Guide to the Human Genome
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Name: SHCBP1 Sequence: fasta or formatted (672aa) NCBI GI: 190358504
Description:

SHC SH2-domain binding protein 1

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         36           3
 C cysteine            2.8         19           1
 D aspartate           6.4         43           2
 E glutamate          10.3         69           4
 F phenylalanine       4.8         32           2
 G glycine             7.1         48           3
 H histidine           2.2         15           2
 I isoleucine          6.0         40           2
 K lysine              5.5         37           3
 L leucine             9.7         65           2
 M methionine          2.1         14           2
 N asparagine          3.9         26           2
 P proline             2.8         19           1
 Q glutamine           4.6         31           1
 R arginine            3.9         26           1
 S serine              7.0         47           2
 T threonine           4.8         32           2
 V valine              6.8         46           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SHC SH2-domain binding protein 1 
C1orf14               0.164   chromosome 1 open reading frame 14 
FBXO10                0.011   F-box protein 10 
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
GBAS                  0.006   nipsnap homolog 2 
STAT1                 0.005   signal transducer and activator of transcription 1 is...
STAT1                 0.005   signal transducer and activator of transcription 1 i...
DST                   0.005   dystonin isoform 4 
DST                   0.005   dystonin isoform 3 
DST                   0.005   dystonin isoform 2 
DST                   0.005   dystonin isoform 1 
DST                   0.005   dystonin isoform 1eA precursor 
PTPN21                0.004   protein tyrosine phosphatase, non-receptor type 21 ...
LOC100289289          0.004   PREDICTED: hypothetical protein XP_002343409 
MYH6                  0.004   myosin heavy chain 6 
TMEM57                0.004   transmembrane protein 57 
COPB1                 0.004   coatomer protein complex, subunit beta 1 
COPB1                 0.004   coatomer protein complex, subunit beta 1 
COPB1                 0.004   coatomer protein complex, subunit beta 1 
FAM153B               0.004   hypothetical protein LOC202134 
ZNF266                0.004   zinc finger protein 266 
ZNF266                0.004   zinc finger protein 266 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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