Guide to the Human Genome
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Name: GNGT1 Sequence: fasta or formatted (74aa) NCBI GI: 11386179
Description:

guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1

Referenced in:

G Proteins
Photoreceptors and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            4.1          3           2
 D aspartate           8.1          6           1
 E glutamate          16.2         12           2
 F phenylalanine       1.4          1           1
 G glycine             5.4          4           2
 H histidine           0.0          0           0
 I isoleucine          5.4          4           1
 K lysine             13.5         10           2
 L leucine             9.5          7           1
 M methionine          4.1          3           1
 N asparagine          2.7          2           1
 P proline             5.4          4           1
 Q glutamine           1.4          1           1
 R arginine            4.1          3           1
 S serine              4.1          3           1
 T threonine           2.7          2           1
 V valine             10.8          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide binding protein (G protein), gamm... 
GNG11                 0.724   guanine nucleotide binding protein gamma 11 precursor...
GNGT2                 0.528   guanine nucleotide binding protein-gamma transducing...
GNG12                 0.205   G-protein gamma-12 subunit 
GNG2                  0.197   guanine nucleotide binding protein (G protein), gamm...
GNG7                  0.197   guanine nucleotide binding protein (G protein), gamm...
GNG8                  0.181   guanine nucleotide binding protein (G protein), gamm...
GNG4                  0.181   guanine nucleotide binding protein (G protein), gam...
GNG4                  0.181   guanine nucleotide binding protein (G protein), gam...
GNG4                  0.181   guanine nucleotide binding protein (G protein), gamma...
GNG3                  0.173   guanine nucleotide binding protein (G protein), gamma...
GNG10                 0.142   guanine nucleotide binding protein (G protein), gamm...
GNG5                  0.110   guanine nucleotide binding protein (G protein), gamma...
LOC100291110          0.094   PREDICTED: hypothetical protein XP_002347578 
LOC100289060          0.094   PREDICTED: hypothetical protein XP_002343408 
GNG13                 0.087   guanine nucleotide binding protein (G protein), gamma...
CNTLN                 0.071   centlein isoform 1 
DNAJC25-GNG10         0.055   DNAJC25-GNG10 protein 
LOC648044             0.047   PREDICTED: similar to hCG1650801 
LOC648044             0.047   PREDICTED: similar to hCG1650801 
LOC648044             0.047   PREDICTED: similar to hCG1650801 
PRAMEF17              0.031   PRAME family member 17 
PRAMEF16              0.031   PRAME family member 16 
DICER1                0.024   dicer1 
DICER1                0.024   dicer1 
RGS11                 0.024   regulator of G-protein signalling 11 isoform 1 [Homo...
RGS11                 0.024   regulator of G-protein signalling 11 isoform 2 
MLL3                  0.016   myeloid/lymphoid or mixed-lineage leukemia 3 
CD247                 0.016   T-cell receptor zeta chain isoform 2 precursor 
PEG10                 0.016   paternally expressed 10 isoform RF1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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