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Search of human proteins with 214010240
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|214010240 lectin, mannose-binding 2-like isoform 1 [Homo
sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|214010240 lectin, mannose-binding 2-like isoform 1 [Homo sapi... 743 0.0
gi|13540594 lectin, mannose-binding 2-like isoform 2 [Homo sapiens] 712 0.0
gi|5803023 lectin, mannose-binding 2 precursor [Homo sapiens] 382 e-106
gi|5031873 lectin, mannose-binding, 1 precursor [Homo sapiens] 150 2e-36
gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens] 112 7e-25
gi|150378498 fragile site-associated protein [Homo sapiens] 33 0.40
gi|23111026 sorting nexin 11 [Homo sapiens] 30 3.3
gi|23111028 sorting nexin 11 [Homo sapiens] 30 3.3
gi|154759291 serine (or cysteine) proteinase inhibitor, clade A ... 30 4.4
gi|7705879 serine (or cysteine) proteinase inhibitor, clade A (a... 30 4.4
gi|4585643 zinc finger protein 264 [Homo sapiens] 30 4.4
gi|54112390 calcium channel, voltage-dependent, alpha 2/delta su... 29 5.7
gi|116686120 periaxin isoform 2 [Homo sapiens] 29 7.5
gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens] 29 7.5
gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens] 29 7.5
gi|40353757 brain and reproductive organ-expressed (TNFRSF1A mod... 28 9.7
gi|40353755 brain and reproductive organ-expressed (TNFRSF1A mod... 28 9.7
gi|40353759 brain and reproductive organ-expressed (TNFRSF1A mod... 28 9.7
gi|40353761 brain and reproductive organ-expressed (TNFRSF1A mod... 28 9.7
gi|21361171 brain and reproductive organ-expressed (TNFRSF1A mod... 28 9.7
gi|209413732 poliovirus receptor isoform delta [Homo sapiens] 28 9.7
gi|209413726 poliovirus receptor isoform alpha [Homo sapiens] 28 9.7
>gi|214010240 lectin, mannose-binding 2-like isoform 1 [Homo
sapiens]
Length = 359
Score = 743 bits (1917), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP 60
MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP
Sbjct: 1 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP 60
Query: 61 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ 120
YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ
Sbjct: 61 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ 120
Query: 121 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ 180
GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ
Sbjct: 121 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ 180
Query: 181 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID 240
RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID
Sbjct: 181 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID 240
Query: 241 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV 300
GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV
Sbjct: 241 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV 300
Query: 301 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 359
FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
Sbjct: 301 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 359
>gi|13540594 lectin, mannose-binding 2-like isoform 2 [Homo sapiens]
Length = 348
Score = 712 bits (1838), Expect = 0.0
Identities = 348/359 (96%), Positives = 348/359 (96%), Gaps = 11/359 (3%)
Query: 1 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP 60
MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP
Sbjct: 1 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP 60
Query: 61 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ 120
YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ
Sbjct: 61 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ 120
Query: 121 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ 180
GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQE
Sbjct: 121 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQE----------- 169
Query: 181 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID 240
RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID
Sbjct: 170 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID 229
Query: 241 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV 300
GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV
Sbjct: 230 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV 289
Query: 301 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 359
FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
Sbjct: 290 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 348
>gi|5803023 lectin, mannose-binding 2 precursor [Homo sapiens]
Length = 356
Score = 382 bits (980), Expect = e-106
Identities = 194/372 (52%), Positives = 252/372 (67%), Gaps = 32/372 (8%)
Query: 3 ATLGPLGSWQQWRRCLSARDG--------SRMLLLLLLLGSGQGPQQVGAGQTFEYLKRE 54
A G + W RRCL R G + L LLLLLGS G E+LKRE
Sbjct: 2 AAEGWIWRWGWGRRCLG-RPGLLGPGPGPTTPLFLLLLLGSVTADITDGNS---EHLKRE 57
Query: 55 HSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVH 114
HSL KPYQGVG+ S LW+ G+ M+ +QY+RLTPD +SK+G++WN PCFL+DWE+ VH
