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Search of human proteins with 21450717
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21450717 sushi domain containing 3 [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21450717 sushi domain containing 3 [Homo sapiens] 518 e-147
gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4 ... 44 1e-04
gi|166235138 seizure related 6 homolog (mouse)-like 2 isoform 3 ... 44 1e-04
gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2 ... 44 1e-04
gi|6912612 seizure related 6 homolog (mouse)-like 2 isoform 1 [H... 44 1e-04
gi|187960042 selectin E precursor [Homo sapiens] 42 4e-04
gi|27502421 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502419 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502417 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502415 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502413 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502411 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502409 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502407 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502405 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502402 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|24432108 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502427 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502425 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|27502423 CD46 antigen, complement regulatory protein isoform ... 40 0.002
gi|86793109 complement receptor 1 isoform S precursor [Homo sapi... 40 0.003
gi|86793036 complement receptor 1 isoform F precursor [Homo sapi... 40 0.003
gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens] 39 0.004
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 38 0.010
gi|50659100 regeneration associated muscle protease isoform b [H... 36 0.029
gi|50659098 regeneration associated muscle protease isoform a [H... 36 0.029
gi|148922949 complement component (3b/4b) receptor 1-like [Homo ... 36 0.029
gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens] 36 0.029
gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens] 36 0.029
gi|148886654 polydom [Homo sapiens] 36 0.037
>gi|21450717 sushi domain containing 3 [Homo sapiens]
Length = 255
Score = 518 bits (1333), Expect = e-147
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MRWAAATLRGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFR 60
MRWAAATLRGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFR
Sbjct: 1 MRWAAATLRGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFR 60
Query: 61 CPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVPPHETFGFKVAVIASIVSCAIILLMS 120
CPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVPPHETFGFKVAVIASIVSCAIILLMS
Sbjct: 61 CPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVPPHETFGFKVAVIASIVSCAIILLMS 120
Query: 121 MAFLTCCLLKCVKKSKRRRSNRSAQLWSQLKDEDLETVQAAYLGLKHFNKPVSGPSQAHD 180
MAFLTCCLLKCVKKSKRRRSNRSAQLWSQLKDEDLETVQAAYLGLKHFNKPVSGPSQAHD
Sbjct: 121 MAFLTCCLLKCVKKSKRRRSNRSAQLWSQLKDEDLETVQAAYLGLKHFNKPVSGPSQAHD 180
Query: 181 NHSFTTDHGESTSKLASVTRSVDKDPGIPRALSLSGSSSSPQAQVMVHMANPRQPLPASG 240
NHSFTTDHGESTSKLASVTRSVDKDPGIPRALSLSGSSSSPQAQVMVHMANPRQPLPASG
Sbjct: 181 NHSFTTDHGESTSKLASVTRSVDKDPGIPRALSLSGSSSSPQAQVMVHMANPRQPLPASG 240
Query: 241 LATGMPQQPAAYALG 255
LATGMPQQPAAYALG
Sbjct: 241 LATGMPQQPAAYALG 255
>gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4
[Homo sapiens]
Length = 809
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 28 RTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSG 87
R TC +L PP+ ++ GTVL ++C ++++GS +LTC W S WS+
Sbjct: 526 RNDTCPELP-PPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDLS---WSAA 581
Query: 88 SPVCKLV 94
P C+ +
