Search of human proteins with 21361902

Search of human proteins with 21361902

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361902 cadherin-like 26 isoform b [Homo sapiens]
         (165 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361902 cadherin-like 26 isoform b [Homo sapiens]                 339   7e-94
gi|29570800 cadherin-like 26 isoform a [Homo sapiens]                 325   1e-89
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]                31   0.56 
gi|166362713 cadherin 5, type 2 preproprotein [Homo sapiens]           30   0.73 
gi|217416372 coiled-coil domain containing 142 [Homo sapiens]          30   0.73 
gi|115430243 SCY1-like 1 isoform B [Homo sapiens]                      30   1.2  
gi|115430241 SCY1-like 1 isoform A [Homo sapiens]                      30   1.2  
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo...    30   1.2  
gi|54112397 calcium channel, voltage-dependent, alpha 2/delta 3 ...    28   3.6  
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]        28   4.7  
gi|27363458 leucine rich repeat and fibronectin type III domain ...    28   4.7  
gi|112420960 hypothetical protein LOC374467 [Homo sapiens]             28   4.7  
gi|239752693 PREDICTED: similar to hCG2041787 [Homo sapiens]           27   6.2  
gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens]           27   6.2  
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s...    27   6.2  
gi|188219541 DENN/MADD domain containing 1B isoform 2 [Homo sapi...    27   6.2  
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]      27   8.0  
gi|110347431 latent transforming growth factor beta binding prot...    27   8.0  
gi|19923599 calmin [Homo sapiens]                                      27   8.0  

>gi|21361902 cadherin-like 26 isoform b [Homo sapiens]
          Length = 165

 Score =  339 bits (869), Expect = 7e-94
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MKPLIWTWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKP 60
           MKPLIWTWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKP
Sbjct: 1   MKPLIWTWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKP 60

Query: 61  FEPRSVKNIHSTPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEE 120
           FEPRSVKNIHSTPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEE
Sbjct: 61  FEPRSVKNIHSTPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEE 120

Query: 121 GECGGAPSLSSLASLEQELQPDLLDSLGSKATPFEEIYSESGVPS 165
           GECGGAPSLSSLASLEQELQPDLLDSLGSKATPFEEIYSESGVPS
Sbjct: 121 GECGGAPSLSSLASLEQELQPDLLDSLGSKATPFEEIYSESGVPS 165


>gi|29570800 cadherin-like 26 isoform a [Homo sapiens]
          Length = 832

 Score =  325 bits (833), Expect = 1e-89
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 7   TWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFEPRSV 66
           TWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFEPRSV
Sbjct: 674 TWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFEPRSV 733

Query: 67  KNIHSTPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGA 126
           KNIHSTPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGA
Sbjct: 734 KNIHSTPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGA 793

Query: 127 PSLSSLASLEQELQPDLLDSLGSKATPFEEIYSESGVPS 165
           PSLSSLASLEQELQPDLLDSLGSKATPFEEIYSESGVPS
Sbjct: 794 PSLSSLASLEQELQPDLLDSLGSKATPFEEIYSESGVPS 832


>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
          Length = 1541

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 21  CTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYG 58
           C+    P  GV      PP    +  +A C  G WG G
Sbjct: 744 CSCGGAPCHGVTGQCRCPPGRTGEDCEADCPEGRWGLG 781


>gi|166362713 cadherin 5, type 2 preproprotein [Homo sapiens]
          Length = 784

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 90  GRMAETLNQKLHVANVLEDDPGY-LPHVYSEEGECGGAPSLSSLA--SLEQELQPDLLDS 146
           G MA  +  K   A+   D P Y   H+Y  EG    A SLSSL   S + ++  D L+ 
Sbjct: 703 GEMAAMIEVKKDEADHDGDGPPYDTLHIYGYEGSESIAESLSSLGTDSSDSDVDYDFLND 762

Query: 147 LGSKATPFEEIY 158
            G +     E+Y
Sbjct: 763 WGPRFKMLAELY 774


>gi|217416372 coiled-coil domain containing 142 [Homo sapiens]
          Length = 743

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 89  EGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGAPSLSSLASLEQELQPDLLDSL 147
           E  +A   ++ LH + +   D G+   + S  G     P+ S  A L Q+L P LLD+L
Sbjct: 348 EKELASLCHRLLHQSLIWSWDQGFCQALGSALGGQSSLPTSSGTAELLQQLFPPLLDAL 406


>gi|115430243 SCY1-like 1 isoform B [Homo sapiens]
          Length = 791

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 111 GYLPHVYSEEGECGGAPSLSSLASLEQELQPDLLDSLG 148
           G L ++YS +G  GG P    +  LEQ   P+L DS G
Sbjct: 158 GGLDYMYSAQGN-GGGPPRKGIPELEQYDPPELADSSG 194


>gi|115430241 SCY1-like 1 isoform A [Homo sapiens]
          Length = 808

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 111 GYLPHVYSEEGECGGAPSLSSLASLEQELQPDLLDSLG 148
           G L ++YS +G  GG P    +  LEQ   P+L DS G
Sbjct: 158 GGLDYMYSAQGN-GGGPPRKGIPELEQYDPPELADSSG 194


>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
            sapiens]
          Length = 2517

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 121  GECGGAPSLSSLASLEQELQPDLLDSLGSKATPFEEIY 158
            G  GGAP +  L  L++ L+P ++ S    AT FE  Y
Sbjct: 1560 GLIGGAPGVEMLGQLQRHLEPIMVLSGLELATTFEHFY 1597


