Guide to the Human Genome
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Name: LOC648044 Sequence: fasta or formatted (69aa) NCBI GI: 169214197
Description:

PREDICTED: similar to hCG1650801

Referenced in:

G Proteins

Other entries for this name:
alt mRNA [69aa] PREDICTED: similar to hCG1650801
alt mRNA [69aa] PREDICTED: similar to hCG1650801
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         10           2
 C cysteine            1.4          1           1
 D aspartate           5.8          4           1
 E glutamate           5.8          4           1
 F phenylalanine       4.3          3           1
 G glycine             4.3          3           1
 H histidine           0.0          0           0
 I isoleucine          7.2          5           1
 K lysine             10.1          7           2
 L leucine             8.7          6           2
 M methionine          4.3          3           1
 N asparagine          4.3          3           1
 P proline             4.3          3           1
 Q glutamine           7.2          5           1
 R arginine            0.0          0           0
 S serine              5.8          4           2
 T threonine           2.9          2           1
 V valine              5.8          4           1
 W tryptophan          1.4          1           1
 Y tyrosine            1.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1650801 
LOC648044             1.000   PREDICTED: similar to hCG1650801 
LOC648044             1.000   PREDICTED: similar to hCG1650801 
GNG7                  0.398   guanine nucleotide binding protein (G protein), gamm...
GNG12                 0.389   G-protein gamma-12 subunit 
GNG2                  0.301   guanine nucleotide binding protein (G protein), gamm...
GNG4                  0.292   guanine nucleotide binding protein (G protein), gam...
GNG4                  0.292   guanine nucleotide binding protein (G protein), gam...
GNG4                  0.292   guanine nucleotide binding protein (G protein), gamma...
GNG8                  0.274   guanine nucleotide binding protein (G protein), gamm...
GNG3                  0.248   guanine nucleotide binding protein (G protein), gamma...
GNG5                  0.239   guanine nucleotide binding protein (G protein), gamma...
GNG10                 0.239   guanine nucleotide binding protein (G protein), gamm...
LOC100291110          0.177   PREDICTED: hypothetical protein XP_002347578 
LOC100289060          0.177   PREDICTED: hypothetical protein XP_002343408 
DNAJC25-GNG10         0.115   DNAJC25-GNG10 protein 
GNGT2                 0.115   guanine nucleotide binding protein-gamma transducing...
GNG11                 0.062   guanine nucleotide binding protein gamma 11 precursor...
GNGT1                 0.053   guanine nucleotide binding protein (G protein), gamm...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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