367 VVKNSHEEVVQTLANSLFPAQFMNGNIHIPVAVQAVAGT--YQNTAQTVHIWDPQQQPQQ 424
Query: 239 IT---QTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDG 289
T QT Q QQQ Q T Q Q+ +V + + + + ++ +P +G
Sbjct: 425 QTPQEQTPPPQQQQQQLQVTCSAQTVQVAEVEPQSQPQPSPELLLPNSLKPEEG 478
>gi|22538413 forkhead box P2 isoform III [Homo sapiens]
Length = 623
Score = 38.5 bits (88), Expect = 0.007
Identities = 49/162 (30%), Positives = 63/162 (38%), Gaps = 17/162 (10%)
Query: 114 PTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQ 173
P +Q QQQ +Q Q ++ Q QQ Q Q E +Q++Q Q Q Q
Sbjct: 9 PQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQ--EQLHLQLLQQQQQQQ 66
Query: 174 AQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLA 233
QQ Q Q Q QQ QQ Q Q Q + Q Q Q Q LA
Sbjct: 67 QQQQQQQQQQQQQQQQQQ-------QQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLA 119
Query: 234 TNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQ---VTMPAGQ 272
AQQ+ QQ Q Q Q L +Q+ +++P GQ
Sbjct: 120 --AQQLV---FQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQ 156
Score = 38.1 bits (87), Expect = 0.009
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 85 LKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQ-----QGQQTTSSTTTIQPGQ 139
+ P + Q+ ++Q V + +Q L QQ AV +Q QQ + QQ +Q Q
Sbjct: 7 ITPQQMQQILQQQVLSPQQLQ---ALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQ 63
Query: 140 IIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQ 199
Q QQ Q Q + QQ Q Q Q Q Q QQ G Q QQ Q
Sbjct: 64 Q--QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAAQ 121
Query: 200 QIPVQLNAGQLQYIRLAQPVSGTQ 223
Q+ Q Q+Q ++ Q + Q
Sbjct: 122 QLVFQQQLLQMQQLQQQQHLLSLQ 145
Score = 35.0 bits (79), Expect = 0.079
Identities = 42/131 (32%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 153 VTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVM--QQIITNTGEIQQIPVQLNAGQL 210
+T QV QQ+Q + Q QQ Q+ Q VM QQ + + QQ + L Q
Sbjct: 2 MTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQ 61
Query: 211 QYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPA 270
Q + Q Q Q Q Q QQ Q + QQ QQQ Q G+Q + QQ
Sbjct: 62 QQQQQQQQQQQQQQQQQQQQ------QQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQ 115
Query: 271 GQDLAQPMFIQ 281
Q AQ + Q
Sbjct: 116 QQLAAQQLVFQ 126
Score = 35.0 bits (79), Expect = 0.079
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 142 IAQPQQGQTTPVTMQVGEGQQVQIVQAQPQG---QAQQAQSG-TGQTMQVMQQIITNTGE 197
+ PQQ Q + QV QQ+Q + Q Q Q QQ Q Q Q+ Q++ +
Sbjct: 6 VITPQQMQQI-LQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQQ 64
Query: 198 IQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFS--QFT 255
QQ Q Q Q + Q Q Q Q Q Q Q + QQ QQQ + Q
Sbjct: 65 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAAQQLV 124
Query: 256 DGQQLYQIQQV 266
QQL Q+QQ+
Sbjct: 125 FQQQLLQMQQL 135
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 184 TMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTE 243
T Q MQQI+ QQ+ L+ QLQ L Q + Q Q+Q Q+ +
Sbjct: 8 TPQQMQQILQ-----QQV---LSPQQLQ--ALLQQQQAVMLQQQQLQEFYKKQQEQLHLQ 57
Query: 244 VQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQ 293
+ Q QQQ Q QQ Q QQ Q Q Q Q QA +
Sbjct: 58 LLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKE 107
>gi|4507379 TATA box binding protein [Homo sapiens]
Length = 339
Score = 38.1 bits (87), Expect = 0.009
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 217 QPVSGTQ---VVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQD 273
QP+ T +++ Q + QQ Q + QQ QQQ Q QQ Q QQ
Sbjct: 41 QPIQNTNSLSILEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAA 100
Query: 274 LAQPMFIQSANQPSDGQAPQV 294
Q Q A Q + GQAPQ+
Sbjct: 101 AVQQSTSQQATQGTSGQAPQL 121
Score = 28.9 bits (63), Expect = 5.7
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 98 VTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQV 157
+TP +P+Q +L+ + Q QQQ QQ Q Q QQ Q Q
Sbjct: 38 LTP-QPIQNTNSLSILEEQQRQQQQQQQQQQQQQQQQQQQ------QQQQQQQQQQQQQQ 90
Query: 158 GEGQQVQIVQAQPQGQAQQAQSGT-GQTMQVMQQIITNTGEI 198
+ QQ A Q +QQA GT GQ Q+ T +
Sbjct: 91 QQQQQAVAAAAVQQSTSQQATQGTSGQAPQLFHSQTLTTAPL 132
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 38.1 bits (87), Expect = 0.009
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 137 PGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA-----QPQGQAQQAQSGTGQTMQVMQQI 191
P Q + Q QG +P +G + V + PQ Q + Q M Q
Sbjct: 108 PPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQ- 166
Query: 192 ITNTGEIQQIPVQLN---AGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQ 248
N G PVQL+ A L Y LA+ + +Q +Q T Q + QQ Q
Sbjct: 167 -PNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQ 225
Query: 249 QQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTG 296
QQ Q QQ QQ P Q QP + + N+PS G P+++G
Sbjct: 226 QQQQQQQQQQQQQPQQQPPQPQTQQQQQPALV-NYNRPS-GPGPELSG 271
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 38.1 bits (87), Expect = 0.009
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 137 PGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA-----QPQGQAQQAQSGTGQTMQVMQQI 191
P Q + Q QG +P +G + V + PQ Q + Q M Q
Sbjct: 108 PPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQ- 166
Query: 192 ITNTGEIQQIPVQLN---AGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQ 248
N G PVQL+ A L Y LA+ + +Q +Q T Q + QQ Q
Sbjct: 167 -PNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQ 225
Query: 249 QQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTG 296
QQ Q QQ QQ P Q QP + + N+PS G P+++G
Sbjct: 226 QQQQQQQQQQQQQPQQQPPQPQTQQQQQPALV-NYNRPS-GPGPELSG 271
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,336,327
Number of Sequences: 37866
Number of extensions: 447130
Number of successful extensions: 1846
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 350
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.