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Search of human proteins with 21361805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo
sapiens]
(447 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo sapi... 923 0.0
gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens] 33 0.53
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens] 32 0.90
gi|239756611 PREDICTED: hypothetical protein [Homo sapiens] 31 2.0
gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo ... 31 2.0
gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo ... 31 2.0
gi|57165412 acyl-CoA synthetase long-chain family member 6 isofo... 31 2.6
gi|57165410 acyl-CoA synthetase long-chain family member 6 isofo... 31 2.6
gi|116295258 integrin alpha 2 precursor [Homo sapiens] 30 4.4
gi|56119110 family with sequence similarity 13, member A1 isofor... 30 4.4
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro... 30 5.8
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop... 30 5.8
gi|241896935 WD repeat domain 25 [Homo sapiens] 29 7.6
gi|241896933 WD repeat domain 25 [Homo sapiens] 29 7.6
gi|98986457 host cell factor 1 [Homo sapiens] 29 7.6
gi|103471989 kaptin (actin binding protein) [Homo sapiens] 29 7.6
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 29 9.9
gi|110611237 coagulation factor XIII B subunit precursor [Homo s... 29 9.9
gi|10834992 interleukin 13 receptor, alpha 2 precursor [Homo sap... 29 9.9
gi|37574601 zinc finger protein 232 [Homo sapiens] 29 9.9
>gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo
sapiens]
Length = 447
Score = 923 bits (2385), Expect = 0.0
Identities = 447/447 (100%), Positives = 447/447 (100%)
Query: 1 MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKNDDSRPWLTCS 60
MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKNDDSRPWLTCS
Sbjct: 1 MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKNDDSRPWLTCS 60
Query: 61 CQGMLTCAGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLIGEEQRPVFK 120
CQGMLTCAGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLIGEEQRPVFK
Sbjct: 61 CQGMLTCAGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLIGEEQRPVFK 120
Query: 121 QHIPANTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLE 180
QHIPANTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLE
Sbjct: 121 QHIPANTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLE 180
Query: 181 GQVDSLSVTLGPLGLPELMVSQPGCAYAILLCTWKKDTGSPPASEGPTDGSRETPAARDV 240
GQVDSLSVTLGPLGLPELMVSQPGCAYAILLCTWKKDTGSPPASEGPTDGSRETPAARDV
Sbjct: 181 GQVDSLSVTLGPLGLPELMVSQPGCAYAILLCTWKKDTGSPPASEGPTDGSRETPAARDV 240
Query: 241 VLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCTLDGTLKLMEEMEEADKLLWS 300
VLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCTLDGTLKLMEEMEEADKLLWS
Sbjct: 241 VLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCTLDGTLKLMEEMEEADKLLWS 300
Query: 301 VQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYAC 360
VQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYAC
Sbjct: 301 VQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYAC 360
Query: 361 KEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPV 420
KEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPV
Sbjct: 361 KEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPV 420
Query: 421 TRALLHQTLYHPDQPPQCAPSSLQDPT 447
TRALLHQTLYHPDQPPQCAPSSLQDPT
Sbjct: 421 TRALLHQTLYHPDQPPQCAPSSLQDPT 447
>gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens]
Length = 721
Score = 33.1 bits (74), Expect = 0.53
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 126 NTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEEL 160
N + + D DGDG +EL+VG D +R F+ +E+
Sbjct: 162 NVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEI 196
>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
Length = 4981
Score = 32.3 bits (72), Expect = 0.90
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 44 KVSVYKNDDSRPWLTCSCQGMLTCAGVGD--VCNKGKNLLVAVSAEGWFHL--FDLTPAK 99
K S+ ++ + S G+LT A D +C K + + A+ GW +
