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Name: BRE Sequence: fasta or formatted (383aa) NCBI GI: 40353757
Description:

brain and reproductive organ-expressed (TNFRSF1A modulator) isoform 2

Referenced in:

Additional Brain Proteins
DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [415aa] brain and reproductive organ-expressed (TNFRSF1A modulator) isofo...
alt prot [376aa] brain and reproductive organ-expressed (TNFRSF1A modulator) isofo...
alt prot [376aa] brain and reproductive organ-expressed (TNFRSF1A modulator) isofo...
alt mRNA [383aa] brain and reproductive organ-expressed (TNFRSF1A modulator) isofo...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         24           2
 C cysteine            2.1          8           1
 D aspartate           4.7         18           1
 E glutamate           6.3         24           2
 F phenylalanine       6.8         26           2
 G glycine             5.7         22           3
 H histidine           2.3          9           1
 I isoleucine          3.9         15           2
 K lysine              5.0         19           2
 L leucine            11.7         45           3
 M methionine          1.6          6           1
 N asparagine          4.7         18           2
 P proline             7.3         28           2
 Q glutamine           5.0         19           2
 R arginine            3.7         14           2
 S serine              6.5         25           2
 T threonine           4.7         18           1
 V valine              5.5         21           2
 W tryptophan          1.3          5           1
 Y tyrosine            5.0         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   brain and reproductive organ-expressed (TNFRSF1A mod... 
BRE                   1.000   brain and reproductive organ-expressed (TNFRSF1A mod...
BRE                   0.947   brain and reproductive organ-expressed (TNFRSF1A mod...
BRE                   0.947   brain and reproductive organ-expressed (TNFRSF1A mod...
BRE                   0.947   brain and reproductive organ-expressed (TNFRSF1A mod...
C10orf79              0.006   hypothetical protein LOC80217 
PIK3C2A               0.006   phosphoinositide-3-kinase, class 2 alpha polypeptid...
DNAH8                 0.006   dynein, axonemal, heavy polypeptide 8 
KRT23                 0.006   keratin 23 
FAT3                  0.006   FAT tumor suppressor homolog 3 
RAD23A                0.005   UV excision repair protein RAD23 homolog A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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