Guide to the Human Genome
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Name: ATP6V1F Sequence: fasta or formatted (119aa) NCBI GI: 20357547
Description:

ATPase, H+ transporting, lysosomal 14kD, V1 subunit F

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         10           2
 C cysteine            0.0          0           0
 D aspartate           8.4         10           2
 E glutamate           7.6          9           1
 F phenylalanine       4.2          5           1
 G glycine             7.6          9           2
 H histidine           3.4          4           1
 I isoleucine         10.9         13           2
 K lysine              4.2          5           1
 L leucine             9.2         11           2
 M methionine          2.5          3           1
 N asparagine          5.0          6           1
 P proline             3.4          4           1
 Q glutamine           3.4          4           2
 R arginine            7.6          9           2
 S serine              2.5          3           1
 T threonine           5.0          6           2
 V valine              5.0          6           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal 14kD, V1 subunit ... 
GRLF1                 0.014   glucocorticoid receptor DNA binding factor 1 
NBPF15                0.009   hypothetical protein LOC284565 
PREX1                 0.005   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
SHCBP1                0.005   SHC SH2-domain binding protein 1 
GNG4                  0.005   guanine nucleotide binding protein (G protein), gam...
GNG4                  0.005   guanine nucleotide binding protein (G protein), gam...
GNG4                  0.005   guanine nucleotide binding protein (G protein), gamma...
NBPF10                0.005   hypothetical protein LOC100132406 
LOC100288142          0.005   PREDICTED: hypothetical protein XP_002344485 
NBPF8                 0.005   PREDICTED: hypothetical protein LOC728841 
SMG1                  0.005   PI-3-kinase-related kinase SMG-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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