Sbjct: 3125 KYSISSGNEEGIFAINSSTGILTLAKALDYELCQKHEMTISAIDG-GWVARTGYCSVTVN 3183
Query: 100 VLDASGHHETLIGEEQRPVFKQHIPANTKVMLISDIDGDGCRELVVGYT 148
V+D + + + ++ P ++ P+ T V+ ++ D D V+ YT
Sbjct: 3184 VIDVNDNSPVFLSDDYFPTVLENAPSGTTVIHLNATDADSGTNAVIAYT 3232
>gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 31.2 bits (69), Expect = 2.0
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 219 GSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIG--NIKQGHGT 268
GS PA E T R T A + L Q SG++ + ST +G N ++G G+
Sbjct: 18 GSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGS 69
>gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo
sapiens]
Length = 166
Score = 31.2 bits (69), Expect = 2.0
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 219 GSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIG--NIKQGHGT 268
GS PA E T R T A + L Q SG++ + ST +G N ++G G+
Sbjct: 18 GSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGS 69
>gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo
sapiens]
Length = 166
Score = 31.2 bits (69), Expect = 2.0
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 219 GSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIG--NIKQGHGT 268
GS PA E T R T A + L Q SG++ + ST +G N ++G G+
Sbjct: 18 GSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGS 69
>gi|57165412 acyl-CoA synthetase long-chain family member 6 isoform
b [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 2.6
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 67 CAGVGDVCNKGKNLL-----------VAVSAEGWFHLFDL---TPA---KVLDASGHHET 109
C G G++C +G N+ A+ ++GW H D+ PA K++D H
Sbjct: 527 CKGEGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIFK 586
Query: 110 LI-GEEQRPVFKQHIPANTKVMLISDIDGDGCRELVVG 146
L GE P ++I ++ + + GD + +VG
Sbjct: 587 LAQGEYVAPEKIENIYIRSQPVAQIYVHGDSLKAFLVG 624
>gi|57165410 acyl-CoA synthetase long-chain family member 6 isoform
a [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 2.6
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 67 CAGVGDVCNKGKNLL-----------VAVSAEGWFHLFDL---TPA---KVLDASGHHET 109
C G G++C +G N+ A+ ++GW H D+ PA K++D H
Sbjct: 527 CKGEGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIFK 586
Query: 110 LI-GEEQRPVFKQHIPANTKVMLISDIDGDGCRELVVG 146
L GE P ++I ++ + + GD + +VG
Sbjct: 587 LAQGEYVAPEKIENIYIRSQPVAQIYVHGDSLKAFLVG 624
>gi|116295258 integrin alpha 2 precursor [Homo sapiens]
Length = 1181
Score = 30.0 bits (66), Expect = 4.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 16 GSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKNDDSRPWLTCSCQGML 65
GS F +C DVD DT+ ++++ +S K ++ R +L +G+L
Sbjct: 488 GSYFGSVLCSVDVDKDTITDVLLVGAPMYMSDLKKEEGRVYLFTIKEGIL 537
>gi|56119110 family with sequence similarity 13, member A1 isoform a
[Homo sapiens]
Length = 1023
Score = 30.0 bits (66), Expect = 4.4
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 272 GSGLFALCTLDGTLKLMEEMEEADKLLWSVQVD---HQLF--ALEKLDVTGNGHEEVVAC 326
G+G A+C ++L E+M++ + + Q D +LF +L++L+ G + A
Sbjct: 2 GAGALAICQSKAAVRLKEDMKKIVAVPLNEQKDFTYQKLFGVSLQELERQGLTENGIPAV 61
Query: 327 AWDGQTYIIDHNRTVV-RFQVDENIR 351
W+ Y+ H T F+V+ N++
Sbjct: 62 VWNIVEYLTQHGLTQEGLFRVNGNVK 87
>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
preproprotein [Homo sapiens]
Length = 813
Score = 29.6 bits (65), Expect = 5.8
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 52 DSRPWLTCSCQGMLTCAGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLI 111
D +PW T S + ++ +G LVA+ AEG L +L L A G+ ET
Sbjct: 47 DGQPWRTVSLEEPVSKPDMG---------LVALEAEGQELLLELEKNHRLLAPGYIETHY 97
Query: 112 GEEQRPV 118
G + +PV
Sbjct: 98 GPDGQPV 104
>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
preproprotein [Homo sapiens]
Length = 787
Score = 29.6 bits (65), Expect = 5.8
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 52 DSRPWLTCSCQGMLTCAGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLI 111
D +PW T S + ++ +G LVA+ AEG L +L L A G+ ET
Sbjct: 47 DGQPWRTVSLEEPVSKPDMG---------LVALEAEGQELLLELEKNHRLLAPGYIETHY 97
