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Search of human proteins with 209862817
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209862817 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209862817 FXYD domain containing ion transport regulator 3 is... 185 8e-48
gi|209862809 FXYD domain containing ion transport regulator 3 is... 185 8e-48
gi|5174635 FXYD domain containing ion transport regulator 3 isof... 185 8e-48
gi|209862819 FXYD domain containing ion transport regulator 3 is... 171 1e-43
gi|11612674 FXYD domain containing ion transport regulator 3 iso... 171 1e-43
gi|209862811 FXYD domain containing ion transport regulator 3 is... 134 2e-32
gi|27764904 FXYD domain containing ion transport regulator 4 [Ho... 89 6e-19
gi|209862815 FXYD domain containing ion transport regulator 3 is... 69 1e-12
gi|209862813 FXYD domain containing ion transport regulator 3 is... 69 1e-12
gi|11612672 phospholemman precursor [Homo sapiens] 64 2e-11
gi|11612670 phospholemman precursor [Homo sapiens] 64 2e-11
gi|169194724 PREDICTED: similar to FXYD domain-containing ion tr... 63 4e-11
gi|169194767 PREDICTED: similar to FXYD domain-containing ion tr... 63 4e-11
gi|169190389 PREDICTED: similar to FXYD domain-containing ion tr... 63 4e-11
gi|11612655 FXYD domain-containing ion transport regulator 6 [Ho... 61 2e-10
gi|11612659 FXYD domain-containing ion transport regulator 7 [Ho... 44 4e-05
gi|11125764 FXYD domain-containing ion transport regulator 2 iso... 41 2e-04
gi|47778938 FXYD domain-containing ion transport regulator 5 [Ho... 41 2e-04
gi|21618361 FXYD domain-containing ion transport regulator 5 [Ho... 41 2e-04
gi|11125766 FXYD domain-containing ion transport regulator 2 iso... 41 2e-04
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 32 0.14
gi|29171740 phosphatidic acid phosphatase type 2B [Homo sapiens] 29 0.70
gi|29171742 phosphatidic acid phosphatase type 2B [Homo sapiens] 29 0.70
gi|134152725 receptor tyrosine kinase-like orphan receptor 1 iso... 26 5.9
gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange... 26 5.9
gi|170650643 solute carrier family 22, member 23 isoform a [Homo... 26 7.7
gi|48526516 solute carrier family 22, member 23 isoform b [Homo ... 26 7.7
gi|188595665 FXYD domain-containing ion transport regulator 2 is... 26 7.7
>gi|209862817 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 185 bits (469), Expect = 8e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
Query: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
CKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
>gi|209862809 FXYD domain containing ion transport regulator 3
isoform 3 [Homo sapiens]
Length = 144
Score = 185 bits (469), Expect = 8e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
Sbjct: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
Query: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
CKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 118 CKCKFGQKSGHHPGETPPLITPGSAQS 144
>gi|5174635 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 185 bits (469), Expect = 8e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
Query: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
CKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
>gi|209862819 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 171 bits (432), Expect = 1e-43
Identities = 87/113 (76%), Positives = 87/113 (76%), Gaps = 26/113 (23%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS-- 58
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW 60
Query: 59 ------------------------AKCKCKFGQKSGHHPGETPPLITPGSAQS 87
AKCKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSGHHPGETPPLITPGSAQS 113
>gi|11612674 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 171 bits (432), Expect = 1e-43
Identities = 87/113 (76%), Positives = 87/113 (76%), Gaps = 26/113 (23%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS-- 58
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW 60
Query: 59 ------------------------AKCKCKFGQKSGHHPGETPPLITPGSAQS 87
AKCKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSGHHPGETPPLITPGSAQS 113
>gi|209862811 FXYD domain containing ion transport regulator 3
isoform4 precursor [Homo sapiens]
Length = 96
Score = 134 bits (336), Expect = 2e-32
Identities = 70/96 (72%), Positives = 70/96 (72%), Gaps = 26/96 (27%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS-- 58
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW 60
Query: 59 ------------------------AKCKCKFGQKSG 70
AKCKCKFGQKSG
Sbjct: 61 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSG 96
>gi|27764904 FXYD domain containing ion transport regulator 4
[Homo sapiens]
Length = 89
Score = 89.4 bits (220), Expect = 6e-19
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSA 59
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSG 59
Query: 60 KCKCKFGQKS-GHHPGETPPLITPGSA 85
KCKCK QK P + PLITPGSA
Sbjct: 60 KCKCKSSQKQHSPVPEKAIPLITPGSA 86
>gi|209862815 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|209862813 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|11612672 phospholemman precursor [Homo sapiens]
Length = 92
Score = 64.3 bits (155), Expect = 2e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 8 LLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQ 67
+LVF G + + ++ PF YD+ SLQ+GGL+ AG+L +GI+IV+S +C+CKF Q
Sbjct: 7 ILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQ 66
Query: 68 K 68
+
Sbjct: 67 Q 67
>gi|11612670 phospholemman precursor [Homo sapiens]
Length = 92
Score = 64.3 bits (155), Expect = 2e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 8 LLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQ 67
+LVF G + + ++ PF YD+ SLQ+GGL+ AG+L +GI+IV+S +C+CKF Q
Sbjct: 7 ILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQ 66
Query: 68 K 68
+
Sbjct: 67 Q 67
>gi|169194724 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 63.2 bits (152), Expect = 4e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
M+ V + L LA + DA + E + PF+YD+ +L++ GL+CA VL ++GI++++ +
Sbjct: 1 MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGLVCAVVLFSIGILLILGCR 60
Query: 61 CKCKFGQKSGHHPGE 75
CKC F QK PGE
Sbjct: 61 CKCSFNQKP-RTPGE 74
>gi|169194767 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 63.2 bits (152), Expect = 4e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
M+ V + L LA + DA + E + PF+YD+ +L++ GL+CA VL ++GI++++ +
Sbjct: 1 MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGLVCAVVLFSIGILLILGCR 60
Query: 61 CKCKFGQKSGHHPGE 75
CKC F QK PGE
Sbjct: 61 CKCSFNQKP-RTPGE 74
>gi|169190389 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 63.2 bits (152), Expect = 4e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
M+ V + L LA + DA + E + PF+YD+ +L++ GL+CA VL ++GI++++ +
Sbjct: 1 MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGLVCAVVLFSIGILLILGCR 60
Query: 61 CKCKFGQKSGHHPGE 75
CKC F QK PGE
Sbjct: 61 CKCSFNQKP-RTPGE 74
>gi|11612655 FXYD domain-containing ion transport regulator 6
[Homo sapiens]
Length = 95
Score = 61.2 bits (147), Expect = 2e-10
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
M+ V + L LA + A + E + PF+YD+ +L++GGL+ A VL ++GI++++S +
Sbjct: 1 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60
Query: 61 CKCKFGQK---SGHHPGETPPLITPGSAQ 86
CKC F QK G + LIT + +
Sbjct: 61 CKCSFNQKPRAPGDEEAQVENLITANATE 89
>gi|11612659 FXYD domain-containing ion transport regulator 7
[Homo sapiens]
Length = 80
Score = 43.5 bits (101), Expect = 4e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 25 DKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHP 73
++ PFYYD++++Q G+ A +L +GI+IV+S K KC+ P
Sbjct: 13 EEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKVKCRKADSRSESP 61
>gi|11125764 FXYD domain-containing ion transport regulator 2
isoform 2 [Homo sapiens]
Length = 64
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 11 FLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSG 70
+L G P D + PFYYD+ +++ GGLI AG+ +G++I++S + +C G K
Sbjct: 5 YLGGSPKGDVD-------PFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCG-GNKKR 56
