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Search of human proteins with 208431795
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens]
(403 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens] 820 0.0
gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens] 820 0.0
gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens] 813 0.0
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... 33 0.35
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 1.3
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 1.3
gi|150378498 fragile site-associated protein [Homo sapiens] 31 1.7
gi|42734430 polymerase I and transcript release factor [Homo sap... 30 3.0
gi|148539876 beta-adrenergic receptor kinase 1 [Homo sapiens] 30 3.0
gi|153082722 intercellular adhesion molecule 2 precursor [Homo s... 30 5.1
gi|153082719 intercellular adhesion molecule 2 precursor [Homo s... 30 5.1
gi|153082699 intercellular adhesion molecule 2 precursor [Homo s... 30 5.1
gi|153082686 intercellular adhesion molecule 2 precursor [Homo s... 30 5.1
gi|153082696 intercellular adhesion molecule 2 precursor [Homo s... 30 5.1
gi|52345387 meteorin, glial cell differentiation regulator-like ... 29 6.6
gi|62244004 modulator of estrogen induced transcription isoform ... 29 8.6
gi|63176611 modulator of estrogen induced transcription isoform ... 29 8.6
gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 29 8.6
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 29 8.6
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 29 8.6
gi|84662750 hypothetical protein LOC284083 [Homo sapiens] 29 8.6
>gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens]
Length = 403
Score = 820 bits (2119), Expect = 0.0
Identities = 403/403 (100%), Positives = 403/403 (100%)
Query: 1 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 60
MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT
Sbjct: 1 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 60
Query: 61 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 120
SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA
Sbjct: 61 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 120
Query: 121 FSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPV 180
FSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPV
Sbjct: 121 FSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPV 180
Query: 181 NLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFK 240
NLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFK
Sbjct: 181 NLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFK 240
Query: 241 IQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAK 300
IQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAK
Sbjct: 241 IQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAK 300
Query: 301 VVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTV 360
VVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTV
Sbjct: 301 VVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTV 360
Query: 361 CFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 403
CFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
Sbjct: 361 CFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 403
>gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens]
Length = 460
Score = 820 bits (2119), Expect = 0.0
Identities = 403/403 (100%), Positives = 403/403 (100%)
Query: 1 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 60
MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT
Sbjct: 58 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 117
Query: 61 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 120
SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA
Sbjct: 118 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 177
Query: 121 FSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPV 180
FSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPV
Sbjct: 178 FSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPV 237
Query: 181 NLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFK 240
NLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFK
Sbjct: 238 NLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFK 297
Query: 241 IQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAK 300
IQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAK
Sbjct: 298 IQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAK 357
Query: 301 VVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTV 360
VVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTV
Sbjct: 358 VVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTV 417
Query: 361 CFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 403
CFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
Sbjct: 418 CFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 460
>gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens]
Length = 467
Score = 813 bits (2101), Expect = 0.0
Identities = 403/410 (98%), Positives = 403/410 (98%), Gaps = 7/410 (1%)
Query: 1 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 60
MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT
Sbjct: 58 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 117
Query: 61 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 120
SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA
Sbjct: 118 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 177
Query: 121 FS-------DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE 173
FS DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE
Sbjct: 178 FSQHTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE 237
Query: 174 DYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFN 233
DYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFN
Sbjct: 238 DYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFN 297
Query: 234 PTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPD 293
PTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPD
Sbjct: 298 PTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPD 357
Query: 294 DINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQR 353
DINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQR
Sbjct: 358 DINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQR 417
Query: 354 EEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 403
EEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
Sbjct: 418 EEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 467