Query: 112 GEEQRPV 118
G + +PV
Sbjct: 98 GPDGQPV 104
>gi|241896935 WD repeat domain 25 [Homo sapiens]
Length = 544
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 70 VGDVCNKGKNLLVAVSAEGWFHLFDL-TPAKVLDASGHHETLIGEEQRPV 118
VG C+ G +LLV SA+G ++ T ++ GH + +G PV
Sbjct: 477 VGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPV 526
>gi|241896933 WD repeat domain 25 [Homo sapiens]
Length = 544
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 70 VGDVCNKGKNLLVAVSAEGWFHLFDL-TPAKVLDASGHHETLIGEEQRPV 118
VG C+ G +LLV SA+G ++ T ++ GH + +G PV
Sbjct: 477 VGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPV 526
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 29.3 bits (64), Expect = 7.6
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 187 SVTLGPLGLPELMVSQPGCAYAILLCTWKKDTGSPPASEGPTDGSRETPAARDVVLHQTS 246
+ T G + + S P C T T + G +G ++ PA R HQT+
Sbjct: 1304 TATTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGTGQPEGGQQPPAGRPCETHQTT 1363
Query: 247 GRIHNKNVST-HLIGNIKQGHGTESSG 272
+VS L+ + H T SG
Sbjct: 1364 STGTTMSVSVGALLPDATSSHRTVESG 1390
>gi|103471989 kaptin (actin binding protein) [Homo sapiens]
Length = 436
Score = 29.3 bits (64), Expect = 7.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 288 MEEMEEADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHN--------R 339
+ E + LLW L A+ +D+TG+G +E+ + G +I+ H+
Sbjct: 347 LPEAQHGFHLLWQRSFSSPLLAMAHVDLTGDGLQELAVVSLKG-VHILQHSLIQASELVL 405
Query: 340 TVVRFQVDENIR 351
T +R QV++ R
Sbjct: 406 TRLRHQVEQRRR 417
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 28.9 bits (63), Expect = 9.9
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 33 LNELVVGDTSGKVSVYKNDDSRP--WLTCSCQGMLTCAG----VGDV-CNKGKNLLVAVS 85
++ LV+G SG++ DD R W +++ G V V N + L+VA S
Sbjct: 23 VSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGS 82
Query: 86 AEGWFHLFDLTPAKVL-DASGHHETLIGEEQRPV--FKQHIPANTKVMLISDIDGDGCRE 142
G ++DL AK+L GH + + P F +T + L DI GC
Sbjct: 83 QSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKL-WDIRRKGCVF 141
Query: 143 LVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLEGQVDSLSVTLGPLGLPELMVSQ 202
G++ + VR R+ G KW L D +V L L ++M
Sbjct: 142 RYRGHS-QAVRCLRFSPDG--------------KW-LASAADDHTVKLWDLTAGKMMSEF 185
Query: 203 PG 204
PG
Sbjct: 186 PG 187
>gi|110611237 coagulation factor XIII B subunit precursor [Homo
sapiens]
Length = 661
Score = 28.9 bits (63), Expect = 9.9
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 296 KLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDG-----------------QTYIIDHN 338
KLL+ +Q + + TG EEVV C DG + Y +++
Sbjct: 105 KLLYKIQENMRYGCASGYKTTGGKDEEVVQCLSDGWSSQPTCRKEHETCLAPELYNGNYS 164
Query: 339 RTVVRFQVDENIRAFCAGLYACKEGRNS---PCLVY 371
T F+V + ++ CA Y G+ + CL Y
Sbjct: 165 TTQKTFKVKDKVQYECATGYYTAGGKKTEEVECLTY 200
>gi|10834992 interleukin 13 receptor, alpha 2 precursor [Homo
sapiens]
Length = 380
Score = 28.9 bits (63), Expect = 9.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 190 LGPLGLPELMVSQPGCAY---AILLCTWKKDTG 219
+ P G+PE V C Y LLC+WK G
Sbjct: 130 ISPQGIPETKVQDMDCVYYNWQYLLCSWKPGIG 162
>gi|37574601 zinc finger protein 232 [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 9.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 280 TLDGTLKLMEEMEEADKLLWSVQVD---HQLFALEKLDVTGNGHEEVVACAWDGQTYIID 336
T +GTL+L + +A++L WS + Q+ + K TG E C G+T+I +
Sbjct: 259 TSEGTLELQQRNPKAERLRWSPAQEESFRQMVVIHKEIPTGKKDHECSEC---GKTFIYN 315
Query: 337 HNRTV 341
+ V
Sbjct: 316 SHLVV 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,773,245
Number of Sequences: 37866
Number of extensions: 889893
Number of successful extensions: 2170
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2157
Number of HSP's gapped (non-prelim): 28
length of query: 447
length of database: 18,247,518
effective HSP length: 105
effective length of query: 342
effective length of database: 14,271,588
effective search space: 4880883096
effective search space used: 4880883096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.