Sbjct: 582 PPACQKI 588
Score = 35.8 bits (81), Expect = 0.037
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 22 TPAPGNRTGTCAKLRLP------PQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTC 75
TP +R CA P P+ +Q L + G L F C +++G +TC
Sbjct: 640 TPKWSDRVPKCALKYEPCLNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITC 699
Query: 76 TWKGSIAEWSSGSPVCKL 93
G ++W+S P+CK+
Sbjct: 700 V-PGHPSQWTSQPPLCKV 716
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTCTWKGS-IAEWSSGSPVCKL 93
G VG+ + +RC + + G+ +LTC + + +WS P C L
Sbjct: 608 GFPVGSHVQYRCLPGYSLEGAAMLTCYSRDTGTPKWSDRVPKCAL 652
>gi|166235138 seizure related 6 homolog (mouse)-like 2 isoform 3
[Homo sapiens]
Length = 840
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 28 RTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSG 87
R TC +L PP+ ++ GTVL ++C ++++GS +LTC W S WS+
Sbjct: 570 RNDTCPELP-PPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDLS---WSAA 625
Query: 88 SPVCKLV 94
P C+ +
Sbjct: 626 PPACQKI 632
Score = 37.0 bits (84), Expect = 0.017
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 22 TPAPGNRTGTCAKLRLP------PQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTC 75
TP +R CA P P+ +Q L + G L F C +++G +TC
Sbjct: 684 TPKWSDRVPKCALKYEPCLNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITC 743
Query: 76 TWKGSIAEWSSGSPVCKLV----PPHETFGFKVAVIASIVSCAIILLMSMAFL 124
G ++W+S P+CK+ P + G +A+ + +I+L S ++
Sbjct: 744 V-PGHPSQWTSQPPLCKVTQTTDPSRQLEGGNLALAILLPLGLVIVLGSGVYI 795
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTCTWKGS-IAEWSSGSPVCKL 93
G VG+ + +RC + + G+ +LTC + + +WS P C L
Sbjct: 652 GFPVGSHVQYRCLPGYSLEGAAMLTCYSRDTGTPKWSDRVPKCAL 696
>gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2
[Homo sapiens]
Length = 910
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 28 RTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSG 87
R TC +L PP+ ++ GTVL ++C ++++GS +LTC W S WS+
Sbjct: 640 RNDTCPELP-PPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDLS---WSAA 695
Query: 88 SPVCKLV 94
P C+ +
Sbjct: 696 PPACQKI 702
Score = 37.0 bits (84), Expect = 0.017
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 22 TPAPGNRTGTCAKLRLP------PQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTC 75
TP +R CA P P+ +Q L + G L F C +++G +TC
Sbjct: 754 TPKWSDRVPKCALKYEPCLNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITC 813
Query: 76 TWKGSIAEWSSGSPVCKLV----PPHETFGFKVAVIASIVSCAIILLMSMAFL 124
G ++W+S P+CK+ P + G +A+ + +I+L S ++
Sbjct: 814 V-PGHPSQWTSQPPLCKVTQTTDPSRQLEGGNLALAILLPLGLVIVLGSGVYI 865
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTCTWKGS-IAEWSSGSPVCKL 93
G VG+ + +RC + + G+ +LTC + + +WS P C L
Sbjct: 722 GFPVGSHVQYRCLPGYSLEGAAMLTCYSRDTGTPKWSDRVPKCAL 766
>gi|6912612 seizure related 6 homolog (mouse)-like 2 isoform 1 [Homo
sapiens]
Length = 853
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 28 RTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSG 87
R TC +L PP+ ++ GTVL ++C ++++GS +LTC W S WS+
Sbjct: 570 RNDTCPELP-PPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDLS---WSAA 625
Query: 88 SPVCKLV 94
P C+ +
Sbjct: 626 PPACQKI 632
Score = 35.8 bits (81), Expect = 0.037
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 22 TPAPGNRTGTCAKLRLP------PQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTC 75
TP +R CA P P+ +Q L + G L F C +++G +TC
Sbjct: 684 TPKWSDRVPKCALKYEPCLNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITC 743
Query: 76 TWKGSIAEWSSGSPVCKL 93
G ++W+S P+CK+
Sbjct: 744 V-PGHPSQWTSQPPLCKV 760
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTCTWKGS-IAEWSSGSPVCKL 93
G VG+ + +RC + + G+ +LTC + + +WS P C L
Sbjct: 652 GFPVGSHVQYRCLPGYSLEGAAMLTCYSRDTGTPKWSDRVPKCAL 696
>gi|187960042 selectin E precursor [Homo sapiens]
Length = 610