>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Homo sapiens]
Length = 543
Score = 33.5 bits (75), Expect = 0.35
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 127 LGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE 173
LGT+LQ PR ++S L G+ L ++++EI P + E PE
Sbjct: 166 LGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETKPE 212
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 7 KLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACG 55
+L ++RC+N +D P + T A + T P DP + A Y CG
Sbjct: 100 RLDQSRCSN-YDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYAVCG 147
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 7 KLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACG 55
+L ++RC+N +D P + T A + T P DP + A Y CG
Sbjct: 100 RLDQSRCSN-YDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYAVCG 147
>gi|150378498 fragile site-associated protein [Homo sapiens]
Length = 5005
Score = 31.2 bits (69), Expect = 1.7
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 87 MNKLIEYYQQLAQK--EKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLA 144
+N+ I+ YQQL + RD +K RR + + DK+GL + R+ SIS
Sbjct: 3566 INQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLSYKPSYSRS-KSISASG 3624
Query: 145 GLSLKEGEDQKEIKIEPAQAVDEVEPLPE 173
LK E + V E E LPE
Sbjct: 3625 RPPLKRME-------RASSRVGETEELPE 3646
>gi|42734430 polymerase I and transcript release factor [Homo
sapiens]
Length = 390
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 95 QQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQ 154
+Q Q +K+E + +L RRRN+ + + D+ L +L S+ L KEGE+
Sbjct: 130 RQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLS---ISKSLKESEALPEKEGEEL 186
Query: 155 KE 156
E
Sbjct: 187 GE 188
>gi|148539876 beta-adrenergic receptor kinase 1 [Homo sapiens]
Length = 689
Score = 30.4 bits (67), Expect = 3.0
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 83 HTQRMNKLIEYYQQLAQKEKVERDRKKLARRR 114
H + L+E+Y+++ + EK+E + +++AR R
Sbjct: 75 HLEEARPLVEFYEEIKKYEKLETEEERVARSR 106
>gi|153082722 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 276 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 310
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082719 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 276 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 310
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082699 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 276 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 310
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082686 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 276 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 310
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082696 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 276 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 310
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|52345387 meteorin, glial cell differentiation regulator-like
[Homo sapiens]
Length = 311
Score = 29.3 bits (64), Expect = 6.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 344 GIFIKVTPQREEGEVTVCFKMK-------HDFKNLAAPIRPIEESD 382
G+F++ TPQ++ G T F+ + D L+AP RP +++
Sbjct: 150 GLFVEATPQQDIGRRTTGFQYELVRRHRASDLHELSAPCRPCSDTE 195
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 286 ECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDD 331
E E GDPD+I T P K+ GK E DEL+ +DD
Sbjct: 57 EEEGGDPDNIELTVSTDTPNKK-PTKGKGKKHEADELSGDASVEDD 101
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 286 ECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDD 331
E E GDPD+I T P K+ GK E DEL+ +DD
Sbjct: 57 EEEGGDPDNIELTVSTDTPNKK-PTKGKGKKHEADELSGDASVEDD 101
>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
Length = 1235
Score = 28.9 bits (63), Expect = 8.6
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 91 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE 150
++Y +Q Q +++++ R KL + N + + L + Q+ + +S L + +
Sbjct: 429 LQYLEQKQQLDELKK-RIKLYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEI 487
Query: 151 GED----QKEIKIEPAQAVDEVEP----------LPEDYYTRPVNLTEVTTLQQRLLQPD 196
+D +E++ A+ V E+E + +DY E T + LQ D
Sbjct: 488 NKDLERSMRELQATHAETVQELEKTRNMLIMQHKINKDYQME----VEAVTRKMENLQQD 543
Query: 197 FQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPE 251
++ ++ HLL R+ R K E L + KFK +++ + + E
Sbjct: 544 YE-----LKVEQYVHLLDIRAARIHKLEAQLKDIAYGTKQYKFKPEIMPDDSVDE 593
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 28.9 bits (63), Expect = 8.6
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 91 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE 150
++Y +Q Q +++++ R KL + N + + L + Q+ + +S L + +
Sbjct: 429 LQYLEQKQQLDELKK-RIKLYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEI 487
Query: 151 GED----QKEIKIEPAQAVDEVEP----------LPEDYYTRPVNLTEVTTLQQRLLQPD 196
+D +E++ A+ V E+E + +DY E T + LQ D
Sbjct: 488 NKDLERSMRELQATHAETVQELEKTRNMLIMQHKINKDYQME----VEAVTRKMENLQQD 543
Query: 197 FQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPE 251
++ ++ HLL R+ R K E L + KFK +++ + + E
Sbjct: 544 YE-----LKVEQYVHLLDIRAARIHKLEAQLKDIAYGTKQYKFKPEIMPDDSVDE 593
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 28.9 bits (63), Expect = 8.6
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 32/128 (25%)
Query: 192 LLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKI---------- 241
+L+PD+QP+ + +LL+ S CE + S P IK +I
Sbjct: 1067 ILKPDYQPLAIKNISTLPVNLLLSTSGPFFICETDKSLLPATPEPIKLEIDEEKNLLIKF 1126
Query: 242 --------------QLVAVNYIPEVRIMSI--------PNLRYMKESQVLLTLTNPVENL 279
+++A+ Y+ +I S+ PNL + + + N E +
Sbjct: 1127 DPSYRNDLNNWVAEEILAIKYVEHPQIDSLDLRGEVHYPNLSFETKELDFGCILNDTELI 1186
Query: 280 THVTLFEC 287
+VT+ C
Sbjct: 1187 RYVTITNC 1194
>gi|84662750 hypothetical protein LOC284083 [Homo sapiens]
Length = 570
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 179 PVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 236
P+ EV T Q +L PDF+P C+ L I S C + K +P S
Sbjct: 429 PLLNPEVETPQSQLTTPDFEPKCSPSLDLLLSGFKIDSSPFCEDLKFQREKASLSPPS 486
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,910,711
Number of Sequences: 37866
Number of extensions: 710625
Number of successful extensions: 2033
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2024
Number of HSP's gapped (non-prelim): 23
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.