Sbjct: 58 HSLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVH 117
Query: 115 FKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRR 174
FK+HG GKKNLHGDG+A+WYT+DR+ PGPVFG+ D F GL +F+DTYPN+E
Sbjct: 118 FKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDET-------- 169
Query: 175 YSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLT 234
+RVFPYIS MVNNGSLSYDH +DGR TEL GCTA RN +DTFL +RY + LT
Sbjct: 170 ----TERVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLT 225
Query: 235 IMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEE 294
+M D++ K+EW++CI++ GVRLP GYYFG S+ TGDLSDNHD+IS+KLF+L VE TP+EE
Sbjct: 226 VMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMVEHTPDEE 285
Query: 295 KLHRDVFLPSVDNMKLPEMTAPLP-------PLSGLALFLIVFFSLVFSVFAIVIGIILY 347
+ PSV+ +K P+ P PL+G +FL++ +L+ V V+G +++
Sbjct: 286 SIDWTKIEPSVNFLKSPKDNVDDPTGNFRSGPLTGWRVFLLLLCALLGIVVCAVVGAVVF 345
Query: 348 NKWQEQSRKRFY 359
K QE++ KRFY
Sbjct: 346 QKRQERN-KRFY 356
>gi|5031873 lectin, mannose-binding, 1 precursor [Homo sapiens]
Length = 510
Score = 150 bits (378), Expect = 2e-36
Identities = 90/282 (31%), Positives = 144/282 (51%), Gaps = 29/282 (10%)
Query: 15 RRCLSARDGSRMLLLLLLLGS-------GQGPQQVGAGQTFEYLKREHSLSKPYQGVGTG 67
+R L AR LLL LG G P + FEY ++S P+ G
Sbjct: 6 QRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEY---KYSFKGPHLVQSDG 62
Query: 68 SSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQGKKNLHG 127
+ W GNA+ + IR+ P ++S++G++W + +WE++V F++ G+G+ +
Sbjct: 63 TVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGR--IGA 120
Query: 128 DGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYIS 187
DGLAIWY +++ GPVFG+ D + G+G+F D++ N+ K+ P I
Sbjct: 121 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN--------------PAIV 166
Query: 188 AMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHE 244
+ NNG + YDH+ DG L C RN Y I Y + LT+M++ K++
Sbjct: 167 IIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKND 226
Query: 245 WRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELT 286
+ C +V + +P +FG S+ TG L+D+HDV+S F+LT
Sbjct: 227 YEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLT 268
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 302 LPSVDNMKLPEMTAPLPPL-SGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 359
+PS + K PE LPP S L+ + F +V +V + IG I+Y QE + K+F+
Sbjct: 458 MPSNEKPKCPE----LPPFPSCLSTVHFIIFVVVQTV--LFIGYIMYRSQQEAAAKKFF 510
>gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens]
Length = 526
Score = 112 bits (279), Expect = 7e-25
Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 23/272 (8%)
Query: 23 GSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKPYQGVGTGSSSLWNLMGNAMVMT 82
G LLLLLL + FEY + S P + W+ G+A++
Sbjct: 8 GPLFCLLLLLLDPHSPETGCPPLRRFEY---KLSFKGPRLALPGAGIPFWSHHGDAILGL 64
Query: 83 QYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPG 142
+ +RLTP M+++ GA+W+R WE++V ++ G G++ G+A+WYT+ R G
Sbjct: 65 EEVRLTPSMRNRSGAVWSRASVPFSAWEVEVQMRVTGLGRRG--AQGMAVWYTRGRGHVG 122
Query: 143 PVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERD 202
V G + + G+G+F D+ P E+ Q P I + ++G + + D
Sbjct: 123 SVLGGLASWDGIGIFFDS-PAEDTQDS--------------PAIRVLASDGHIPSEQPGD 167
Query: 203 GRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMD--IDGKHEWRDCIEVPGVRLPRGY 260
G LG C RN + I Y + L + ++ + C++V + L G
Sbjct: 168 GASQGLGSCHWDFRNRPHPFRARITYWGQRLRMSLNSGLTPSDPGEFCVDVGPLLLVPGG 227
Query: 261 YFGTSSITGDLSDNHDVISLKLFELTVERTPE 292
+FG S+ TG L+D+HDV+S F L+ E +PE
Sbjct: 228 FFGVSAATGTLADDHDVLSFLTFSLS-EPSPE 258
>gi|150378498 fragile site-associated protein [Homo sapiens]
Length = 5005
Score = 33.1 bits (74), Expect = 0.40
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 45 GQTFEYLKREHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPC 104
G+ Y+ E +S P + T SSS W +G + D + +G+ + P
Sbjct: 754 GEDDMYMDFEEVISSPVLSLSTSSSSGWTAVG----------MENDKKENEGSAKSIHPL 803
Query: 105 FLRDWELQV---HFKIHGQ 120
LR W++ V +K+HG+
Sbjct: 804 ALRPWDITVLVNLYKVHGR 822
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 30.0 bits (66), Expect = 3.3
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 291 PEEEKLHRDVFLPSVDNMKLPEMTAP-LPPLS 321
P EEK H +V+ P VD+ ++P + +P LPPLS
Sbjct: 197 PSEEKDHLEVWAPVVDS-EVPSLESPTLPPLS 227
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 30.0 bits (66), Expect = 3.3
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 291 PEEEKLHRDVFLPSVDNMKLPEMTAP-LPPLS 321
P EEK H +V+ P VD+ ++P + +P LPPLS
Sbjct: 197 PSEEKDHLEVWAPVVDS-EVPSLESPTLPPLS 227
>gi|154759291 serine (or cysteine) proteinase inhibitor, clade A
(alpha-1 antiproteinase, antitrypsin), member 10 [Homo
sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 39 PQQVGAGQ---TFEYLKREHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDM 91
P GAG+ TF+ R H L PYQG T L MG+ + + Y LT D+
Sbjct: 267 PMMYGAGKFASTFDKNFRCHVLKLPYQGNATMLVVLMEKMGDHLALEDY--LTTDL 320
>gi|7705879 serine (or cysteine) proteinase inhibitor, clade A
