Guide to the Human Genome
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Name: SUSD3 Sequence: fasta or formatted (255aa) NCBI GI: 21450717
Description:

sushi domain containing 3

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         27           3
 C cysteine            3.1          8           2
 D aspartate           2.4          6           1
 E glutamate           2.0          5           1
 F phenylalanine       2.7          7           1
 G glycine             8.2         21           1
 H histidine           2.7          7           1
 I isoleucine          2.4          6           2
 K lysine              5.5         14           2
 L leucine             9.4         24           2
 M methionine          3.1          8           1
 N asparagine          2.7          7           1
 P proline             7.5         19           2
 Q glutamine           4.7         12           2
 R arginine            6.3         16           3
 S serine             11.0         28           4
 T threonine           6.7         17           2
 V valine              6.7         17           1
 W tryptophan          1.6          4           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sushi domain containing 3 
SEZ6L2                0.039   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.039   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.039   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
SEZ6L2                0.039   seizure related 6 homolog (mouse)-like 2 isoform 1 [H...
SELE                  0.034   selectin E precursor 
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.030   CD46 antigen, complement regulatory protein isoform ...
CR1                   0.030   complement receptor 1 isoform S precursor 
CR1                   0.030   complement receptor 1 isoform F precursor 
CSMD2                 0.028   CUB and Sushi multiple domains 2 
CSMD1                 0.026   CUB and Sushi multiple domains 1 
PAMR1                 0.022   regeneration associated muscle protease isoform b [H...
PAMR1                 0.022   regeneration associated muscle protease isoform a [H...
CR1L                  0.022   complement component (3b/4b) receptor 1-like 
SEZ6                  0.022   seizure related 6 homolog isoform 2 
SEZ6                  0.022   seizure related 6 homolog isoform 1 
SVEP1                 0.022   polydom 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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