Score = 42.4 bits (98), Expect = 4e-04
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 21 TTPAPGNRTGTCAKLRLPPQATFQVLRGNGASV-GTVLMFRCPSNHQMVGSGLLTCTWKG 79
T P + C+ L +P + +G V GTV F CP + GS TC G
Sbjct: 482 TEEVPSCQVVKCSSLAVPGKINMSC---SGEPVFGTVCKFACPEGWTLNGSAARTC---G 535
Query: 80 SIAEWSSGSPVCKLVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVKKSKR 137
+ WS P C+ P E+ + ++A + S A + L+++A L KC++K+K+
Sbjct: 536 ATGHWSGLLPTCE--APTES---NIPLVAGL-SAAGLSLLTLAPFLLWLRKCLRKAKK 587
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 21 TTPAPGNRTGTCAKLRLPPQATFQVLRGNGASV-GTVLMFRCPSNHQMVGSGLLTCTWKG 79
+ P P C + P + + G+ T F C +++G+ L CT G
Sbjct: 231 SAPIPACNVVECDAVTNPANGFVECFQNPGSFPWNTTCTFDCEEGFELMGAQSLQCTSSG 290
Query: 80 SIAEWSSGSPVCKLV 94
+ W + P CK V
Sbjct: 291 N---WDNEKPTCKAV 302
>gi|27502421 CD46 antigen, complement regulatory protein isoform 13
precursor [Homo sapiens]
Length = 373
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502419 CD46 antigen, complement regulatory protein isoform 11
precursor [Homo sapiens]
Length = 348
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502417 CD46 antigen, complement regulatory protein isoform 10
precursor [Homo sapiens]
Length = 370
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502415 CD46 antigen, complement regulatory protein isoform 9
precursor [Homo sapiens]
Length = 363
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502413 CD46 antigen, complement regulatory protein isoform 7
precursor [Homo sapiens]
Length = 378
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502411 CD46 antigen, complement regulatory protein isoform 6
precursor [Homo sapiens]
Length = 369
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502409 CD46 antigen, complement regulatory protein isoform 5
precursor [Homo sapiens]
Length = 362
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502407 CD46 antigen, complement regulatory protein isoform 3
precursor [Homo sapiens]
Length = 377
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502405 CD46 antigen, complement regulatory protein isoform 14
precursor [Homo sapiens]
Length = 349
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502402 CD46 antigen, complement regulatory protein isoform 1
precursor [Homo sapiens]
Length = 392
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|24432108 CD46 antigen, complement regulatory protein isoform 4
precursor [Homo sapiens]
Length = 384
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502427 CD46 antigen, complement regulatory protein isoform 12
precursor [Homo sapiens]
Length = 355
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502425 CD46 antigen, complement regulatory protein isoform 8
precursor [Homo sapiens]
Length = 385
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|27502423 CD46 antigen, complement regulatory protein isoform 2
precursor [Homo sapiens]
Length = 399
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGA-SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSP 89
TC +R P Q + NG G + F C + ++G +L C KGS+A WS P
Sbjct: 98 TCPYIRDPLNG--QAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPP 155
Query: 90 VCKLV 94
+C+ V
Sbjct: 156 ICEKV 160
>gi|86793109 complement receptor 1 isoform S precursor [Homo
sapiens]
Length = 2489
Score = 39.7 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
VG+ + + C + H+++G C G+ A WS+ P+C+ +P
Sbjct: 573 VGSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIP 615
Score = 39.7 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
VG+ + + C + H+++G C G+ A WS+ P+C+ +P
Sbjct: 1023 VGSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIP 1065
Score = 39.7 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
VG+ + + C + H+++G C G+ A WS+ P+C+ +P