(alpha-1 antiproteinase, antitrypsin), member 10 [Homo
sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 39 PQQVGAGQ---TFEYLKREHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDM 91
P GAG+ TF+ R H L PYQG T L MG+ + + Y LT D+
Sbjct: 267 PMMYGAGKFASTFDKNFRCHVLKLPYQGNATMLVVLMEKMGDHLALEDY--LTTDL 320
>gi|4585643 zinc finger protein 264 [Homo sapiens]
Length = 627
Score = 29.6 bits (65), Expect = 4.4
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 15 RRCLSARDGSRMLLLLLLLGSGQGPQQ-VGAGQTFEYL------KREHSLSKPYQGVGTG 67
+ C A + L+ + +G+ P + V G+ F + KR HS KPY+ V G
Sbjct: 458 KECGKAFSNRKDLIRHFSIHTGEKPYECVECGKAFTRMSGLTRHKRIHSGEKPYECVECG 517
Query: 68 SSSLW--NLMGNAMVMT 82
S W NL+ +A++ T
Sbjct: 518 KSFCWSTNLIRHAIIHT 534
>gi|54112390 calcium channel, voltage-dependent, alpha 2/delta
subunit 1 [Homo sapiens]
Length = 1091
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 161 YPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNG-SLSYDHERDGRPTEL-GGCTAIVRNL 218
Y N + + +K PG QR+ P N G +SY H PT++ G T ++ L
Sbjct: 124 YYNAKDDLDPEKNDSEPGSQRIKPVFIEDANFGRQISYQHAAVHIPTDIYEGSTIVLNEL 183
Query: 219 HYDTFL 224
++ + L
Sbjct: 184 NWTSAL 189
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 28.9 bits (63), Expect = 7.5
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 251 VPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKL 310
VP VRLP S + V ++L E+ + + PE + ++ LP V MKL
Sbjct: 538 VPEVRLPEVQLPKVSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKV--PEMKLPKVPEMKL 595
Query: 311 PEMTAP---LPPLSGLAL 325
PEM P LP + +A+
Sbjct: 596 PEMKLPEVQLPKVPEMAV 613
>gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens]
Length = 450
Score = 28.9 bits (63), Expect = 7.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 290 TPEEEKLHRDVFLPSVDNMKLPEM---TAPLPPLSGLALFLIVFFSLVF 335
T +++ H V + SV KL + +PL ++G++LFLI+ L+F
Sbjct: 310 TGRQDETHFTVIITSVGLEKLAQKGKSLSPLASITGISLFLIISMCLLF 358
>gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens]
Length = 462
Score = 28.9 bits (63), Expect = 7.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 290 TPEEEKLHRDVFLPSVDNMKLPEM---TAPLPPLSGLALFLIVFFSLVF 335
T +++ H V + SV KL + +PL ++G++LFLI+ L+F
Sbjct: 322 TGRQDETHFTVIITSVGLEKLAQKGKSLSPLASITGISLFLIISMCLLF 370
>gi|40353757 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 2 [Homo sapiens]
Length = 383
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 169 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTEL-GGCTAIVRNLHYDTF 223
E R SP + P+IS++V NG + D R T+L GCT++ + D F
Sbjct: 4 EVALNRISPMLS---PFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRF 56
>gi|40353755 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 3 [Homo sapiens]
Length = 376
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 169 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTEL-GGCTAIVRNLHYDTF 223
E R SP + P+IS++V NG + D R T+L GCT++ + D F
Sbjct: 4 EVALNRISPMLS---PFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRF 56
>gi|40353759 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 3 [Homo sapiens]
Length = 376
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 169 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTEL-GGCTAIVRNLHYDTF 223
E R SP + P+IS++V NG + D R T+L GCT++ + D F
Sbjct: 4 EVALNRISPMLS---PFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRF 56
>gi|40353761 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 2 [Homo sapiens]
Length = 383
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 169 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTEL-GGCTAIVRNLHYDTF 223
E R SP + P+IS++V NG + D R T+L GCT++ + D F
Sbjct: 4 EVALNRISPMLS---PFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRF 56
>gi|21361171 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 1 [Homo sapiens]
Length = 415
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 169 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTEL-GGCTAIVRNLHYDTF 223
E R SP + P+IS++V NG + D R T+L GCT++ + D F
Sbjct: 4 EVALNRISPMLS---PFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRF 56
>gi|209413732 poliovirus receptor isoform delta [Homo sapiens]
Length = 392
Score = 28.5 bits (62), Expect = 9.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 321 SGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRK 356
SG++ I+F L VF I++GI +Y W + SR+
Sbjct: 338 SGISRNAIIFLVLGILVFLILLGIGIYFYWSKCSRE 373
>gi|209413726 poliovirus receptor isoform alpha [Homo sapiens]
Length = 417
Score = 28.5 bits (62), Expect = 9.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 321 SGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRK 356
SG++ I+F L VF I++GI +Y W + SR+
Sbjct: 338 SGISRNAIIFLVLGILVFLILLGIGIYFYWSKCSRE 373
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,159,310
Number of Sequences: 37866
Number of extensions: 713786
Number of successful extensions: 1456
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 34
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.