>gi|54112397 calcium channel, voltage-dependent, alpha 2/delta 3
            subunit [Homo sapiens]
          Length = 1091

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 85   LAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEG--ECGGAPSLSS 131
            +AP+E R  E+L  +   A  +   P      + EE   ECGGAPSL +
Sbjct: 1027 MAPIEIRYNESLKCERLKAQKIRRRPESCHGFHPEENARECGGAPSLQA 1075


>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
          Length = 1035

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 19/98 (19%)

Query: 71  STPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGAPSLS 130
           S  A PDAT    +L P+ G         LH + +           YS       A S+S
Sbjct: 520 SASAPPDATSAHLMLKPILG--------PLHNSEIGSSS-------YSRISVTAAASSIS 564

Query: 131 SLASLEQELQPDLLDSLGS----KATPFEEIYSESGVP 164
           SL++++  L P      GS    K TP    +S    P
Sbjct: 565 SLSTIQGTLTPTFKPIFGSIDPLKTTPMIAPFSSKQTP 602


>gi|27363458 leucine rich repeat and fibronectin type III domain
           containing 4 [Homo sapiens]
          Length = 635

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 9   SDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFEP 63
           S  EG RP      A+A      +   E  P+       A   L SWG G+P +P
Sbjct: 377 SSAEGGRPGPSDIAASARTAAEGEGTLESEPAVQVTEVTATSGLVSWGPGRPADP 431


>gi|112420960 hypothetical protein LOC374467 [Homo sapiens]
          Length = 1197

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 57   YGKPFEPRSVKNIHSTPAYPDATM---HRQLLAPVEGRMAETLNQKLHVANVLEDDPGYL 113
            +G+  E RS    ++ P  P   +   H  LLA ++ R+  T+ ++++  N  +D   +L
Sbjct: 948  FGETIEFRSSNTKYANPLQPLKNIYLPHVMLLAKIKMRIGHTVAKQVYYKNKRKDPSKWL 1007

Query: 114  PHVY 117
            P ++
Sbjct: 1008 PALH 1011


>gi|239752693 PREDICTED: similar to hCG2041787 [Homo sapiens]
          Length = 269

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 5   IWTWSDVEGQ--RPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFE 62
           IW   D+  Q  RP++ +  A +    G    E  P +    +  AR  L   G G P  
Sbjct: 83  IWASMDLGSQAGRPSVSVSEAPSPEGAG----ESAPSADRGPATLARAPLRRAGIGCPEG 138

Query: 63  PRSVKNIHSTPAYPDA 78
           P   +   +TP  P+A
Sbjct: 139 PVGFRRPRATPGTPEA 154


>gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens]
          Length = 269

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 5   IWTWSDVEGQ--RPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFE 62
           IW   D+  Q  RP++ +  A +    G    E  P +    +  AR  L   G G P  
Sbjct: 83  IWASMDLGSQAGRPSVSVSEAPSPEGAG----ESAPSADRGPATLARAPLRRAGIGCPEG 138

Query: 63  PRSVKNIHSTPAYPDA 78
           P   +   +TP  P+A
Sbjct: 139 PVGFRRPRATPGTPEA 154


>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
            sapiens]
          Length = 4911

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 78   ATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGAPSLSSLAS--L 135
            +T H  + AP    ++ET       +      P  LP    +E      PS  ++A+  L
Sbjct: 3623 STPHSDITAPPTPGISET------TSTPAVSTPSELPQQADQESVEPVGPSTPNMAAGQL 3676

Query: 136  EQELQPDLLDSLGSKATPFEEIYSESGV 163
              EL+  L +S  S+ATP ++ Y+ S V
Sbjct: 3677 CTELENKLPNSDFSQATPNQQTYANSEV 3704


>gi|188219541 DENN/MADD domain containing 1B isoform 2 [Homo
           sapiens]
          Length = 426

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 95  TLNQKLHVA--NVLEDDPGYLPHVYSEEGECGGAPSLSSLASLEQ 137
           ++NQ++ +A   VL+D P  +PH Y    +  G P++    +L +
Sbjct: 148 SVNQEIFIACEQVLKDQPALVPHSYFIAPDVTGLPTIPESRNLTE 192


>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
          Length = 706

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 82  RQLLAPVEGR----MAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGAPSLSSLASLEQ 137
           R  LAP E R    ++  LN+    A +   DPG LP    EE E  G  S  +   + Q
Sbjct: 16  RGWLAPREARGGPSLSSVLNELPSAATLRYRDPGVLPWGALEEEEEDGGRSRKAFTEVTQ 75

Query: 138 -ELQ 140
            ELQ
Sbjct: 76  TELQ 79


>gi|110347431 latent transforming growth factor beta binding
          protein 4 isoform a [Homo sapiens]
          Length = 1624

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 13 GQRPALLI--------CTAAAGPTQGVKDLEEVP--PSAASQSAQARCALG 53
          G+RP LL+         T+AA P+     + EVP  PS  +  A  RC  G
Sbjct: 8  GRRPLLLVLLLPLFAAATSAASPSPSPSQVVEVPGVPSRPASVAVCRCCPG 58


>gi|19923599 calmin [Homo sapiens]
          Length = 1002

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 106 LEDDPGYLPHVYSEEGECGGAPSLSSLASLEQELQPDLLDSL 147
           LE+  GY+P + S E E  G+ S SS +S+  E  P   D +
Sbjct: 757 LEEPEGYMPDLDSREEEADGSQS-SSSSSVPGESLPSASDQV 797


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,587,938
Number of Sequences: 37866
Number of extensions: 344187
Number of successful extensions: 716
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 20
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.