Sbjct: 1473 VGSRINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIP 1515
Score = 37.0 bits (84), Expect = 0.017
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
G G+ + + C ++++GS TC G W + +P+C +P
Sbjct: 120 GIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICDRIP 165
Score = 32.7 bits (73), Expect = 0.32
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 54 GTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
G+ + + C +++GS TC G+ W +P+C+++
Sbjct: 1927 GSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEII 1967
Score = 32.0 bits (71), Expect = 0.54
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 6 ATLRGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASV---GTVLMFRCP 62
+++R + P+G ++PAP A PP+ G S+ G + + C
Sbjct: 2269 SSIRCTSDPQGNGVWSSPAPRCELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICD 2328
Query: 63 SNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+ +VG G + CT +G WS CK V
Sbjct: 2329 PGYLLVGKGFIFCTDQGI---WSQLDHYCKEV 2357
Score = 29.6 bits (65), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+G + F C Q+ GS C G + W+S PVC+ +
Sbjct: 378 LGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQI 419
Score = 29.6 bits (65), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+G + F C Q+ GS C G + W+S PVC+ +
Sbjct: 828 LGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQI 869
Score = 29.6 bits (65), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+G + F C Q+ GS C G + W+S PVC+ +
Sbjct: 1278 LGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQI 1319
Score = 28.5 bits (62), Expect = 5.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 44 QVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+VL +G + F C ++ G C G A W+S PVC+ +
Sbjct: 2172 RVLLPLNLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQI 2222
>gi|86793036 complement receptor 1 isoform F precursor [Homo
sapiens]
Length = 2039
Score = 39.7 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
VG+ + + C + H+++G C G+ A WS+ P+C+ +P
Sbjct: 573 VGSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIP 615
Score = 39.7 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
VG+ + + C + H+++G C G+ A WS+ P+C+ +P
Sbjct: 1023 VGSRINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIP 1065
Score = 37.0 bits (84), Expect = 0.017
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVP 95
G G+ + + C ++++GS TC G W + +P+C +P
Sbjct: 120 GIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICDRIP 165
Score = 32.7 bits (73), Expect = 0.32
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 54 GTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
G+ + + C +++GS TC G+ W +P+C+++
Sbjct: 1477 GSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEII 1517
Score = 32.0 bits (71), Expect = 0.54
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 6 ATLRGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASV---GTVLMFRCP 62
+++R + P+G ++PAP A PP+ G S+ G + + C
Sbjct: 1819 SSIRCTSDPQGNGVWSSPAPRCELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICD 1878
Query: 63 SNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+ +VG G + CT +G WS CK V
Sbjct: 1879 PGYLLVGKGFIFCTDQGI---WSQLDHYCKEV 1907
Score = 29.6 bits (65), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+G + F C Q+ GS C G + W+S PVC+ +
Sbjct: 378 LGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQI 419
Score = 29.6 bits (65), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+G + F C Q+ GS C G + W+S PVC+ +
Sbjct: 828 LGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQI 869
Score = 28.5 bits (62), Expect = 5.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 44 QVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+VL +G + F C ++ G C G A W+S PVC+ +
Sbjct: 1722 RVLLPLNLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQI 1772
>gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens]
Length = 3487
Score = 38.9 bits (89), Expect = 0.004
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 9 RGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMV 68
+G A RG V P C+ + P+ + G+ SVG ++ F C S + +
Sbjct: 1712 KGLAPARGFHFVYQAVPRTSATQCSSV---PEPRYGKRLGSDFSVGAIVRFECNSGYALQ 1768
Query: 69 GSGLLTC-TWKGSIAEWSSGSPVC 91
GS + C G++A+W+ +P C
Sbjct: 1769 GSPEIECLPVPGALAQWNVSAPTC 1792
Score = 38.1 bits (87), Expect = 0.008
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 26 GNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWS 85
G G C +P + G+ GTV+ F C + H + GS TC GS WS
Sbjct: 2829 GTSVGVCGDPGIPAHG---IRLGDSFDPGTVMRFSCEAGHVLRGSSERTCQANGS---WS 2882
Query: 86 SGSPVCKLV 94
P C ++
Sbjct: 2883 GSQPECGVI 2891
Score = 34.7 bits (78), Expect = 0.083
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 45 VLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKL 93
++RG G +VG + F C +Q+ G +LTC G+ W P C++
Sbjct: 2133 IVRGAGYNVGQSVTFECLPGYQLTGHPVLTCQ-HGTNRNWDHPLPKCEV 2180
Score = 31.2 bits (69), Expect = 0.92
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 52 SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKL-VPPHETFGFKVAVIAS 109
++G ++ +RC +VG+ +LTC G+ ++ P+C++ P +E VI S
Sbjct: 2313 NIGDIVRYRCLPGFTLVGNEILTCK-LGTYLQFEGPPPICEVHCPTNELLTDSTGVILS 2370
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 48 GNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSI-AEWSSGSPVCK 92
G+ +G+ + F C + + GS +TC + A WS PVC+
Sbjct: 356 GSDFRLGSSVQFTCNEGYDLQGSKRITCMKVSDMFAAWSDHRPVCR 401
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 19/80 (23%)
Query: 11 KARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTV------LMFRCPSN 64
+ + G+ + P R +C +L +PP NG +GT+ +F C S
Sbjct: 2637 RCQANGKWSLGDSTPTCRIISCGELPIPP---------NGHRIGTLSVYGATAIFSCNSG 2687
Query: 65 HQMVGSGLLTC----TWKGS 80
+ +VGS + C W GS
Sbjct: 2688 YTLVGSRVRECMANGLWSGS 2707
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 38 PPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
P + + +G VG L F C +++ G+ +TC G WSS P C
Sbjct: 1042 PEVPAYSIRKGLQFGVGDTLTFSCFPGYRLEGTARITCL-GGRRRLWSSPLPRC 1094
Score = 29.3 bits (64), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTC----TWKGS 80
G VG+ ++FRC + + GS TC TW G+
Sbjct: 3147 GYQVGSTVLFRCQKGYLLQGSTTRTCLPNLTWSGT 3181
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 37.7 bits (86), Expect = 0.010
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 18 AGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTW 77
+G GN G C P + G+ ++L F C HQ+ GS TC
Sbjct: 2907 SGALPHCTGNNPGFCGDPGTPAHGS---RLGDDFKTKSLLRFSCEMGHQLRGSPERTCLL 2963
Query: 78 KGSIAEWSSGSPVCKLV----PPHETFGFKVAVIASIVSCAII 116
GS WS PVC+ V P T G V+ + S ++I
Sbjct: 2964 NGS---WSGLQPVCEAVSCGNPGTPTNGMIVSSDGILFSSSVI 3003
Score = 32.0 bits (71), Expect = 0.54
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 54 GTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
G L F CP+ ++VG ++TC +WS P C
Sbjct: 547 GDTLTFECPAAFELVGERVITCQQNN---QWSGNKPSC 581
Score = 31.2 bits (69), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTC-TWKGSIAEWSSGSPVCK 92
VG + F C N+ + GS +TC ++A WS P+C+
Sbjct: 368 VGANVQFSCEDNYVLQGSKSITCQRVTETLAAWSDHRPICR 408
Score = 30.0 bits (66), Expect = 2.0
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 31 TCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPV 90
TC +P T G+ G + F+C +Q+ G +TC + W P
Sbjct: 1391 TCNDPGMPQNGTRY---GDSREAGDTVTFQCDPGYQLQGQAKITCVQLNNRFFWQPDPPT 1447
Query: 91 C 91
C
Sbjct: 1448 C 1448
Score = 30.0 bits (66), Expect = 2.0
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 12 ARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSG 71
A RG V P C+ + P+ + G+ S G+++ F C + + GS