Query: 71 HHPGETPP 78
E P
Sbjct: 57 RQINEDEP 64
>gi|47778938 FXYD domain-containing ion transport regulator 5 [Homo
sapiens]
Length = 178
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 26 KNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCK 62
++ PF+YD H+L+ GL+ A VL GIII+ S KC+
Sbjct: 131 EDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCR 167
>gi|21618361 FXYD domain-containing ion transport regulator 5 [Homo
sapiens]
Length = 178
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 26 KNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCK 62
++ PF+YD H+L+ GL+ A VL GIII+ S KC+
Sbjct: 131 EDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCR 167
>gi|11125766 FXYD domain-containing ion transport regulator 2
isoform 1 [Homo sapiens]
Length = 66
Score = 40.8 bits (94), Expect = 2e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 29 PFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHPGETPP 78
PFYYD+ +++ GGLI AG+ +G++I++S + +C G K E P
Sbjct: 18 PFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCG-GNKKRRQINEDEP 66
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 29 PFYYD--WHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQ------KSGH--HPGETPP 78
P+Y+D W ++ +G L+ +L +G++++ + G K+ H HPG PP
Sbjct: 1274 PYYHDEGWVAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEPKAAHEYHPGSKPP 1333
Query: 79 LITPGSAQ 86
L T G AQ
Sbjct: 1334 LPTSGPAQ 1341
>gi|29171740 phosphatidic acid phosphatase type 2B [Homo sapiens]
Length = 311
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 10 VFLAGFP--VLDANDLEDKNSPFYYDWHS----LQVGGLICAGVLCAMGIIIVMSA 59
+F+AG P +++ + ++ + FY + S L+ G I VLCA+GI+I + A
Sbjct: 44 LFMAGLPFLIIETSTIKPYHRGFYCNDESIKYPLKTGETINDAVLCAVGIVIAILA 99
>gi|29171742 phosphatidic acid phosphatase type 2B [Homo sapiens]
Length = 311
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 10 VFLAGFP--VLDANDLEDKNSPFYYDWHS----LQVGGLICAGVLCAMGIIIVMSA 59
+F+AG P +++ + ++ + FY + S L+ G I VLCA+GI+I + A
Sbjct: 44 LFMAGLPFLIIETSTIKPYHRGFYCNDESIKYPLKTGETINDAVLCAVGIVIAILA 99
>gi|134152725 receptor tyrosine kinase-like orphan receptor 1
isoform 1 [Homo sapiens]
Length = 937
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 12 LAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGH 71
L P D+ D ++KN +++ ++ V + I ++ C C+ QKS
Sbjct: 385 LCDIPACDSKDSKEKNK--------MEILYILVPSVAIPLAIALLFFFICVCRNNQKSSS 436
Query: 72 HPGETPP 78
P + P
Sbjct: 437 APVQRQP 443
>gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange
factor 2 [Homo sapiens]
Length = 1785
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 15 FPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKC----------- 63
F + N LE S F + W +Q ICA C + I +
Sbjct: 478 FKEIFLNILETSTSSFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERLVNDL 537
Query: 64 -KFGQ-KSGHHPGETP 77
K Q +SGH G TP
Sbjct: 538 SKIAQGRSGHELGMTP 553
>gi|170650643 solute carrier family 22, member 23 isoform a [Homo
sapiens]
Length = 686
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 LGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
LGL++ AGF +L A +E N Y+ H + C ++C + I+++ ++
Sbjct: 572 LGLVLASAGFGMLTAPIIELHNQKGYFLHHII----FACCTLICIICILLLPESR 622
>gi|48526516 solute carrier family 22, member 23 isoform b [Homo
sapiens]
Length = 405
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 6 LGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
LGL++ AGF +L A +E N Y+ H + C ++C + I+++ ++
Sbjct: 291 LGLVLASAGFGMLTAPIIELHNQKGYFLHHII----FACCTLICIICILLLPESR 341
>gi|188595665 FXYD domain-containing ion transport regulator 2
isoform 3 [Homo sapiens]
Length = 145
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 33 DWHSLQVGGLICAGVLCAMGIIIVMS 58
D+ +++ GGLI AG+ +G++I++S
Sbjct: 88 DYETVRNGGLIFAGLAFIVGLLILLS 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,915,607
Number of Sequences: 37866
Number of extensions: 150965
Number of successful extensions: 327
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 29
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.