Guide to the Human Genome
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Name: CDH26 Sequence: fasta or formatted (165aa) NCBI GI: 21361902
Description:

cadherin-like 26 isoform b

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [832aa] cadherin-like 26 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         17           3
 C cysteine            1.8          3           1
 D aspartate           4.2          7           2
 E glutamate           9.1         15           2
 F phenylalanine       1.2          2           1
 G glycine             7.9         13           2
 H histidine           2.4          4           1
 I isoleucine          2.4          4           1
 K lysine              3.6          6           1
 L leucine            10.9         18           2
 M methionine          1.8          3           1
 N asparagine          1.8          3           1
 P proline             9.7         16           2
 Q glutamine           4.8          8           1
 R arginine            3.0          5           1
 S serine             10.3         17           2
 T threonine           4.2          7           1
 V valine              5.5          9           1
 W tryptophan          1.8          3           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cadherin-like 26 isoform b 
CDH26                 0.955   cadherin-like 26 isoform a 
MEGF6                 0.019   EGF-like-domain, multiple 3 
CDH5                  0.016   cadherin 5, type 2 preproprotein 
CCDC142               0.016   coiled-coil domain containing 142 
SCYL1                 0.016   SCY1-like 1 isoform B 
SCYL1                 0.016   SCY1-like 1 isoform A 
CUL9                  0.016   p53-associated parkin-like cytoplasmic protein [Homo...
CACNA2D3              0.010   calcium channel, voltage-dependent, alpha 2/delta 3 ...
POM121L2              0.010   POM121 membrane glycoprotein-like 2 
LRFN4                 0.010   leucine rich repeat and fibronectin type III domain ...
C12orf63              0.010   hypothetical protein LOC374467 
LOC100128221          0.006   PREDICTED: similar to hCG2041787 
LOC100128221          0.006   PREDICTED: similar to hCG2041787 
MLL3                  0.006   myeloid/lymphoid or mixed-lineage leukemia 3 
DENND1B               0.006   DENN/MADD domain containing 1B isoform 2 
TMC4                  0.006   transmembrane channel-like 4 isoform 2 
LTBP4                 0.006   latent transforming growth factor beta binding prot...
CLMN                  0.006   calmin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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