Sbjct: 1722 ASARGFHFVYQAVPRTSDTQCSSV---PEPRYGRRIGSEFSAGSIVRFECNPGYLLQGST 1778
Query: 72 LLTC-TWKGSIAEWSSGSPVCKLVPPHETFGFKVAVIAS 109
L C + ++A+W+ P C +VP F + I S
Sbjct: 1779 ALHCQSVPNALAQWNDTIPSC-VVPCSGNFTQRRGTILS 1816
Score = 29.6 bits (65), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 45 VLRGNGASVGTVLMFRCPSNHQMVGSGLLTC-TWKGSIAEWSSGSPVCK 92
VL G ++G + + C + + G +LTC G+ A W +P C+
Sbjct: 155 VLHGTRFNIGDKIRYSCLPGYILEGHAILTCIVSPGNGASWDFPAPFCR 203
Score = 29.6 bits (65), Expect = 2.7
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 46 LRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
+R G TV+++ C + M GS LTC G W P C
Sbjct: 1230 IRDEGHFTDTVVLYSCNPGYAMHGSNTLTCL-SGDRRVWDKPLPSC 1274
Score = 29.6 bits (65), Expect = 2.7
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 48 GNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
G+ V VL F+C + + G ++C G++ W+ SP+C
Sbjct: 1929 GDRYMVNDVLSFQCEPGYTLQGRSHISC-MPGTVRRWNYPSPLC 1971
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 45 VLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKG-SIAEWSSGSPVCKLV 94
+L +VG+ + + C ++MVG TC + +W S +P+C+ V
Sbjct: 2444 ILNRTAGAVGSKVHYFCKPGYRMVGHSNATCRRNPLGMYQWDSLTPLCQAV 2494
Score = 28.9 bits (63), Expect = 4.6
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 11 KARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLM------FRCPSN 64
+ + G + P R +C L PP NG +GT+ + F C +
Sbjct: 2602 RCQANGTWNIGDERPSCRVISCGSLSFPP---------NGNKIGTLTVYGATAIFTCNTG 2652
Query: 65 HQMVGSGLLTCTWKGSIAEWSSGSPVC 91
+ +VGS + C G WS C
Sbjct: 2653 YTLVGSHVRECLANGL---WSGSETRC 2676
Score = 28.1 bits (61), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 50 GASVGTVLMFRCPSNHQMVGSGLLTC----TWKG 79
G VG+ + FRC + + GS TC TW G
Sbjct: 3233 GYEVGSTVFFRCRKGYHIQGSTTRTCLANLTWSG 3266
>gi|50659100 regeneration associated muscle protease isoform b [Homo
sapiens]
Length = 720
Score = 36.2 bits (82), Expect = 0.029
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 45 VLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
++ G A +GTV+ F C +++ + G+ TC G EWS P+C
Sbjct: 299 LINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQNG---EWSGKQPIC 342
>gi|50659098 regeneration associated muscle protease isoform a [Homo
sapiens]
Length = 737
Score = 36.2 bits (82), Expect = 0.029
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 45 VLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
++ G A +GTV+ F C +++ + G+ TC G EWS P+C
Sbjct: 316 LINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQNG---EWSGKQPIC 359
>gi|148922949 complement component (3b/4b) receptor 1-like [Homo
sapiens]
Length = 569
Score = 36.2 bits (82), Expect = 0.029
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
VG+ + + C + H+++G C G+ A WS P+C+ +
Sbjct: 432 VGSRINYSCTTGHRLIGHSSAECILSGNTAHWSMKPPICQQI 473
Score = 34.7 bits (78), Expect = 0.083
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 57 LMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
+ + CP ++++GS TC G+ W + +PVC
Sbjct: 119 IKYSCPKGYRLIGSSSATCIISGNTVIWDNKTPVC 153
Score = 29.3 bits (64), Expect = 3.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 31 TCAKLRLPPQATFQVLRG----NGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSS 86
+C+++ PP R + S G + + C + + GS L CT +G +WS
Sbjct: 284 SCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGSTYLHCTPQG---DWSP 340
Query: 87 GSPVCKL 93
+P C++
Sbjct: 341 AAPRCEV 347
Score = 29.3 bits (64), Expect = 3.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCK 92
+G + F C Q+ GS C G + W+S PVC+
Sbjct: 370 LGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCE 409
>gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]
Length = 993
Score = 36.2 bits (82), Expect = 0.029
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 54 GTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVPPHETFG------------ 101
GTV+ ++C +Q+VGS +L C W WS P C+ V G
Sbjct: 731 GTVVTYQCYPGYQVVGSSVLMCQWD---LTWSEDLPSCQRVTSCHDPGDVEHSRRLISSP 787
Query: 102 -FKVAVIASIVSCAIILLMSMAFLTC 126
F V + +LM + LTC
Sbjct: 788 KFPVGATVQYICDQGFVLMGSSILTC 813
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTC-TWKGSIAEWSSGSPVCKL 93
VG + + C ++GS +LTC + +WS +P C L
Sbjct: 791 VGATVQYICDQGFVLMGSSILTCHDRQAGSPKWSDRAPKCLL 832
>gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]
Length = 994
Score = 36.2 bits (82), Expect = 0.029
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 54 GTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLVPPHETFG------------ 101
GTV+ ++C +Q+VGS +L C W WS P C+ V G
Sbjct: 731 GTVVTYQCYPGYQVVGSSVLMCQWD---LTWSEDLPSCQRVTSCHDPGDVEHSRRLISSP 787
Query: 102 -FKVAVIASIVSCAIILLMSMAFLTC 126
F V + +LM + LTC
Sbjct: 788 KFPVGATVQYICDQGFVLMGSSILTC 813
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 53 VGTVLMFRCPSNHQMVGSGLLTC-TWKGSIAEWSSGSPVCKL 93
VG + + C ++GS +LTC + +WS +P C L
Sbjct: 791 VGATVQYICDQGFVLMGSSILTCHDRQAGSPKWSDRAPKCLL 832
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 35.8 bits (81), Expect = 0.037
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 46 LRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV----PPHETFG 101
+ G S G ++++ C Q+ G + TC G WSS P C + PPH FG
Sbjct: 2567 VEGADYSYGAIIIYSCFPGFQVAGHAMQTCEESG----WSSSIPTCMPIDCGLPPHIDFG 2622
Score = 33.9 bits (76), Expect = 0.14
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 33 AKLRLPPQATFQ-VLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVC 91
AK PP Q VL+ VG V+ F C H + G +L C +W+ PVC
Sbjct: 2321 AKCPEPPLLENQLVLKELTTEVG-VVTFSCKEGHVLQGPSVLKCL---PSQQWNDSFPVC 2376
Query: 92 KLV----PPHETFGFKV 104
K+V PP +FG +
Sbjct: 2377 KIVLCTPPPLISFGVPI 2393
Score = 31.6 bits (70), Expect = 0.70
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 37 LPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
LP LR S+G+ + + C H + GS L C +WS SP C+ +
Sbjct: 2719 LPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCL---ENRKWSGASPRCEAI 2773
Score = 31.2 bits (69), Expect = 0.92
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 52 SVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCKLV 94
+VG + F C +Q++G +TC G EW+ P CK V
Sbjct: 1806 TVGAEVTFSCQEGYQLMGVTKITCLESG---EWNHLIPYCKAV 1845
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 15 RGRAGVTTPAPGNRTGTCAKLRL--PPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGL 72
R R + + T C +R PPQ V G + F C + + G+
Sbjct: 2869 RSRVCLANGSWSGATPDCVPVRCATPPQLANGVTEGLDYGFMKEVTFHCHEGYILHGAPK 2928
Query: 73 LTCTWKGSIAEWSSGSPVCKLV---PPHE 98
LTC G+ W + P+CK V PP +
Sbjct: 2929 LTCQSDGN---WDAEIPLCKPVNCGPPED 2954
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 38 PPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGS-PVC 91
PP ++G VG+ + F C +++VG TC G +W+ S P C
Sbjct: 2267 PPPIQNGFMKGENFEVGSKVQFFCNEGYELVGDSSWTCQKSG---KWNKKSNPKC 2318
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 56 VLMFRCPSNHQMVGSGLLTCTWKGSIAEWSSGSPVCK 92
V+ + C S + + GS L CT KG WS PVC+
Sbjct: 3085 VITYSCRSGYVIQGSSDLICTEKG---VWSQPYPVCE 3118
Score = 28.1 bits (61), Expect = 7.8
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 21 TTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGS 80
T P P +C +PP + G+ + ++C + + ++G + CT GS
Sbjct: 1679 TQPLPHCERISCG---VPPPLENGFHSADDFYAGSTVTYQCNNGYYLLGDSRMFCTDNGS 1735
Query: 81 IAEWSSGSPVC 91
W+ SP C
Sbjct: 1736 ---WNGVSPSC 1743
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,062,622
Number of Sequences: 37866
Number of extensions: 517511
Number of successful extensions: 2171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 263
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.